Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------ICU4                                                     --------->ATHB12      ------>ZmHOX2a(2)                                                    --------->ICU4       --------->ARR11(3)                            --------->YAB1   ---------->DOF2     <-------TEIL                 --------->ANAC58         >>>>>>>>>MYB2        --------->ARR14(2)                 --------->ANAC58   ----------->GT1 <---------YAB1       <---------ARR11(3)                 --------->ANAC46 --------->ALFIN1--------->CCA1(2)      <-----------ARR10         <-   gactatgagacgatgaaacacacaatacaataagaaggggggaaaaccaaagagatgattaccgagattcactctgatcttagcatcgagactgcaattg  7889800                                                                                         <---------DOF5.7(2)                                                                                         ---------->DOF2                                                                                       --------->DOF5.7(2)                                                                                      --------->TOE2(3)                     --------->ZAT14                                                 --------->YAB1                  <---------At4g35610       --------->ZAT14  --------->ANAC46       <---------ATHB12                  --------->At4g35610  <---------ZAT14   <<<<<<<<<GATA-2       --------->ANAC58           --------->ANAC46    <-----------GT1           <<<<<<<<<GATA-1       --------->ANAC58------       ---------->DOF2<---------ALFIN1------>ZmHOX2a(1)  <<<<<<<<<GATA-3     --------->GLK1(1)------- --------AtLEC2 --------->REM1(1)    --------->TOE2(3)   <<<<<<<<<GATA-4<---------YAB1--------->TOE1(3)   tgcatgcttataagcgctacagctacactcttgttacatccttcactgtaatcgattcaatccacagaaaacttatgagaaacccaatcgttaaagctgt  7889900                                                           <---------DEAR3(2)                                                         <---------MYB52(1)                                                        --------->LBD16                                                       <---------ANAC46                               ------>ZmHOX2a(2)   --------->KAN4(2)                              <<<<<<<<<GATA-1     --------->HSFB2a(1)                              <<<<<<<<<GATA-2     <----------TaMYB80                              <<<<<<<<<GATA-3     --------->KAN4(1)        <---------AHL20(2)    <------ZmHOX2a(2)   <---------HSFB2a(1)       <---------ATHB12       <<<<<<<<<GATA-4     <---------KAN4(1)  --------->TOE2(3)          <---------ARR11(3)  ---------->TaMYB80                               ---  --------->TOE1(3)          --------->ARR11(3)  <---------KAN4(2)                                === --->At5g28300               <---------AGP1      --------->ARR14(2)      --------->ANAC58   ========= ---->GT1                   <---------CCA1(2)   <---------GLK1(2)        --------->ANAC58   ---------   aaaaccctaataaatctgaaataaaaacctagatctctaaattcgaaacagaatattccgtcgattcaacagattaagcaagtagaactcaccagagagc  7890000                       <---------SPL7                      <---------bZIP60(1)                      --------->ANAC58                      <---------ANAC46                      --------->bZIP60(1)                      --------->ANAC58                      <---------TGA1a                                              <---------ANAC46                      --------->O2                                                 <---------ANAC58                      <---------O2                                                 <---------ANAC58            <----------DOF2                                                       <-------TEIL            ====================bZIP_DOF                                       <---------ANAC58        <---------ANAC58              <-----------RAV1(1)                      <---------ANAC58 ------->DOF2         --------->TGA1a --------->ALFIN1                        <---------AtMYB61 ===============================bZIP_DOF                                    <----------DOF2 ===============================bZIP_DOF   <---------ANAC46            ------>ZmHOX2a(1) ->DOF2 <---------ANAC58  --------->DAG2  <---------At4g35610          <---------At4g35610      -----   gaaagcgcttccgtctttagcgcgacgtaaggtagtagaagtgttgctgctagtctcggcttcgactctcttcctctgctttggtgcgtttgaagttgtc  7890100                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                 --------->HSFB2a(2)                                          --------->ARR11(3)     <---------HSFB2a(2)                                          <---------ARR11(3)     --------->HSFC1(1)                                         --------->RVE1(1)<---------ANAC46                                   ----------->GT1        <---------ANAC58                                  <------ZmHOX2a(2)     <-----------GT1                               <---------YAB1       --------->AHL20(1)                  <---------DAG2 <---------ARR11(3) --------->ARR11(3)     --------->ANAC58       <---------MYB52(1)      <---------ARR11(3)     --------->ANAC58      <-------GAMYB --------->CCA1(1)<---------ANAC58 ---->ETT(2)      <----------DOF2--------->ARR11(3) <---------AHL20(1)             *TSS             <   gatggtccagccatttcttcctttttctcggttaagatcgaaaatatctgtgaatatttttcgtgttcgagaattcgattcgatgagaaacgtttgagag  7890200                                                                          --------->LBD16                                                                         <---------LBD16                                                                         --------->TOE1(2)                                                                 --------->GLK1(2)                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)              --------->DAG2                                    --------->WOX13(1)     <----------DOF2             --------->DAG2                                   ------------>CBF         ==============            ---------->DOF2         --------->ANAC58          <------NtERF2--------->LBD16       ----   --------->ALFIN1                 --------->ANAC58         ------>NtERF2--------->ANAC46     ====== ---------DEAR3(1)  <------ZmHOX2a(1)                 <---------MYB52(1)------>ZmHOX2a(2)      <-----   actcggtggagaagaaaagggaggaaaatgagagggaaacgaaacttgttttctcagttatggcgccaatctgatcccgcgatactgtgtttttaggctt  7890300                  <---------ANAC58             ===========================MYC_MYB             ===========================================bZIP_DOF             <---------TGA1a             <---------bZIP60(2)             <---------ANAC58             <---------ANAC46             <---------ANAC58             <---------O2                                               --------->CCA1(2)             --------->O2                                          ------>ZmHOX2a(2)             --------->TGA1a                                      <------ZmHOX2a(2)          ----------->TGA1                                        --------->CCA1(2)       <---------MYB46(3)                                        --------->ARR11(3)     <---------GLK1(2)                                           <---------ARR11(3)  <---------ANAC55(2)                                            <---------AGP1  --------->ANAC55(1)                                            --------->AGP1  --------->ANAC55(2)                                            <---------ARR14(2)  --------->ANAC58<---------ANAC46                               --------->ARR14(2)  --------->ANAC58<---------ANAC58      ----------->GT1        ----------->ARR10 <---------LBD16 <------NtERF2     <------MYB83        --------->MYB52(1)                        <--- ======================bZIP_DOF    <------MYB46(1)     <-----------GT1 --------->ARR14(2)   <-------- ------->HVH21 --------->ALFIN1  <---------MYB52(1) <---------KAN4(2)  <---------ARR14(2)  --------->AHL20(2) ======================bZIP_DOF <-------GAMYB --------->DAG2  <---------HSFB2a(2)  <---------ANAC58 -----DOF2----------->HVH21--------->MYB46(3)---------->DOF2  --------->HSFB2a(2)  <---------ANAC58   tgacacggattgttgacgtggcgttctaatccaccgttggtattgtataaagcgaataaacggtctagatctggatatgatgttcgcgtcccatttattc  7890400                                                                                                    -                                                                                               <-----                                                                 --------->TOE2(3)         <---------ARR11(3)       <----------DOF2                                     --------->YAB1             --------->AHL20(2)       --------------->AGL15                              <---------YAB1              <---------AHL20(2) --------->ARR14(2)                                    <---------AHL20(2)  <---------LBD16 <---------AHL20(1) <---------ARR14(2)                ------>NtERF2     <---------ICU4    <---------AHL20(2)  --------->ARR11(3) ------LBD16             <---------TOE2(3)    ----------->GT1 <-----------GT1 ------>NtERF2--------->AHL20(1) -AHL20(2)            <----------DOF2   <---------YAB1 <---------YAB1 --------->AHL20(2)  <---------AHL20(2)   gcggtttttctttgtttagatgggctttaggttttgaggcccattataggcttaaatattattataaccaaaattaatccggcccgatataaatattttt  7890500                                                                                                  <--                                                                                                  <--                        <---------TOE2(3)                                                       -----              --------->ATHB12                              ----------->GT1                    ------              -------->HAHB4                              ----------->GT1                      ------             --------->ICU4                          --------->At5g28300                       <-----      --------->YAB1   ---------->DOF2   --------->DAG2  --------->DAG2                 --------->CCA1(2)   <---------ICU4     <---------AHL20(2)---------->DOF2 ---------->DOF2      <------ZmHOX2a(1) <-----  --------->ICU4  --------->ATHB12 ----------->GT1  ------->GAMYB---------->DOF2     <---------ZAT6 -------->ANAC46<---------WOX13(1) --------->YAB1   ----------->GT1        <---------TOE2(3)  ------- ------GT1   <---------YAB1 ---------->DOF2      --------->MYB52(1)--------->DAG2 --------->CCA1(2) -   ccacataattagaaaatgattgatttaaagtaaagaatagtaaaaagttgataacggtaaaagtgaaaaaaggctataaggaagatagagataggcatgt  7890600                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                 ----      <---------ZAT14                                                                            ----      --------->ZAT14                                                                           -----     <---------ANAC46                                                                           <----   <---------ANAC46                                                                           <------   <---------ANAC58                                                                           -------   <---------ANAC58                                                                          --------  --------->ALFIN1                                                                         --------->DEAR3(1)  <---------AtMYB61                                                                        --------->AtMYB61 -------ANAC58                                                                             <xxxxxxxxx -------ANAC58                                                                             <---------ALFIN1 ---->ALFIN1                                                                              --------->MYB46(3) ->MYC3                                                                                  xxxxxxxxxxxx ->MYC2                                            <------MYB46(1)                      --------->AtMYB61 --MYC2                 <----------DOF2            <------MYB83                         <---------ALFIN1 --MYC3           --------->At4g35610        <---------ANAC46                           --------->DEAR3(1) -->ALFIN1   ----------->GT1       <----------DOF2 ----------->GT1  --------->ZAT14    --------->MYB46(3) -------->ALFIN1  <---------At4g35610     --------->ALFIN1    --------->ANAC46        ------>NtERF2--   gggtgtggtgcagagaggtgagaagacttttgaagggttttagggtgatgggaaggtgaaatataagcagttctctcgcttactgtgccaccaccaccac  7890700  Previous    Next  AGI:  At5g23420.1    Description:  HMGB6 (High mobility group B 6); transcription factor. similar to high mobility group (HMG1/2) family protein [Arabidopsis thaliana] (TAIR:AT5G23405.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61363.1); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 7888516    to: 7890183    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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