Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ICU4                                                                                    <---------YAB1                                        <-----------GT1                           <---------DOF5.7(2)                                  <---------MYB52(1)                              --------->MYB52(1)                                 <-------GAMYB                         <---------------AGL15    -----                                <------MYB46(1)             --------->YAB1      <---------ARR11(3) --At4g35610                    <------MYB83            ---------->DOF2--------------->AGL15    <---- ->At4g35610                    ----------->GT1       --------->YAB1  ----------------->AGL3--------- --RAV1(2)                     --------->MYB59  --------->YAB1 <-----------GT1  --------->ARR11(3)   agtctcaagagtttcaactcttagggattgagttcggttaattcacacattgataatcaaaagaataacatttccatttcaagataacgattaacaaaga  7855800                                  --------->At5g28300                               --------->At4g35610                              --------->MYB52(2)                              <---------DOF5.7(2)                            --------->DOF5.7(2)                            <---------MYB52(1)                           --------->TOE1(3)                           --------->TOE2(3)                          --------->ANAC55(2)                          <---------ANAC58                                   <---------ZAT6    <----------DOF2       <---------ANAC55(2)            <---------AtMYB61   ----------->GT1       -- ---->ARR11(3)            <---------ANAC58      <---------YAB1   --------->ATHB12                  -- -----ARR11(3)            <---------YAB1  <---------CCA1(1)      --------->ATHB51                ---- ->DOF2              --------->WOX13(1)   <---------RVE1(1)     <---------YAB1       <---------YAB1--   tgttaactttgactccattttggcaattacgttagcggtaatggatatttatgaaagttttggtttattattgaaaatagtgttaatatgactgaaaatg  7855900                                                                                                   <-                                                                                                   <-                                        --------->DAG2                                  <----------DOF2                                       ---------->DOF2                              --------->WRKY12        --------->At5g28300        ----------->RAV1(1)                              --------->WRKY38(1)    <---------ALFIN1            --------->ANAC58         <---------AHL20(2)         --------->WRKY45 ------->ANAC58                 --------->ANAC58        --------->AHL20(2)         --------->DOF5.7(2) ------->ANAC58            <----------ID1  --------->ALFIN1                      <---------MYB46(3)<- ------>DOF2        --------->ALFIN1 --------->MYB46(3) <---------AHL20(2)  ---------->DOF2   <------ ------->ANAC46  --------->DAG2 --------->ANAC46  ----------->GT1        --------->TOE2(3)  <-------GAMYB   aaagccacacggtgatgagaaggtggaagaagacaagcaacaaaagtgggaagagtaattaaatgtctgtctctatctcaaagtcgttgactttcgttgt  7856000                    ------->GAMYB                    --------->DEAR3(1)                    --------->RAP2.6(2)                                                           ---                    --------->ANAC46                                                            <----                   --------->MYB46(3)                                                           -----                   --------->DEAR3(2)                --------->GLK1(1)                          <----                 ------>MYB83                        <---------CCA1(2)                      <-------- --------ANAC58  ------>MYB46(1)                 --------->ANAC58 ------>MYB46(1)           --------- --------ANAC46  --------->MYB52(1)       --------->YAB1     <-----------GT1    ------>ZmHOX2a(1) --- --------ANAC58<---------MYB59           <---------ATHB12 --------------->AtSPL8--------->LBD16 ----- ---MYB46(3)   --------->AtMYB61 --------->ZAT14 --------->ANAC58 ------>MYB83<---------LBD16  ------   tgagtgtctcttactgaccaaaccgccattagaagtgttctcaatgataagacgcatttctttgtaccaaatgtcaaatttcctgaattgcccatccacc  7856100                                                              <---------ANAC58                           <----------DOF2                    <---------ANAC58      <---------At4g35610                          ------>ZmHOX2a(2)                   <---------ANAC46   ---------->DOF2                         <------ZmHOX2a(2)                <----------DOF2      ------>ZmHOX2a(1)                        <---------ARR11(3)               <---------ANAC58      <---------YAB1 --->MYB83              <-----------ARR10           <---------REM1(1)         --------->TOE2(3) -----MYB55(2)          --------->GLK1(2)           <-----------RAV1(1)     <------ZmHOX2a(2) ---->DEAR3(1)          <---------ARR14(3)          --------->ALFIN1       <---------ARR14(2) -----MYB46(2)          --------->ARR14(3)       <-----------RAV1(1)       --------->ARR14(2) -MYB55(2)              --------->ARR11(3)    <---------ARR11(3)           <---------ARR11(3) >MYB46(3)              --------->ARR14(2)    --------->ARR14(2)         --------->ANAC58 --->MYB46(1)           <---------ARR14(2)    --------->ARR11(3)         --------->ANAC46 ---->MYB46(3)         <------ZmHOX2a(1)      <---------ARR14(2)     <---------ALFIN1 --->ANAC46        --------->ICU4        ------------>CBF<---------ANAC58--------->ANAC58   *TSS   gaacatggactcatttcagaaatgaggatctttgggtcattttctcaatatctggtgttgctttccttgtaccacacgatccttatagctcatcatctaa  7856200                     >>>>>>>>>TBF1                   ------------------------>ANAC81           --------->LBD16                                  <---------GLK1(2)           ------>NtERF2                                  --------->LBD16                    <-------          --------->ANAC58                               <---------HSFB2a(2)               <---------At4g35610          --------->ANAC46     ----------->GT1           --------->HSFB2a(2)       <---------ARR11(3)          --------->ANAC58    >>>>>>>>>TBF1       <-----------GT1                  --------->ARR11(3)     <---------AHL20(2)    >>>>>>>>>TBF1    <---------TOE1(3)               <---------ARR14(2)    --------->AHL20(2)  >>>>>>>>>TBF1       <---------TOE2(3)---------->DOF2--------->ARR14(2)   tggccatttaatccgccagagaagaagaagaagaagaaaatagattagggtttttcattccagaatagccctaatccaaattcgaaatctttcttctgat  7856300               <-----------HVH21              --------->bZIP60(1)              <---------bZIP60(1)            <---------ICU4                                                                     ------            --------->YAB1                            --------->At4g35610                      ------           <---------ATHB12                           --------->ZAT2                           <-----    <----------DOF2                             ----------->HVH21                            --------   ------>ZmHOX2a(2)            <---------TOE2(3)     <---------ZAT2                       --------->YAB1 <---------ARR11(3)<---------At4g35610      --------->MYB46(3)                          ---------->DOF2 --------->ARR11(3)--------->At4g35610    --------->MYB52(1)                         --------->YAB1 --YAB1    <------ZmHOX2a(2)   <---------DOF5.7(2)    <---------At4g35610         ----------->GT1<---   tttgatctttccgatcatgtcatcggtctgtgttaacgaagcattaaccgatgacgagctgagatgggtattgtcgagactagacagtgataaagataag  7856400                                                                    --------->ALFIN1                                                                   ------->MYC3                                                                   <-------PIF5                                                                   ------->MYC4                                                                   ------->MYC2                                                                   <-------MYC3                                              --------->MYB52(1)   ------->PIF4                                              ------>MYB83         ------->PIF5                                              -------->P           <-------MYC4                                              ------>MYB46(1)      <-------PIF4                                              ==============================MYC_MYB               <--                                             --------->MYB55(1)    <-------MYC2            ------>NtERF2                                            ----------->HVH21     <---------TGA1a         --------->DEAR3(1)                                            --------->DEAR3(1)    ===================================                                            <---------MYB46(2)    --------->TGA1a         --------->RAP2.3(2)          <---------AtMYB61                 --------->MYB46(3)    --------->ANAC55(2)    --------->ORA47(2)      <------MYB46(1)              --------->At4g35610            <---------ANAC55(2)    --------->RAP2.3(1)      <------MYB83                 --------->ZAT14               ------------>OsbHLH66  ------>NtERF2 --------->ALFIN1                  <---------ZAT14              <---------ALFIN1        --------->LBD16 --->ANAC58<------MYB83        --------->ARR14(2)           --------->At4g35610         <---------ATERF1(1) --->ANAC58<------MYB46(1)     <---------ARR14(2)--------->LBD16<------------OsbHLH66  <---------ALFIN1 ----TOE2(3)              <------NtERF2    --------->DEAR3(2)  <------NtERF2           --------->DEAR3(1) ->CCA1(2)--------->MYB59----------->GT1<---------ZAT14    --------->MYB52(1)         <---------LBD16 ---ZmHOX2a(1)          --------->ALFIN1--------->ZAT14--------->GLK1(2)   <---------ZAT18--------->RAP2.3(3)   gaagtgtttggtttggtctgcaagaggtggctaaatctgcagagtaccgaccggaagaagctagcggcacgtgctggtccacatatgctccgccgtctcg  7856500                                                               <------ZmHOX2a(1)                                                             --------->LBD16                                                            <-----------RAV1(2)         --------->ANAC46                                   <---------LBD16      <-------TEIL                                          <---------HSFB2a(2)  <---------TOE1(2)                                  ------>ZmHOX2a(1) --------DOF2                                        <----------DOF2                   <---------MYB52(1) ========bZIP_DOF                             --------->HSFB2a(2)       <---------GLK1(2)   cttctaggttcactcaaatcgtcgaattggatttgtctcagtcaatttctaggtccttttatccaggagttactgattctgacctcgctgttatctctga  7856600                                                                     ---------->DOF2                                                 <---------------AGL15          <---------DAG2                         <---------ICU4          <----------DOF2   ------->GAMYB<----------DOF2                         --------->YAB1          <---------DAG2 ----------->RAV1(1)                 <---------ARR11(3)              --------------->AGL15    --------->GLK1(1)  <-------                 --------->ARR11(3)    <---------TOE2(3)        --------->MYB52(1)    ---------->ID1                --------->GLK1(1)    ---------->DOF2    ----------->GT1   <---------GLK1(1) <--------   gggattcaagtttctcagagttcttaatcttcacaactgtaaaggtatctacttttttgggttaaacaacagaaagagttccctttttgttttttttcca  7856700  Previous    Next  AGI:  At5g23330.1    Description:  riboflavin biosynthesis protein-related. similar to riboflavin biosynthesis protein-related [Arabidopsis thaliana] (TAIR:AT5G08340.1); similar to hypothetical protein OsI_013448 [Oryza sativa (indica cultivar-group)] (GB:EAY92215.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72379.1); similar to riboflavin biosynthesis protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99395.1); contains InterPro domain FAD synthetase; (InterPro:IPR015864); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 7854132    to: 7855816    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g23340.1    Description:  protein binding. similar to F-box family protein (FBL4) [Arabidopsis thaliana] (TAIR:AT4G15475.1); similar to putative F-box and leucine-rich repeat protein [Jatropha curcas] (GB:ABI64127.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 7856192    to: 7858322    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version