Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       ------>ZmHOX2a(1)                                                                                 --------->ARR11(3)                                                                                 <---------ARR11(3)                                                          <---------AHL20(2)     <---------ARR14(2)                                      <----------DOF2    --------->AHL20(2)      --------->ARR14(2)                          <---------ARR14(2)     <-----------GT1            --------->MYB46(3)                          <---------ARR11(3)   <-----------GT1             --------->ANAC58             <---------AHL20(2)       <---------DAG2<---------DAG2         --------->ANAC46        -- ----ZmHOX2a(1)           --------->ARR14(2)<---------AHL20(2)             --------->ANAC58     <---- -----TOE2(3)--------->AHL20(2)   --------->REM1(1) <----------DOF2      <-----------GT1<----------DOF2   ggataattcatctatataatttcttcaatatatgcttcaactttatttttttcactttataaaattttgacatattcacccaatatcctcctttacaaat  7987100         <---------REM1(1)        <---------TOE2(3)                   <---------ARR11(3)   ------->TEIL                      --------->ANAC46                     --------->TOE2(3)         - ----->TEIL                     <----------DOF2                           ------->GAMYB  --------->GLK1(2) -----ATHB12   --------->ARR11(3)  <-----------GT1                       --------->MYB46(3)  <-------   gaatgtatttgatgtaagaaattgtatttgaagacttttacaccatgaccttatatactagtatctatcttcttaaccacaaattagtgattatctgtca  7987200                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                 <---        <------MYB83           <---------YAB1                                  <-----------HVH21-----        <------MYB46(1)       --------->AHL20(2)                      <---------ZAT14         ------- ---------->DOF2              <---------AHL20(2)    <----------DOF2   <---------ZAT18        -------- -------->AHL20(2)<---------YAB1              --------->YAB1          --------->ZAT18    <---------AHL20(2) ----HVH21<--------P --------->ICU4        <----------DOF2            --------->ZAT14    --------->AHL20(2)   aattaaagcttggtaagtttgtgattatgcattaaaattgatagtctttcataacttttgcatttactcgagtacacaaactttcacatgtttaaataaa  7987300                                                                                    <---------ANAC46                                                                                    <---------ANAC58<    <---------AHL20(2)                                                    <---------AHL20(2)        - --------->AHL20(1)                                                       --------->AHL20(2)        - ---------AHL20(2)                                  --------->ANAC58     <---------WOX13(1)         < -------->AHL20(2)                                  --------->ANAC58   --------->ATHB12             - --------AHL20(2)                               --------->ANAC58     <---------WOX13(1)            <- ------ICU4                          --------->ANAC46         <---------ZAT18 <-----------RAV1(1)  <- ---->ICU4                           --------->ANAC58         --------->ZAT14<---------YAB1        -- -->YAB1                             --------->ANAC58  ------->TEIL--------->ATHB12 <---------ANAC58- ->AHL20(2)          <---------AHL20(2)         --------->ANAC58  --------->ICU4   <------NtERF2<----   aattattttatagggtttagtatttttttgcaaatgtaaacgcaaaactcaagcacgaacatagagtactcattgatttattgttggcgtttacatttac  7987400           --------->DAG2    <---------AHL20(2)           <---------MYB46(3)    --------->AHL20(2)       <---------TOE2(3)   --------->YAB1           ---------->DOF2  <---------YAB1           <---------AHL20(2) --------HAHB4             --------->AHL20(2) -------->ATHB51        <---------ICU4 ------->ATHB1         <---------YAB1 ---------ICU4         --------->ICU4                <----------ID1 -------->YAB1       --------->YAB1                 --------->RAP2.6(3) --------YAB1     <---------WRKY38(1)            <---------AHL20(2)          <------------CBF --------ATHB51   <---------WRKY12               ---------->DOF2       ----------->GT1 ------->ICU4    --------->WRKY18(1)        <---------ATHB12       ---------->DOF2      --------->YAB1 -------->AHL20(2)<---------WRKY45        --------->WOX13(1)<---------ARR11(3)        ------------>CBF -----YAB1---------->DOF2 <---------YAB1<------ZmHOX2a(2)   --------->ARR11(3)       ----------->RAV1(1)   aattattaaaataaaagtggtcaacataattaaagttgttagatcagtcattaaaacggcaagatgttctaaagagtaacattgaaacaacaatagtttc  7987500                                           *TSS                                           --------->LBD16                                           ------>NtERF2                                          --------->ANAC46                                         --------->MYB46(3)                                       <---------ARR14(2)                                       --------->ARR14(2)                                  ------->MYC3                                  <-------PIF5                            --------->ALFIN1                            <---------DEAR3(1)                    --------->ALFIN1  --------->GLK1(1)                  --------->TGA1a <-------MYC2                  <---------ANAC58------->PIF5                  <---------O2   -------------->OsCBT                  --------->O2   <---------ANAC58                     --------->TOE1(3)                  <---------ANAC58------->MYC2                     <<<<<<<ZML2                  <---------TGA1a<---------ANAC46            <---------ARR14(2)                 ------>NtERF2   <------NtERF2               --------->ARR14(2)                 <------NtERF2  ------>NtERF2              --------->LBD16                ------>NtERF2  <---------ANAC58           <---------HSFB2a(2)               <---------DEAR3(1)<---------ANAC58         --------->HSFB2a(2)              --------->LBD16  <---------ANAC58           --------->LBD16              <---------LBD16  <---------ANAC46           --------->ANAC46            <---------LBD16--------->ATERF1(1)           <---------HSFB2a(2)    --------->WOX13(1)--------->ALFIN1<---------GLK1(1)  --------->HSFB2a(2)  ------------>CBF<---------ANAC46<-------MYC3           <---------LBD16                          >>>   aagtatcaattagtcccgcggcgtgtggcgatggcgcgtggtatccgccaaaaacccttcccggaactagaaccctaacttctctgcaagtctctctgtt  7987600                                                                                                   --                                                                                                   <-                                                                                                 ----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                               <-----------GT1                          <---------ANAC58                                   --------->YAB1                                     <---------YAB1                   <---------TOE2(3)      --------->ICU4                     --------->ALFIN1 <------  <-----------GT1 ---------->DOF2 <---------ATHB12<---------DAG2             <-----------RAV1(1)<---- >>>>ZML2<-----------GT1          --------->ICU4------->TEIL  <---------AtLEC2 --------->ALFIN1<-----   ctagtcacaattcactgaattaaagtttgaaaacccatgatgaaatgttgaacctttccaatttccatggcgatttcaagtgtgggttttgcttgcagat  7987700          --------------->AtSPL3     ----------->RAV1(2) ---->ZmHOX2a(1) ---------DOF2 -->ZmHOX2a(2) --->ARR11(3)                                                                        <---------MYB52(1) --->ARR14(2)                                      --------->AHL20(2)           --------->GLK1(2) ----GLK1(2)                               --------->ZAT18               <---------AHL20(2) --->AGP1 --------------->AtSPL8        <------MYB83                    <---------AHL20(2) ----ARR14(2)                           <------MYB46(1)                 --------->AHL20(1) ---GLK1(1)                             ----------->GT1        --------->AGP1  <---------GLK1(2) ---At4g35610                      <---------HSFB2a(2)         --------->ARR14(2)  ----------->GT1 --ZmHOX2a(2)                --------------->AGL15 <---------AHL20(2)   <---------AHL20(1)         <- ----ARR11(3)      --------->ZAT14 --------->HSFB2a(2)    ------->TEIL  --------->AHL20(2)      <----   ccttttcccctgttcgtactctccagtctcactgcttatggaaggtgaactatttatatgaaccagttctacaatttattcgattctgttatatgttttt  7987800                                       <---------ALFIN1                              <-------TEIL<-----------RAV1(1)                             --------->ARR14(1)                                           -----------                             --------->CCA1(2)   --------->At4g35610                     --------->ANAC58                            <---------ARR14(2)   --------->ZAT2                         <---------LBD16  --------->TOE2(3)         --------->ARR11(1)   <---------At4g35610        <---------At4g35610  --------->YAB1            --------->ARR14(2)   <---------ZAT2             --------->At4g35610 ---------DOF2              <---------GLK1(2) <---------At4g35610         <-----------RAV1(2)       - -------GT1      <-----------GT1----------->GT1<---------RAP2.6(2)      <-----------HVH21--------->ANAC58   actttcttaattcgattttttacgctctcagatacggttcaacactgttgctgctgcaattgagacaatggatgagtcagatggttttgccacggacagt  7987900                                            --------->ATHB51                                            --------->ATHB12                                 --------->TOE1(3)                                --------->At4g35610                                <---------At4g35610                           --------->ANAC58 <---------ICU4                                   <-------     --------->ANAC58      --------->ANAC58--------->ICU4                          --------->YAB1     --------->ANAC58  ------->TEIL        <---------YAB1                      ------>ZmHOX2a(1) >HVH21           <---------At4g35610      <---------ATHB51         >>>>>>>>>>>>>>>>>LFY<---------YAB1 ----->ZmHOX2a(2) --------->At4g35610   <-------TEIL              --------->WOX13(1)  <---------ICU4   gatcgtcaagacaaggtttctgatgaaccaagtaagcttaagtccataattgaactggaattagtcatcaatccattgttcctactcataatgttagggt  7988000  Previous    Next  AGI:  At5g23690.1    Description:  polynucleotide adenylyltransferase family protein. similar to polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G48830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68671.1); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646) Range:  from: 7987543    to: 7990550    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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