Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->YAB1                ------>ZmHOX2a(2)               --------->At4g35610               <------ZmHOX2a(2)              <---------ARR11(3)              <---------ARR14(2)                                                  <---------LBD16              --------->ARR14(2)                                                  --------->At4g35610              --------->ARR11(3)                                        ------->TEIL              <---------AGP1                                          --------->ZAT18        --------              --------->GLK1(2)                                       <---------ZAT14        --------             <------ZmHOX2a(1)                   --------->AHL20(2)   --------->ZAT14      --------->MYB52(1)           <---------TOE1(2)                     --------->YAB1       <---------ZAT18   <---------ATERF1(1)         --------->TOE1(2)        <---------HSFB2a(2)    <------ZmHOX2a(1)<----------DOF2--------->ATERF1(1) ---->YAB1 <---------TOE2(2)   ------->TEIL     <---------ATHB12    <---------------AtSPL8-----------   gcaagtagagacctaggatctgaatcatatatgaatctcgaaactgttcaataatatgaggattagagagagtgtactttgaacagcgggagacgacgga  7874100                                                          --------->GLK1(1)                               <---------HSFB2a(2)        --------->At4g35610                               <---------LBD16         <---------HSFC1(2)                 <---------LBD16--------->LBD16        --------->HSFC1(2)                 --------->At4g35610                  --------->ANAC58              --------->ZAT2   --------->HSFB2a(2)    --------->ANAC58                     <---------HSFB2a(2)  <---------ANAC58            <---------LBD16   <---------ANAC46                           --------->HSFB2a(2)  <---------ANAC58 --------->LBD16             <------NtERF2                              <---------LBD16  <---------ANAC46<---------ANAC46             --------->ATERF1(1)             --------->ATHB12   <-- ->ANAC58     <---------At4g35610            ----------->HVH21                <---------YAB1     ---- ->ANAC58     <---------ZAT2  <---------ANAC46------>NtERF2                 <------ZmHOX2a(1)    <--- >HVH21       --------->At4g35610            <---------DEAR3(1)<-----------HVH21     <----------DOF2   attggcgagaagagagagctgcggaataggtttcggggaagcgataggcgacggagaagcatctccatcacgaccagaggatgatttctttctctggaat  7874200                                                                      --------->DEAR3(1)                                                                   --------->DEAR3(1)                                                                   <---------ALFIN1                                                                   --------->AtMYB61                                                                  <---------MYB55(2)                                                                  <---------ABI4(2)                                                                  --------->MYB46(3)                                                                 ------>NtERF2                                                                --------->DEAR3(1)                                                                <---------ALFIN1                                                               <------NtERF2                                                               --------->ATERF1(1)                                                               --------->ERF1                                                              ------>NtERF2                                                              --------->ABI4(1)                                                              <---------ATERF1(1)                                                             --------->ATERF1(2)                                                             --------->ANAC46                                                             --------->RAP2.6(2)                                                             --------->DEAR3(1)                                                             <---------ATERF1(2)                                                             --------->RRTF1(2)                                                             --------->RAP2.3(2)                                                             --------->ANAC58                                                             --------->ANAC58                                                             --------->RRTF1(3)                                                             --------->RAP2.3(3)                                                             --------->DREB2C(2)                                                            --------->RAP2.3(1)                                                            --------->ATERF1(1)                                                            --------->DEAR4(2)                                                            --------->RRTF1(1)                                                            --------->RAP2.6(1)                                                            --------->ERF1                                                            --------->ORA47(2)                                                           --------->ABI4(1)                                                           <---------ATERF1(1)                                                           ------>NtERF2           <---------GLK1(1)                              --------->DEAR3(1)          --------->ARR11(3)                              <---------ALFIN1          <---------ARR11(3)                             --------->DEAR3(2)                         -      ---------->DOF2                                    --------->DEAR4(2)                        <- -------TOE2(3)     <---------ANAC58                     --------->MYB46(3)                        -- ----->MYB52(1)     <---------ANAC58                   <---------ALFIN1                <---------GLK1(1) --------GT1        <---------ANAC46              <----------DOF2<---------ATERF1(1)   --------->GLK1(1)   aacgatttcaaagaactctgatgcgtcttcatgaaattctccagcattccaactttcgcaccgccgccaccaccgtcttcttccatcggaaatcaccaca  7874300                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                           --------->YAB1                               <---------GLK1(2)                <---------GLK1(2)                        --------->GLK1(2)                  ---------            <------ZmHOX2a(2)                           <---------GLK1(2)     <----------DOF2   --------->YAB1    <------MYB46(1)       <----------DOF2            --------->LBD16       --------- -------->WOX13(1)   <------MYB83         <---------ANAC58       <----------DOF2      ------>ZmHOX2a(1) --------AHL20(2)   --------->MYB59       <---------ANAC58   <----------DOF2 <---------ANAC58   <---- ------->AHL20(2)--------->GLK1(2)--------->TOE2(3)    <---------At4g35610   <---------ANAC58  <-----   attaatcagattagatcagaatttggtaatcgtaaacctcgattgcttctccgattcagattcctttctttcccgatttgctttcttcctgtgcaagctt  7874400                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <---------GLK1(1)                                                --------->GLK1(1)                                                <------ZmHOX2a(2)             <---------ANAC55(2)               --------->ARR11(3)             --------->ANAC46          --------->ZAT14         --------->ANAC58             --------->ANAC58          <---------ZAT14        <---------ZAT18            <---------ANAC46            <---------ZAT18      <---------ARR11(3)          <---------ALFIN1            <---------ANAC58         --------->TOE1(1)       --------->ARR11(3)         --------->ZAT14         <---------ICU4         --------->TOE2(1)      --------->CCA1(1)      <---------CCA1(2)            --------->ATHB12< >ANAC58------>ZmHOX2a(1)       --------->RVE1(1)------>ZmHOX2a(2)      <---------TOE1(2)<---------ANAC58 >ANAC58--------->HSFB2a(2)   --------->YAB1   <---------ARR11(3) <----------DOF2   --------->ATHB51- -------HVH21--------->ANAC58<---------YAB1   <---------GLK1(1)--------->ANAC58    <---------YAB1   - -----DOF2  --------->ZAT18--------->YAB1     --------->GLK1(1)--------->ANAC46    --------->ICU4  --   tcacagactcctagtacgcaaactatcaactataatatctgttcagagagatctctcttatctgcacgctttcgcagttttcttcattattgagtgagaa  7874500                                    --------->AHL20(2)               <---------YAB1       <---------AHL20(2)               --------->AHL20(2)  <---------YAB1               <---------AHL20(2)<--------HAHB4              --------->AHL20(2) <---------ICU4                            <------------CBF        *TSS  <---------AHL20(2) --------->ATHB51                       ------------>CBF ---------AHL20(2)              --------->ICU4       --------->YAB1   --------->At4g35610   ------>MYB46(1) -------->AHL20(1)              <---------YAB1 --------->HSFB2a(2)<-----------GT1           ------>MYB83 -------->AHL20(2)   <---------TOE2(3)  <---------AHL20(2)       ---------->DOF2          <---------MYB59 ------->AHL20(2)   --------->MYB52(1)  --------->AHL20(2)      --------->AHL20(2)  <---------YAB1  -   aattaattgtttcgattttaattaacgaatagccattattaattaatgtctcgaatcaaaaccgaattaaaccgctcaattgttttatgaaaccgaacca  7874600                                       <---------YAB1                         <------MYB83<---------ICU4                         <------MYB46(1)                        <---------AtMYB61                                           <-----------ARR10              --------->TOE2(3)   ------>MYB83                            <---------MYB52(2)       <-              --------->TOE1(3)   ------>MYB46(1)                    --------->ANAC58       <--------   ------>MYB83        <---------MYB55(1)        --------->DAG2      --------->ANAC46       <--------   ------>MYB46(1)    <---------MYB52(1)<-----------GT1   --------->AHL20(2)        <---------ARR11(3) <---------MYB59  <---------At5g28300--------->YAB1       <---------AHL20(2)        --------->ARR11(3) -------->ANAC46 <-----------GT1<---------MYB59 ---------->DOF2      --------->ANAC58     <---------At4g35610   aaacccaactctgtaacattaaccgtttggtttaccaaattatcacagcataaagttagtttaaatggtgcaagcaaataaccaaaaatctcagcttttt  7874700                                         <---------YAB1                                       --------->YAB1                                      <---------ATHB12                                   --------->AtMYB61                               --------->ANAC58                               --------->ANAC58                               --------->ANAC46                             --------->ANAC46   --------->AHL20(2)       <---------REM1(2)   <---------AHL20(2)   <---------ARR11(3)<---------ICU4                 ---------->DOF2 --------ZAT6       --------->YAB1--------->MYB46(3)           <-----------GT1  <---------ANAC46   -- -DAG2---------->DOF2   --------->ARR11(3)--------->YAB1    <----------DOF2   --------->ZAT14    ---- --DOF2   ---------->DOF2 ------>ZmHOX2a(2)   <---------ARR11(3)     --------->TOE2(3)    ---------->DOF2   agtattaaaaaagaaagaacaatgttgatctacacgaccactgatcatggtcttctactcttcttttacattcttaaaagtgctgtctagagaaaagaat  7874800                                                                                <----------DOF2                                                                             <---------ARR14(2)                                                                             --------->ARR14(2)                                     <---------MYB46(3)                    <---------MYB46(3)                       --------->At4g35610                                <---------ANAC46                    <---------At4g35610                                   <---------ANAC58     <------ZmHOX2a(1) <---------At4g35610                                --------->ALFIN1          - -------->DOF2     <-----------RAV1(1)           ---------->DOF2          <---------ANAC58          < ----->YAB1    <---------GLK1(2)  <-----------RAV1(1)      <---------GLK1(1)<------NtERF2     <------ZmHOX2a(1)   caaaagaggagagactagcttctgatgctgactccattgttgttgatattctaaagcttggaattgccactgcgaggcgggtctttggcccagagaggag  7874900                                   <----------DOF2                           <---------At4g35610                        --------->ATERF1(1)                ----------->RAV1(2)           <---------WOX13(1)                        <---------At4g35610                <---------ANAC46             --------->ARR14(2)                       <---------ATERF1(1)            <---------ANAC58                  <---------ARR14(2)                     <------ZmHOX2a(1)                <---------ANAC58                  <---------GLK1(2)          --------->ARR11(3)       <---------DAG2<----------DOF2                      --------->LBD16 -------->ICU4    <-----------RAV1(2)        <---------MYB52(1)                     <---------LBD16 ---------YAB1--------->AtLEC2    <------------------------ANAC81                 ------->TEIL   ggatgattctatggtcttgcacaggaggctgctcttcctttttctcggtttctttttcgtcccctgtaactgatttagagaatgcatccggattggcatt  7875000  Previous    Next  AGI:  At5g23390.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65973.1); contains InterPro domain Protein of unknown function DUF639 (InterPro:IPR006927) Range:  from: 7870516    to: 7874508    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g23395.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK92917.1); contains InterPro domain CHCH (InterPro:IPR010625) Range:  from: 7874675    to: 7876430    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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