Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------ZAT2                                                      --------->At4g35610                                                      <---------At4g35610                                                      --------->ZAT2                          -------                                                    <---------ZAT18                          --------                                                    --------->ZAT18                          <-------     <------MYB46(1)                             --------->ALFIN1                         <----------ID1     ----------->GT1                         ---------->DOF2    <---------TOE2(3)       --------->ANAC46     <---------MYB46(3)                <---------ANAC58         <---------TOE1(3)       --------->ANAC58     <------MYB83                     <---------MYB46(3)       <---------DOF5.7(2)      --------->ANAC58 ->ZmHOX2a(1)            --------->ICU4<---------ANAC58  <---------LBD16    <----------DOF2----------   ggcaggctggttaaaccaagtcttgacataattctgccagtgcttgcgaaagtgtgagctcgggataacgttgttgtgcttcatttttctaagcaacaaa  8065100                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                --------->YAB1       ---------->DOF2      <-----------GT1                        --------->YAB1     <---------ICU4----------->RAV1(1) >GAMYB --------->REM1(1)                   <---------YAB1     <---------ATHB12  --------->TOE2(3) ->MYB46(3)                               --------->YAB1  --------->TOE2(3)--------->ANAC58 --MYB52(2)                       ----------->GT1         ------->GAMYB    --------->ANAC58 ->RAV1(1)        <---------KAN4(2)    --------->YAB1     --------->TOE1(3)--------->ANAC46   cacaaatgttacaacatgagaataaactaaacagagaagtaaaataatcatagatttcaaccctaatcatgttacacaagcaacattaaaagaagcaaat  8065200                                                               --------->MYB46(3)           <-------TEIL                                       -------->P       <---------AHL20(2)                               <---------YAB1      --------->AHL20(2)                                --------->ICU4      <---------AHL20(2)                              <---------ICU4     <---------YAB1                                   --------->YAB1--------->AHL20(2)   <--------HAHB4                                    <---------ATHB12       <---------TOE1(2)  <---------YAB1                                    ------->TEIL------->GAMYB  --------->ICU4                        --------->TOE2(3)    --------->WOX13(1)         <----------DOF2   gggtattattaaatacattccaagtgatacaaattagactaatctaaattgatgaatcatgatcaaccaaaaaaatcgcagaatcaaatgctttacaaaa  8065300                       --------->ANAC58                       --------->ANAC58 --------->At4g35610                 ---------->DOF2     <---------HSFC1(2)          --------->YAB1   --------->DAG2              --------->ANAC58       --------->HSFC1(2)    <-----------GT1----------->GT1              --------->ANAC58    ---------->DOF2   ------>ZmHOX2a(2)    --------->ANAC58            ---------->DOF2      --------->AtMYB61 <---------At4g35610   --------->ANAC58       <---------ARR11(3)   <---------MYB52(2)    <---------AGP1<<<<<<<<<ARR2    ---------->DOF2   ttctaacaatatccaaaagcaaagctcgaaacaaaccaaagcttctgcaattgatctgattttacaatcaaatgcaaggaaaaaaaagttcaattctgag  8065400                                                                                                  ---                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                    --------->At4g35610                                                                           <---------ARR14(2)    ----                   --------->TOE2(3)                    ---------->DOF2    --------->ARR14(2) -------        --------->RAP2.6(3)                       <-----------------------TaNAC69(2)<---------At4g35610    --------->At4g35610                          --------->CCA1(2)        <------ZmHOX2a(1)   -------   attataagatgactgcaaatttcttaaacacctaaaactgactacgaagagagacgagaaaagctcagagacagaaggatactcacagcggcttggacga  8065500                                                                                              <------                                                                                            <--------                                                                                            <--------                                                                                      <------------CBF                                                                                     --------->ATHB12                                                                 <---------MYB46(3)  --------->ATHB51 ------>DAG2              *TSS                             --------->TOE2(3)        <---------YAB1 ------>DOF2       ----------->GT1                <---------AHL20(2)             <---------YAB1 -->ANAC58      --------->ALFIN1                 --------->AHL20(2)              --------->ICU4 <---- -->ANAC58   <---------HSFB2a(2)        <---------------------WRI1               ------>ZmHOX2a(1)<--   aaagtgaaggcttctccagaggggctaattgttcatcgataattcgatatataaaatgaaaccctagttgttgagacagggtccttattattgggcttat  8065600                         <------------CBF                        --------->ATHB12                         <-----------GT1  <---------YAB1       <---------AHL20(1)                     --------->ARR14(2)  ----------->TBP      --------->AHL20(1)                     <---------ARR14(2) ---CCA1(2)            <---------AHL20(2)                  <---------ANAC46 -ANAC58               --------->AHL20(2)              <---------ANAC58 -ANAC58           --------->AHL20(2)     ---------->DOF2  <---------ANAC58        --------->ANAC46 -----YAB1         <---------AHL20(2)    <---------ATHB12  <---------ANAC58      <-----------GT1 --------DOF2    <----------DOF2--------->ATERF1(1)    <---------ANAC58    <---------ANAC46   ctttataaatgggcctggtctttaattaattggagacgacccaataaagtttcgaatacttgcgttttctcaatctctcgtataaacgacatcgttttgg  8065700                                                                                         ------->TEIL                                                                                   ---------->TaMYB80                                                             <---------YAB1        <---------KAN4(2)                                                          <---------MYB52(1)     <------ZmHOX2a(1)                              ---------->DOF2            <-------GAMYB       --------->ARR14(2)                <---------AHL20(2)                      ----------->GT1      <---------ARR14(2)  --------->AHL20(2)    <----------DOF2           <---------YAB1            <------ZmHOX2a(1)     ---   aatataaaatataggtatttttttttctttcacaaagtctgtttttgagtttttgattcggttattttagtttctgcaggataggaatatgcacattgta  8065800                       --------->ICU4              >>>>>>>>>>AGL22              >>>>>>>>>>AGL20              >>>>>>>>>>AGL24              --------->YAB1              <--------ATHB1              <---------ICU4              --------->ATHB51              <------------ATHB5              --------->ATHB12        --------->ARR14(2)              -------->ATHB1          <---------ARR14(2)             <---------ATHB51       --------->LBD16             <---------ATHB12     <-----------------AGL1             <---------YAB1       <---------LBD16                                 --------->STY1(2)           --------->YAB1         <-----------------AG                   <-----------GT1 -------->GT1--------->ICU4      --------->MYB52(1)                --------->ICU4 <---------STY1(2) -   atgtataatataacaataattggccataattcatataccggaattggctatctatcgaatcaagttgcaatatttatactcactagctactatatcaaat  8065900                                                                                       --------->ARR11(3)                                               ---------->DOF2                         <---------ARR11(3)      <----------DOF2                       ------->TEIL                     <---------WOX13(1) --------->DOF2--------->AHL20(2) ----------->GT1                         <---------YAB1  <----------DOF2   aagaaagtctttaaaaattgaatactcaaaatgtagtagtaaaatgtatcaaagccaacttactcaagtactagttgtaattggtttaagagctttaata  8066000  Previous    Next  AGI:  At5g23900.1    Description:  60S ribosomal protein L13 (RPL13D). Identical to 60S ribosomal protein L13-3 (RPL13D) [Arabidopsis Thaliana] (GB:Q9FF90); similar to ATBBC1 (breast basic conserved 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G49010.2); similar to ATBBC1 (breast basic conserved 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G49010.3); similar to ATBBC1 (breast basic conserved 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G49010.1); similar to 60S ribosomal protein L13-2 (Cold-induced protein C24B) (GB:P41129); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR001380) Range:  from: 8063988    to: 8065526    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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