Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------ANAC58                                                 <---------AtLEC2                                                 <---------ANAC58                                                <-------TEIL                                             <------MYB46(1)                                             <------MYB83                                            --------->MYB55(2)                                            <---------MYB46(3)                                            --------->MYB111(1)                                            <---------AtMYB61                                            --------->MYB46(2)                                            <---------DEAR3(1)                                           <--------P                                          <-------GAMYB                                         <------MYB83                                         <------MYB46(1)                                         <---------MYB46(3)                                         --------->ATHB12                                      <---------ANAC58                                              -                                 ------>ZmHOX2a(1) --------->AtLEC2                                 <          ----------->GT1    <-----------GT1--------->MYB111(2)       <-----------GT1              --          <----------ID1 <---------AHL20(2)<---------MYB55(1)        <-----------GT1               --         ----------->GT1<---------YAB1<---------ANAC58     --------->YAB1<----------DOF2        -----   cgaaatttgagaaggaaaaattgatttttattttcctctcgcttggttggtgcatgcacgatgaaaatgttttatctttttttttttttctctcaaaaac  7981000                                                                                         ------>ZmHOX2a(1)          <---------CCA1(2)                                                          <---------ARR14(2)  ----------->HVH21                  <-----------GT1<----------ID1                   --------->ARR14(2) -------->O2                      --------->ANAC55(2)                               --------->GLK1(1) ---------O2             ----------->GT1          ---------->DOF2         ----------->RAV1(1)       < ---->MYB83------->TEIL<---------ZAT14        <---------YAB1           --------->ANAC46 --------->TOE2(3) ---->MYB46(1)        --------->ALFIN1     <----------DOF2     <----------DOF2      <---------CCA1(2) ---->DEAR3(2) --------->MYB52(1) <---------ANAC55(2)       --------->GLK1(2)--------->YAB1         -   cgacttgacattgtatctatcggagtgttgtaaattatgtaacctcttttgataaagacgagactctttttcatcgcaacaatgacatatcctaattctt  7981100                                                     ------>MYB46(1)                                                     ------>MYB83                  --------->YAB1                                                    --------->ANAC58          <---------ZAT18                                                    --------->ANAC46          --------->ZAT18               --------->At4g35610                  --------->ANAC58       <---------MYB46(3)            <---------At4g35610           <----------DOF2                  <------MYB83     ------>ZmHOX2a(1)                  ---------->ID1                     <------MYB46(1)    --------->TOE2(3)                  <-----------GT1                    <---------DEAR3(1)   <-----------------AGL3           <---------AHL20(2)                    <---------AtMYB61 ---------GLK1(1)              <---------ARR11(3)  --------->MYB46(3)     <---------TOE1(2) -------->GLK1(1)           ----------->RAV1(1)    <---------MYB55(2)    <---------MYB52(1)   agaaatccttatttggctgctatagaagaacaacatatttttttctttttccaccagccattctcccatctactcgttggtgcaatattcacatggaaaa  7981200                                                                 ----------->HVH21                                                             <---------TOE1(3)                                                             <---------TOE2(3)                                              --------------->AGL15                       ------>MYB83                                              <---------------AGL15                       ------>MYB46(1)                                             ----------------->AGL3                     <---------MYB59                                             <-----------------AGL3                     ------->GAMYB                                  --------->AHL20(2) ----------->GT1      <---------AHL20(2)        ---------->DOF2 --------->TOE2(3)  --------->ZAT6   --------->MYB52(1)         --------->ANAC46       <---------AHL20(2)      --------->YAB1----------------->AGL2      --------->AHL20(2)        <-   cagttggatttaaaggagattacaaaacttaattcataaaatcgaactctatatatggaaattaagggtgacatattaaatgcaattcaacccaactaaa  7981300                                                                  <---------ICU4                                                                  <---------AHL20(2)                                                                 <---------ATHB12                                                                 --------->AHL20(2)                                                               --------->YAB1                                                            --------->YAB1                                                           --------->ZAT6                                                         --------->YAB1                                                  <---------AHL20(1)                                                  --------->ARR11(3)                      --------->YAB1              --------->AHL20(1)                 <---------ATHB12                 <---------ARR11(3)                 ------------>CBF    --------->ANAC58   <---------YAB1        ------->GAMYB<---------ATHB12--------->AtLEC2 --------->YAB1         <----------DOF2  -------       --------->MYB46(3)     --------->YAB1     --------->AHL20(2)    <---------YAB1        -------- ----------RAV1(1) --------->WOX13(1)--------->ANAC58<---------YAB1 --------->ICU4---------->ID1   aatgttgcaaccgaaacaaatcaatcaaactaaaataacatgcaagtccaaatatatcataatactaataaatatgattcttttgtctcattaagcatct  7981400                      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               ======================================MYC_MYB               <--------P             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxx>smallRNA(s)        --------->ZAT14        <---------ZAT14       <---------REM1(1)       <---------ANAC46 xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(le3) *TSSxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s)========================bZIP_DOF xxxxxxxxxxxxxxxx>smallRNA(i)<----------DOF2      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)              xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->O2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------TGA1a xxxxxxxxxxxxxxxxx>smallRNA(se3)           ----------->RAV1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ===============================================bZIP_DOF xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ZAT2 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ZAT2 xxxxxxxxxxxxxxxxxx>smallRNA(si3)       ----------->HVH21 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(se3)     ------>ZmHOX2a(1)         <---------ARR14(2) xxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(s) --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->TOE1(2)          --------->ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(se3)      --------->TOE2(2)     --------->LBD16     <----------DOF2 ---->RAV1(2)<---------MYB46(3)   <---------ARR14(2)      --------->LBD16   <-----------GT1        <- ->GLK1(2)<---------ANAC46<------ZmHOX2a(1)<---------O2  <---------LBD16 <---------AHL20(2)       ---   ggttctatggtgtagtggttagcactcaggactttgaatcctgcgacctgggttcgactcccggtagaacctcatttttttctttctccaaactaaattt  7981500                                                                           --------->TOE2(3)                                                                          --------->ANAC58                                                                          --------->ANAC55(2)                                                                          ----------->GT1                                                                          --------->ANAC55(1)                                                                          <---------ANAC55(2)                                                                          --------->ANAC58                                                                         <-------TEIL<----------DOF2                                                                        --------->CCA1(2)                                                                        --------->ARR14(1)                            --------->YAB1                    --------->ANAC46---------->DOF2                       --------->At4g35610            <---------ZAT14  --------->ARR11(1)        <---                       <---------At4g35610            --------->ZAT14  --------->ARR14(2)        <---           --------->MYB52(1)                         <---------ZAT18  <---------ARR14(2)    <------- --------TOE2(3)    <---------At4g35610               --------->ZAT18  <---------ARR11(3) <---------ANAC58 ------->DOF2   <-----------HVH21                 --------->ATHB12   ----------->ARR10    <---------ANAC58   taaagttctaaacaaacaggtcatcagctatcacatttgggcctagtttgaattagtggactccaaggcccaagatacgtaaaatcgctatttcgtttta  7981600                                  <---------AHL20(2)                                  --------->AHL20(2)                               --------->AHL20(1)                               <---------AHL20(1)                           <---------AHL20(2)---------->DOF2                             --------->ANAC46                 --------------->AtSPL8   <---------AHL20(2)            --------->ARR14(2)    ---------->DOF2       --------->AHL20(2)*TSS                        <---------ARR14(2) ------TOE1(3)   --------------->AtSPL3   --------->AHL20(2)         ------>ZmHOX2a(2)  <---------LBD16 ------TOE2(3) <-----------GT1 --------->AHL20(2)         ----------->GT1<------ZmHOX2a(2)  --------- ---DOF2  --------->AHL20(2)  <---------AHL20(2)  ---------->DOF2<---------YAB1        --------->MYB52(1)   aggttctaaagataaattatctgtactattaaatattttaatattaaaaaagaaaagaaatggttttatgatccgatcccttctcaatctcacggagggg  7981700                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                <---------ARR14(2)                                                                          <-----------GT1       <----       ------>ZmHOX2a(1)                                               <---------GLK1(2)      -------  <---------GLK1(2)                                                  <---------KAN4(2)        <------ >ALFIN1        <---------CCA1(2)            <----------DOF2    ----------->GT1 --------->ARR14(2)   aaaagattcctccaattcaaatctctgtctgtgtctctgtctctcaactttcaatttctgagagagtcggaaatattctccagatcgcctaaggcaaatt  7981800                      <------NtERF2                     ------>NtERF2                    --------->DEAR3(1)                    <---------DEAR3(1)       --------->ARR14(2)      <---------ARR14(2)      <---------GLK1(2)                                  --------->LBD16      --------->ARR14(2)                               <---------LBD16                    --------->YAB1  <-----------------AGL1                            ----------->HVH21       <---------ARR14(2) ---TEIL   ------>NtERF2       <------ZmHOX2a(1)   <---------WOX13(1)       <---------MYB52(1) -->ARR14(2)       --------->ATERF1(1)           --------->ATHB12<----------ID1          <---------YAB1 ---ARR14(2)     ----------->HVH21  <------ZmHOX2a(1)<---------WRKY18(1)   <---------RAP2.6(3) <-----   cgttttccgattcggcctagcgacggcgagagaggagaggaagaggcaagttgattgaccggagaagaagacgaagccgttcttggagaaaatgataacg  7981900  Previous    Next  AGI:  At5g23665.1    Description:  pre-tRNA. tRNA-Gln (anticodon: TTG) Range:  from: 7981401    to: 7981472    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g23670.1    Description:  LCB2 (Serine palmitoyltransferase LCB2 (long chain base) subunit gene); protein binding / serine C-palmitoyltransferase. similar to serine C-palmitoyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G48780.1); similar to serine palmitpoyltransferase subunit2 [Nicotiana tabacum] (GB:BAE96963.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68365.1); similar to serine palmitoyltransferase [Solanum tuberosum] (GB:CAB44316.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro do Range:  from: 7981644    to: 7985394    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version