Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                   <-----------RAV1(1) <---------YAB1                        --------                       <---------At4g35610           --------->YAB1                       <---------WOX13(1)                       --------->At4g35610           <---------ICU4                     --------->ATHB12                      <---------AGP1              --------->YAB1                     <----------DOF2<                   --------->HSFB2a(2)       <---------HSFB2a(1)              <----------DOF2<------- --GT1             <---------HSFB2a(2)      --------->GLK1(2)                 <----------------------   ccattagagtttgatttcggtctagagctgtgaggttttgttggagaacctttgatcatgactgaaacggagtcgttttccttttttctttcattgatct  7937300    <----------DOF2           --------->HSFB2a(2) >ZmHOX2a(2)           <---------ARR14(2)                                    <---------STY1(2) ->ARR11(3)            --------->ARR14(2)                                    --------->STY1(2) ---------ZAT18     <---------AHL20(2)           <-----------GT1            --------->ANAC58 --ARR11(3)         --------->AHL20(2)        <---------ICU4                --------->ANAC58  ------- --ANAC81     <------NtERF2   <---------HSFB2a(2)<---------AHL20(2)     --------->ZAT6     --------->YAB1   tgtgaactttcaaggtgccaaataaaatccgtctggaaaacagttcaatatttacatgtttagttattgtatatacactagccagaagtctaaacataaa  7937400                                                                      --------->ATHB12                                                                     --------->ICU4                                                      --------->YAB1 <---------YAB1                             --------->AHL20(2)  <---------TOE2(3) <---------bZIP60(1)                    --------->DAG2        <---------MYB59  --------->ZAT6                  <---------AHL20(2)   <---------------------WRI1<---------AHL20(2) <-----------GT1    --------->bZIP60(1)    --------->AHL20(2) --->DOF2          ---------->DOF2        ------->GAMYB  <-----------GT1    <---------AtLEC2   acgaaaactataagctctaagtaaagtagatttatattatgcaaccgaattaacaatattaacacaatgacatgatttgcattgtaatgaaatttaaaat  7937500                                                                          <------------CBF                                                                         -------->ATHB1                                                                         --------->ATHB51                                                                         <---------ICU4                                                                         --------->ATHB12                                                                        <---------ATHB51                                                                  <------MYB83                -------                                                                  ----------->GT1    --------->AHL20(2)                                               <---------LBD16    <------MYB46(1) <---------YAB1                                     <----------DOF2           >>>>>>>>>CBP60g   ------------>CBF                                  <---------AHL20(2) --------->ATHB12   --------->ICU4--------->AHL20(2)              ----------->GT1     <-----------GT1   ----------->ARR10------------>ATHB5    ----------       --------->AHL20(2)  ----------->GT1<---------YAB1       >>>>>>>>>SARD1<---------MYB46(3)     <   tttgacaaaaaaaatatggaaattcaaattggttattaacttttatttttggggatgatttggaaatttggtgaattattggttacaataaataaaagga  7937600                              <---------------AGL15                              --------------->AGL15                             <------NtERF2                             ----------------->AGL1                            ------>NtERF2                           <---------ANAC46                         <-----------HVH21                              *TSS                    --------->ICU4                            <---------ANAC58 ---->GT1      --------->ANAC55(2)                            <---------ANAC58 >DOF2 <------ZmHOX2a(1)<-----------RAV1(1)    <------ZmHOX2a(2)       ---------->DOF2 ------------CBF <---------AHL20(2)  ----------->GT1          <---------ANAC46   aatattgaaggacttatatgtaattagtgtcgcctaatcgagtaattcgatccatcttcgtctgtcttgttaacaaagaaaactgagaaaggttttctta  7937700                                                                                                    <                                                                                                    -                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                             <-------                                                                                          --------->HSFB2a(1)                                                                                          <---------HSFC1(2)                                                                                          <---------HSFB2a(1)                                                                                          --------->HSFC1(2)                                                                                         --------->GLK1(2)                                                                                         <---------ARR11(3)                                                                                         <---------ARR14(2)                                                                                         --------->ARR11(3)   ------>ZmHOX2a(2)                                                 <---------YAB1      <-----------ARR10  <------ZmHOX2a(2)                                              <-----------------AGL3  --------->ARR14(2) <---------ARR14(2)                                             --------->At4g35610     <---------GLK1(2) --------->ARR14(2)                                      <---------ICU4           <---------ZAT14 <-- <---------ARR11(3)                                     <---------ATHB12          --------->ZAT14<--- --------->ARR11(3)          <----------ID1      <----------ID1 <---------At4g35610     <---------ARR14(1)   taagatcccattcttgtagcaaaaacccagaagaacaaactttcgaagaagacgactaatcaattcatctgattatggagagactacagagaatcttcgg  7937800         <----------DOF2       <---------MYB46(3)      <---------ANAC46      <---------ANAC58      <---------RAP2.6(2)      <---------DEAR3(1)      <---------ANAC58     <------NtERF2    <---------ERF1<---------ANAC55(2)   --------->ALFIN1   <---------DEAR3(1)    ----------->RAV1(2) ---------MYB46(3)--------->ANAC58 -------->ALFIN1  --------->ANAC46 -------At4g35610 --------->ANAC55(2) ------>ZAT2  <-----------HVH21 ------>At4g35610 --------->ANAC55(1)                                                              -- --LBD16<-------GAMYB------->TEIL                      <-----------RAV1(2)                         -- -------ZAT2--------->MYB59  <---------GLK1(2)<-------TEIL                              <---------ARR11(3) ------ARR14(2)   --------->ANAC58  ------>NtERF2     <---------ZAT2               ------>ZmHOX2a(1)   agctggtggcggtttaggtcacgcatcgcctgattctccgactctcgatacatcggagcaggtttacatctcttctctcgctctcctcaagatgcttaag  7937900       --------->WOX13(1)      <---------ICU4                                    --------->ARR11(3)     <---------ATHB12                                 <---------YAB1                         <------- --------->At5g28300 <---------ARR11(3)   <---------ANAC46                                 ------>ZmHOX2a(1) ------->ANAC58    --------->ANAC58       <---------ANAC58                              ---------->ID1 ------->ANAC58    --------->ANAC58       <---------ANAC58    ---------->ID1    <-----------GT1     <   cacggtaatcaatccaaacccaagctctaatttagtcttctcttgcttagggttttatgattttgtctcgttctctgtgattttactctcgtcctctttt  7938000                                                                              ====================HOX2a_HOX2a                                                                              ------>ZmHOX2a(2)                                                 --------->ARR14(2)           =======================      --------->ZAT6                             <---------ARR14(2)        --------->ATHB12 --------->HSFB2a(2)                           --------->LBD16      --------->YAB1             ------ <---------HSFB2a(2)                         <---------LBD16      <---------TOE2(3)        <------ZmHOX2a(1) ---DOF2                              <-------TEIL              <---------AHL20(2) <---------KAN4(1) ---------LBD16          ------>ZmHOX2a(2)---------->DOF2      --------->AHL20(2)  --------->KAN4(1)   gctctggaactctagggttttattcgatctgtttctgagattcaaaatgcggatttgagtagagatttaatgaaaattgatcggaatattgcaggaagag  7938100                                                                --------->ALFIN1                                                                <---------MYB46(3)                             <---------ANAC58                  --------->ALFIN1                             <---------ANAC58                 <-------GAMYB                             <---------ANAC46               <---------TOE1(3)       ------>ZmHOX2a(1)    --------->ATHB12                <---------TOE2(3) =============HOX2a_HOX2a  <---------YAB1                <---------MYB52(1)                --------->ALFIN1 --->ARR11(3)          <---------WOX13(1)          <---------ZAT14<---------ANAC46------>NtERF2     <   ctggtgttcctatggaagtcatgggattgatgcttggagagtttgtggatgaatacactgttagggttgtggatgtttttgcgatgcctcagagtggtac  7938200  Previous    Next  AGI:  At5g23535.1    Description:  KOW domain-containing protein. similar to 50S ribosomal protein L24, chloroplast (CL24) [Arabidopsis thaliana] (TAIR:AT5G54600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22554.1); contains InterPro domain Ribosomal protein L24; (InterPro:IPR003256); contains InterPro domain Translation protein SH3-like (InterPro:IPR008991); contains InterPro domain KOW (InterPro:IPR005824); contains InterPro domain Ribosomal protein L24/L26, conserved site; (InterPro:IPR005825) Range:  from: 7935404    to: 7937375    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g23540.1    Description:  26S proteasome regulatory subunit, putative. Identical to 26S proteasome non-ATPase regulatory subunit 14 (RPN11) [Arabidopsis Thaliana] (GB:Q9LT08;GB:Q8LD11); similar to AJH2/CSN5/CSN5B (COP9-SIGNALOSOME 5B), protein binding [Arabidopsis thaliana] (TAIR:AT1G71230.1); similar to unknown [Populus trichocarpa] (GB:ABK95816.1); contains InterPro domain Mov34-1 (InterPro:IPR003639); contains InterPro domain Mov34/MPN/PAD-1 (InterPro:IPR000555) Range:  from: 7937672    to: 7939578    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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