Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       ------>MYB46(1)                                                     ------>MYB83                  --------->YAB1                                                    --------->ANAC46          --------->ZAT18                                                    --------->ANAC58          <---------ZAT18               --------->At4g35610                  --------->ANAC58       <---------MYB46(3)            <---------At4g35610           <----------DOF2                  <------MYB46(1)     ------>ZmHOX2a(1)                  ---------->ID1                     <------MYB83    --------->TOE2(3)                  <-----------GT1                    <---------TOE1(2)   <-----------------AGL3           <---------AHL20(2)                    <---------DEAR3(1) -------->GLK1(1)              <---------ARR11(3)  <---------MYB55(2)     <---------AtMYB61 ---------GLK1(1)           ----------->RAV1(1)    --------->MYB46(3)    <---------MYB52(1)   agaaatccttatttggctgctatagaagaacaacatatttttttctttttccaccagccattctcccatctactcgttggtgcaatattcacatggaaaa  7981200                                                                 ----------->HVH21                                                             <---------TOE1(3)                                                             <---------TOE2(3)                                              <---------------AGL15                       ------>MYB46(1)                                              --------------->AGL15                       ------>MYB83                                             ----------------->AGL2                     <---------MYB59                                             <-----------------AGL3                     ------->GAMYB                                  --------->AHL20(2) ----------->GT1      <---------AHL20(2)        ---------->DOF2 --------->TOE2(3)  --------->ZAT6   --------->MYB52(1)         --------->ANAC46       <---------AHL20(2)      --------->YAB1----------------->AGL3      --------->AHL20(2)        <-   cagttggatttaaaggagattacaaaacttaattcataaaatcgaactctatatatggaaattaagggtgacatattaaatgcaattcaacccaactaaa  7981300                                                                  <---------AHL20(2)                                                                  <---------ICU4                                                                 --------->AHL20(2)                                                                 <---------ATHB12                                                               --------->YAB1                                                            --------->YAB1                                                           --------->ZAT6                                                         --------->YAB1                                                  <---------AHL20(1)                                                  --------->AHL20(1)                      --------->YAB1              <---------ARR11(3)                 ------------>CBF                 --------->ARR11(3)                 <---------ATHB12    --------->ANAC58   <---------YAB1        ------->GAMYB<---------ATHB12--------->AtLEC2 --------->YAB1         <----------DOF2  -------       --------->MYB46(3)     --------->YAB1     --------->AHL20(2)    <---------YAB1        -------- ----------RAV1(1) --------->WOX13(1)--------->ANAC58<---------YAB1 --------->ICU4---------->ID1   aatgttgcaaccgaaacaaatcaatcaaactaaaataacatgcaagtccaaatatatcataatactaataaatatgattcttttgtctcattaagcatct  7981400                      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <--------P               ======================================MYC_MYB             <---------MYB46(3)            xxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxx>smallRNA(s)        <---------ZAT14        --------->ZAT14       <---------REM1(1)       <---------ANAC46 xxxxxxxxxxxxxxxxxx>smallRNA(se3) *TSSxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s)========================bZIP_DOF xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i)<----------DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(se3)            <---------O2 xxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------TGA1a xxxxxxxxxxxxxxx>smallRNA(fl3)             ===============================================bZIP_DOF xxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->ZAT2 xxxxxxxxxxxxxxx>smallRNA(le3)             <---------ZAT2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------->RAV1(2) xxxxxxxxxxxxxxxxx>smallRNA(se3)        ----------->HVH21 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(s) --------->TOE2(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------>ZmHOX2a(1)         --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->TOE2(2)          <---------ARR14(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->TOE1(2)     --------->LBD16 xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<---------ARR14(2)      --------->LBD16   <-----------GT1 ---->RAV1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)  <----------DOF2     <- ->GLK1(2)<---------ANAC46<------ZmHOX2a(1)--------->O2  <---------LBD16 <---------AHL20(2)       ---   ggttctatggtgtagtggttagcactcaggactttgaatcctgcgacctgggttcgactcccggtagaacctcatttttttctttctccaaactaaattt  7981500                                                                           --------->TOE2(3)                                                                          ----------->GT1                                                                          --------->ANAC58                                                                          --------->ANAC55(1)                                                                          --------->ANAC55(2)                                                                          <---------ANAC55(2)                                                                          --------->ANAC58                                                                         <-------TEIL<----------DOF2                                                                        --------->ARR14(1)                                                                        --------->CCA1(2)                            --------->YAB1                    --------->ANAC46---------->DOF2                       <---------At4g35610            <---------ZAT14  <---------ARR14(2)        <---                       --------->At4g35610            --------->ZAT18  --------->ARR14(2)        <---           --------->MYB52(1)                         --------->ZAT14  <---------ARR11(3)    <------- --------TOE2(3)    <---------At4g35610               <---------ZAT18  --------->ARR11(1) <---------ANAC58 ------->DOF2   <-----------HVH21                 --------->ATHB12   ----------->ARR10    <---------ANAC58   taaagttctaaacaaacaggtcatcagctatcacatttgggcctagtttgaattagtggactccaaggcccaagatacgtaaaatcgctatttcgtttta  7981600                                  --------->AHL20(2)                                  <---------AHL20(2)                               --------->AHL20(2)                               --------->AHL20(1)                           <---------AHL20(2)---------->DOF2                             --------->ANAC46                 --------------->AtSPL3   --------->AHL20(2)            <---------ARR14(2)    ---------->DOF2       --------->AHL20(2)*TSS                        --------->ARR14(2) ------TOE2(3)   --------------->AtSPL8   <---------AHL20(2)         ------>ZmHOX2a(2)  <---------LBD16 ------TOE1(3) <-----------GT1 <---------AHL20(1)         ----------->GT1<------ZmHOX2a(2)  --------- ---DOF2  --------->AHL20(2)  <---------AHL20(2)  ---------->DOF2<---------YAB1        --------->MYB52(1)   aggttctaaagataaattatctgtactattaaatattttaatattaaaaaagaaaagaaatggttttatgatccgatcccttctcaatctcacggagggg  7981700                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                --------->ARR14(2)                                                                          <-----------GT1       <----       ------>ZmHOX2a(1)                                               <---------GLK1(2)      -------  <---------GLK1(2)                                                  <---------KAN4(2)        <------ >ALFIN1        <---------CCA1(2)            <----------DOF2    ----------->GT1 <---------ARR14(2)   aaaagattcctccaattcaaatctctgtctgtgtctctgtctctcaactttcaatttctgagagagtcggaaatattctccagatcgcctaaggcaaatt  7981800                      <------NtERF2                     ------>NtERF2                    --------->DEAR3(1)                    <---------DEAR3(1)       --------->ARR14(2)      --------->ARR14(2)      <---------GLK1(2)                                  --------->LBD16      <---------ARR14(2)                               <---------LBD16                    --------->YAB1  <-----------------AGL1                            ----------->HVH21       <---------MYB52(1) ---TEIL   ------>NtERF2       <------ZmHOX2a(1)   <---------WOX13(1)       <---------ARR14(2) -->ARR14(2)       --------->ATERF1(1)           --------->ATHB12<----------ID1          <---------YAB1 ---ARR14(2)     ----------->HVH21  <------ZmHOX2a(1)<---------WRKY18(1)   <---------RAP2.6(3) <-----   cgttttccgattcggcctagcgacggcgagagaggagaggaagaggcaagttgattgaccggagaagaagacgaagccgttcttggagaaaatgataacg  7981900                         ------>MYB83                                                     <---------MYB46(3)                         ------>MYB46(1)                                                  <---------AtMYB61                       <---------MYB111(2)                 <---------At4g35610     --------->ATHB12                 --------->ARR14(2)                        --------->ZAT2    <---------MYB52(1)                 <---------ARR14(2)                        <---------ZAT2   --------->LBD16                 ------->TEIL                              --------->At4g35610   <----------DOF2 <---                <---------CCA1(2)                        <---------WRKY38(1)<-----------HVH21 <------            --------->At4g35610                  <---------ANAC58   <---------GLK1(1)    <---------WOX13(1)          --------->MYB46(3)   --------->At4g35610     <-----------HVH21   <---------ANAC58<------MYB83        <-----------GT1<---------MYB46(2)        <---------ANAC58   --------->GLK1(1)  --------->ATHB12  ------>ZmHOX2a(1)    <---------MYB111(1)   <----------DOF2    --------->LBD16<---------DEAR3(2)---- --------->TOE2(3) --------->MYB46(3)  <---------WOX13(1)<---------WRKY12  <---------ANAC58<------MYB46(1) ----YAB1<---------At5g28300   <---------At4g35610<----------DOF2  <---------ARR11(3)<---------WOX13(1)   attccttatttaaccgctgtatccacctacttcagctatggattgctctttgcttttggtcagctccgagatttcttccgtcgcttcattgattggtggt  7982000     --------->WOX13(1)  --------->ANAC58                                  --------->ALFIN1                    <---------YAB1  --------->ANAC58                         <-------TEIL                       <----------DOF2  ------ ------ZAT18                               ------->TEIL    --------------->AtSPL8 <---------YAB1 ---MYB46(3)  --------->ARR14(2)       <---------------AtSPL8                 <---------DAG2   ------ ----->ZAT18--------->LBD16          <---------AHL20(2) <------ZmHOX2a(2)  <-----------GT1   <-------   tcactagcaatctccaggtctgtctgttttctccagtatataatgtacgtagatgtggatcaatgtacaagtttgtttaactttatgcttcttattccgg  7982100  Previous    Next  AGI:  At5g23665.1    Description:  pre-tRNA. tRNA-Gln (anticodon: TTG) Range:  from: 7981401    to: 7981472    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g23670.1    Description:  LCB2 (Serine palmitoyltransferase LCB2 (long chain base) subunit gene); protein binding / serine C-palmitoyltransferase. similar to serine C-palmitoyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G48780.1); similar to serine palmitpoyltransferase subunit2 [Nicotiana tabacum] (GB:BAE96963.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68365.1); similar to serine palmitoyltransferase [Solanum tuberosum] (GB:CAB44316.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro do Range:  from: 7981644    to: 7985394    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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