Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ANAC55(2)          <---------ANAC55(2)    <---------ATHB12                 <---------ANAC58   --------->ANAC46                  <---------ANAC46   --------->ANAC58              <---------ANAC58                                               <----   --------->ANAC58              <---------ANAC58 <---------CCA1(2)       <---------ICU4        <---- --------->AtMYB61        <---------AHL20(2) ------->GAMYB         ----------->GT1           <------- -------->MYB46(3)     ----------->GT1    <-----------GT1       <---------TOE2(3)     <---------DAG2- ---------GT1     <---------ANAC46   <---------ANAC58 <---------YAB1----------->GT1   <----------DOF2   caaccactcaacatgtaatctcgtatagtttattgccttgcttataaccctcaaatcttatagattaatgtgttaaaaatggcaatagctttttgtaact  8058300                                                                     --------->At5g28300                                                      ------>ZmHOX2a(1)     <---------ANAC58                        <-----------GT1        ----------->GT1     <---------ANAC58                     <---------ARR11(3)    --------->DAG2          <---------ANAC55(2) ------DOF2                               --------->ARR11(3)   ---------->DOF2          ----------->GT1 -----DAG2  <---------At4g35610   --------->ATHB12  ----------------->AGL1              --------->ANAC55(2) ----GT1    --------->At4g35610  <---------YAB1     <-----------------AGL1        --------->At5g28300 -------------->AtSPL8          <-----------HVH21   <-----------------AG         ----------->GT1   tttttgtacttgtcatcttagtagaagcttaagttgtcattggatatattccactcctatttcggtaaagcggtaaactaaaacagtaaaacgtgataaa  8058400                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   ==                                                                                                   <-                                                                                                   <-                                                                                                   >>                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                 <---                                                                                                -----                                                                                              -------                                                                           <---------ALFIN1   <------                                                                     ================================            <---------ANAC46                                      <---------ARR11(3)       <---------ANAC46            <---------ANAC58             ---------->DOF2          --------->ARR11(3)       <---------ANAC58            <---------ANAC58   ----------->GT1              --------->AtLEC2 ----------->RAV1(2)-----     <----------DOF2        ---------->DOF2           <----------DOF2<----------DOF2       <---------ANAC58   ctctcttctttgttccttgtatgttctctcaaaagtttaaaatgaaagcgaaaacactttccattcaagagctttcaacacctggtcttggcttcgtgct  8058500                                                                                         <---------ANAC58                                                                                         <---------ANAC55(1)                                                                                         <---------ANAC58                                                                                        --------->MYB46(2)                                                                                        --------->MYB111(1)                                                                                        --------->MYB52(2) --------bZIP60(2)                                                                      --------->MYB59 ------->bZIP60(1)                                                                      --------->MYB111(2) --------bZIP60(1)                                                                      <---------AtMYB61 ------->O2                                                                            <---------MYB55(1) --------TGA1a                                                                       <-------GAMYB ======================bZIP_DOF                                                     --------->MYB55(2) --------ANAC46                                                                     --------->MYB111(2) --------ANAC58                                                                     <---------MYB46(3) >>>>>>>>AtbZIP1                                                                 <------MYB46(1) --------ANAC58                          <---------ATHB12                        <------MYB83-------- ------->TGA1a                          ------>MYB46(1)                         --------->MYB111(1) --------O2 <---------DAG2              ------>MYB83                     --------->ANAC58<------MYB46(1) ------TGA2(2)                          -------->P                       --------->ANAC58<------MYB83 ------>HVH21                         --------->AtMYB61                  --------->ANAC46<---------ANAC46 -->At4g35610                       >>>>>>>>>>MYB80                    ---------->DOF2<---------MYB52(1) ---At4g35610                      <-----------GT1             ----------->GT1  --------->MYB59 ========bZIP_DOF     <-----------GT1--------->MYB46(3)       ----------->GT1   --------->MYB46(2) ------>TGA1<----------DOF2      --------->AHL20(2)         ---------->DOF2 --------->WOX13(1)     <-   gacgtggcatctagcttttttttttcacttgtgaattaaaccaaccatatgtgttaaacatggaaagataaataaaagcaattaggtggttaggtgtgtt  8058600                                                           ------->GAMYB                                                         ------>MYB46(1)                                                         -------->P                                                 --------->ANAC58                                         --------->GLK1(2)--------->MYB46(3)        --------->At4g35610            --------->KAN4(1) ------>MYB83        <---------At4g35610        ------------>CBF    --------->AtMYB61                    *TSS --------->ALFIN1                  --------->ZAT18    --------->MYB46(3)                  --------->TOE2(3) ->ALFIN1                     <----------DOF2    --------->ANAC58  --------->ANAC46       <----------DOF2 --------ZAT6         ------->GAMYB<---------ZAT18    <---------MYB52(2)          ------------>CBF   agtgtgaggctgatcactgtccaacgctctccctttgtgcaatattctgtaacgaaaccaaccaaaaacacagaatacatttgatacaattactttaatt  8058700                                        --------->GLK1(2)               ------>ZmHOX2a(1)       <---------GLK1(2)                                      <------       --------->TOE2(3)               <---------ARR14(2)                                   <--------       --------->TOE1(3)          ----------->HVH21                                         <--------    <-----------GT1               ----------->TGA1   <---------AHL20(2)           --------->YAB1  --------->AHL20(2)            <---------At4g35610  <-----------GT1             <<<<<<<<<ARR2------- <---------ATHB12 ------>ZmHOX2a(1)    --------->ARR14(2)     ------>ZmHOX2a(1)  <---------ATHB12 ---   ccaattaaaccctaatcctcctctaccattcttctactgacgattctcttcatattttcttatcctctcttactctctctacaatcaaaccatggcttct  8058800                 --------->MYB55(1)                <---------MYB111(1)        <-------MYC2        <-------MYC4        <-------PIF5        ------->PIF5        ------->MYC4        ------->MYC2       =============================================bZIP_DOF       <---------PIF3(3)       --------->TGA1a       <<<<<<<<<<HY5       --------->PIF3(3)       ====================MYC_MYB       <---------O2       --------->O2       <---------TGA1a       ======================MYC_MYB       <---------ANAC46      ------>NtERF2                                      <---------ANAC58     <---------ALFIN1                                    <---------ANAC58    ---------------->PIF3(2)                            --------->SPL7  --------->ANAC58-------->P                           --------->ALFIN1  --------->RAP2.6(2)                                 <---------SPL7  ===============MYC_MYB     --------->At4g35610     <---------ANAC46           <---------ANAC58  --------->ANAC58------>MYB46(1)                    <---------ANAC58           <---------ANAC58  --------->DREB2C(2)        <---------ZAT2          <---------ANAC58       <---------MYB52(1)  --------->ANAC46------>MYB83<---------GLK1(2)    ------>NtERF2            --------->DOF5.7(2)  ------->GAMYB <------------AtMYB84               --------->LBD16        <---------ANAC46 --------->DEAR3(2)          <---------At4g35610  <---------DEAR3(1)     <------NtERF2 --------->MYB46(3)          --------->ZAT2      <---------LBD16        --------->LBD16 --------->SPL7 --------->AtMYB61             <---------GLK1(1)         ------>NtERF2 ---At4g35610   <---------MYB111(2)           <---------ZAT2    --------->GLK1(1) -ANAC58------->MYC3  ------>MYB46(1)         <---------At4g35610      --------->ANAC46 -ANAC58<-------MYC3  ------>MYB83            --------->At4g35610     --------->MYB46(3)      ------- -->At4g35610   <---------MYB59 <-------TEIL  --------->ZAT2    <---------GLK1(1)       --------->AtMYB61 -------->HVH21 <---------MYB46(2)       <----------DOF2<-------TEIL  <---------LBD16  --------->MYB46(3)   gcgaccgccacgtggacacctacctccctccagcttcgtctcgctttgagctccggcgtgcgtcggaaatctcccgccgtttacttacgaccatcgcgat  8058900                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                                                                     <---------GLK1(2)--------->At4g35610                                                                  ------>ZmHOX2a(2)   <------NtERF2                                                                 <------ZmHOX2a(2)    <---------At4g35610                                                                <---------ARR14(2)    <-------GAMYB                                                                --------->ARR14(2)   <---------MYB46(3)                                                            <---------LBD16          ------>NtERF2                                                         --------->WRKY38(1)         <---------DEAR3(2)       <---------ARR14(2)                             <---------ANAC58              <---------DEAR3(1)      <---------GLK1(1)                               <---------ANAC58             <------NtERF2      --------->GLK1(1)              --------->At4g35610 --------->WRKY12         <-----------HVH21    <------ZmHOX2a(1)                <---------At4g35610--------->ALFIN1    ---------->DOF2 -->ATHB12                       <---------ANAC46     <---------ANAC46 <-------TEIL--------->ATERF1(1)   tggctaggaaatcgggttatggaattgtctgtgtttcgcagaagcctgaagttgatgcgtggaccggatcggattcgtcaaagtcgtcggctgataattt  8059000                 --------->DOF5.7(2)          --------->HSFB2a(1)          <---------HSFC1(2)                                           <----------TaMYB80          <---------HSFB2a(1)                                         --------->ARR14(2)          --------->HSFC1(2)                                          <---------ARR14(2)         --------->ICU4                                               ---------->TaMYB80         <---------YAB1                                           <---------TOE1(3)   <--------------    --------->ALFIN1                      <---------ZAT6          <---------TOE2(3)   <--------------  <---------ANAC46                      --------->LBD16       <---------WOX13(1)  ------->TEIL      < <---------MYB46(3) <---------TOE2(3)  --------->HSFB2a(2)  --------->ATHB12--------->LBD16     <---- --------->MYB55(2)<---------DOF5.7(2) <---------HSFB2a(2) <---------YAB1 <---------LBD16       <----   ggctgggtgggatgattccgataacgatgacaagaagtcttccagagttaagaagaagagtttgattgaaggtatatgcggatgaacatctgtttttgga  8059100                                                      ----------->GT1                                                     <---------MYB46(3)                                                   <---------At4g35610                                                   --------->At4g35610                                                   <---------ZAT2                                                   ----------->RAV1(2)                                                   --------->ZAT2     --------->AHL20(2)                          <-----------RAV1(2)     <---------AHL20(2)                 --------->ANAC55(2) ---AGL3                                <---------ANAC55(2) ---AGL2                                <---------ANAC58 ---------YAB1                          <---------ANAC58 -----GLK1(2)                           <---------ANAC46                       ------->TEIL -----ARR14(2)                       <---------ARR14(2)      --------->ICU4 <---------ATHB12     <---   ttctgattttatttttcagtgtgattcggagttttcgaggtttcgtaagaaccagctggtgaaatgtttgattacacaatgaagctaaaactatatggct  8059200  Previous    Next  AGI:  At5g23880.1    Description:  ATCPSF100/CPSF100/EMB1265/ESP5 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR); DNA binding / protein binding. Identical to Cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis Thaliana] (GB:Q9LKF9;GB:Q9FF92); similar to CPSF73-I [Arabidopsis thaliana] (TAIR:AT1G61010.2); similar to CPSF73-I, protein binding [Arabidopsis thaliana] (TAIR:AT1G61010.1); similar to CPSF73-I [Arabidopsis thaliana] (TAIR:AT1G61010.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO49431.1); similar to hypothetical protein OsJ_029214 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45731.1); similar to hypothetical protein OsI_031377 Range:  from: 8052507    to: 8058357    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g23890.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49433.1) Range:  from: 8058692    to: 8063204    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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