Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <---------ZAT14                                                          --------->ANAC46                                                 ------>ZmHOX2a(2)    --------------->AtSPL8                                                 <---------MYB59    --------->AHL20(2)                                               --------->ARR11(3)   <---------AHL20(2)===============                                               <---------ARR11(3)--------->WOX13(1)   <------ZmHOX2a(2)                                              --------->YAB1--------->ZAT14----------------->AGL3    ---------->DOF2     ----------->GT1      <---------ATHB12--------->REM1(1)      <---------At4g35610 ---->AHL20(2)  <----------DOF2 --------->AHL20(2)   --------->ZAT6<---------ATHB12 --------->At4g35610   aattttcaaagtcaaacactttgctcttgtaaaatgaaatagcatcaatgatctaactctactacaccaattaatgtgccatattcagatcaaaacaaga  7850000                                                                            <-------TEIL                                                                        <---------AHL20(1)                                                                        --------->AHL20(1)                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                  <------ZmHOX2a(1)                                    <---------ATHB12                <---------TOE2(3)                                      --------->AHL20(2)                <---------TOE1(3)                                  <---------YAB1            --------->YAB1                                      --------->AHL20(2)            --------->TOE2(3)                                   <---------AHL20(2)         <---------CCA1(2)                                   <---------AHL20(2)        ------>ZmHOX2a(1)         <---------YAB1            <---------AHL20(2) ==============HOX2a_HOX2a--------->GLK1(2)                 --------->AHL20(2)   ---------->DOF2   gttgcaactccttatcttaaggaataagattccaatatgattcgaataaaccaaaaatgagattaatttatcaataaattcatcaaagctactcactctc  7850100                                                            <---------At4g35610                                                      <---------ANAC58                                                      <---------ANAC55(1)                                              ------------>AtMYB77                                        --------->DEAR3(2)  --------->At4g35610                                      --------->ARR14(2)  <--------P                                   --------->LBD16    <---------ANAC46                                  <-----------RAV1(2) <---------ANAC55(2)                     --------->ZAT14  <---------ARR14(2) <---------MYB52(1)                     <---------ZAT14 <------ZmHOX2a(1)<---------ANAC58       --------->ANAC46              <----------DOF2 --------->At4g35610  --------->ARR14(2)        --------->ANAC58             --------->HSFB2a(1)  <---------HSFB2a(2)<---------LBD16         --------->ANAC58             <---------HSFB2a(1)  <---------LBD16  <---------ARR14(2) <------ZmHOX2a(1)   ttggaaaaatgagggactttcggtgcagaagaagctccaggaaccgaagaacagttacgggtagctccaagaggattagacgaaacccttctgaacaaaa  7850200                             ------>NtERF2                            --------->DEAR3(1)                           --------->ATERF1(1)                          <---------ATERF1(1)                       <-----------HVH21                      <---------DEAR3(1)                      <---------TGA1a                      --------->bZIP60(1)                      <---------O2                      --------->TGA1a                      <---------bZIP60(1)                      --------->bZIP60(2)                      --------->O2                      <---------bZIP60(2)    <------MYB83                    ------>NtERF2            <---------ANAC55(2)                   --------->DEAR3(1)        --------->ANAC55(2)                   ----------->HVH21         <------MYB46(1)                  --------->SPL7            --------->MYB59                  <------NtERF2           <---------MYB52(1)  <<<<<<<<<<<<<<<<<LFY                  --------->ATERF1(1) ------>NtERF2      <---------AHL20(2)                      <---                 ------>NtERF2       --------->ANAC46--------->ATHB12                           <----                 <---------ATERF1(1) ------>NtERF2   ----------->GT1                            <----                ----------->HVH21    --------->LBD16--------->ICU4                              <----                --------->At1g77200<---------LBD16  <---------YAB1                           <-------                --------->DEAR3(1) --------->SPL7 <---------At4g35610                      <---------MYB46(3)               --------->DEAR3(2)  --------->RAP2.6(3)  --------->AHL20(2)                 --------->ATHB12   actctctcgcccatttcgccgacgacgtcgcagcccttccggccattaggtaagatgattaaatcgacagtggaatcaaacagagttcgaaaatggttgc  7850300                                                 <---------YAB1                                               --------->YAB1                                             ------->TEIL                                         <--                                            <---------CCA1(2)                   <-------GAMYB     ---                                     --------->ANAC58                          --------->MYB52(2) <--                                     --------->ANAC46                  <---------DAG2             ---                                   --------->MYB52(1)                  <----------DOF2  <-------GAMYB -------DOF2                      ----------->HVH21                 --------->ANAC46   <------MYB83 - -----ANAC58                    --------->At4g35610               <-----------GT1      <------MYB46(1) -----ANAC58                    <---------At4g35610              <---------ARR14(2)    ----------->GT1 -----ANAC46          <-----------GT1--------->ANAC58            --------->ARR14(2)   --------->MYB59 -P      --------->YAB1<-----------GT1  <---------ANAC46 ----------->GT1       <---------MYB46(3)<---   tttgaaatctataagaagagggttttagccttctagctcacggcttgaatcttgatagagagaaaaatatacgctttttgtttgttgttcggttacaaag  7850400         <---------ARR14(2)         --------->ARR14(2)                   <---------LBD16       *TSS                             <---------ARR11(3)                             <---------ARR11(3) <-----------HVH21                      --------->ARR11(3)                        --------->At5g28300 -------ARR11(3)                      <-------TEIL        --------->MYB52(1)     ----------->GT1 ------>ARR11(3)                     <--------P --------->LBD16    <---------TOE2(3)   --------->ARR11(3) -------ARR14(2)                  <---------TOE1(3)      <-----------GT1       --------->LBD16 ------>ARR14(2)                 <-----------RAV1(2)   <----------DOF2     --------->MYB52(1) ----->ZmHOX2a(2)         <---------ANAC58 <----------DOF2<---------At5g28300<---------LBD16 ---ZmHOX2a(1)            <---------ANAC58------>ZmHOX2a(2)    <----------DOF2<---------LBD16      <-   gatcgtcagagtatttgctaaaacccttgcttccttcaggttgatctttccggttcgatttaccggtttaatgtagttaaccggggtaaaatcttatatg  7850500                          *TSS                       --------->ANAC58                       --------->ANAC58                       <---------TOE2(3)                   --------->YAB1                 <---------WOX13(1)         --------->DAG2                           --------->At4g35610          ---------->DOF2<------ZmHOX2a(1) ---------->DOF2          --------->At4g35610 ----------GT1  <------------CBF <----------DOF2            --------->ZAT18   <----------DOF2     <--   ttaaccggtttgaaaagagattgataaggaaggccctttctctgaaaaagcgagaccaagagtgcgaagtagctctctgtctttcgaagcagaagtgaga  7850600                                          <---------bZIP60(1)                                          --------->bZIP60(1)                                          <----------ID1                                       ----------->HVH21                     <---------ARR14(2)                                  <-----------RAV1(1)                        --------->ARR14(2)  <---            --------->ALFIN1  <---------ANAC58                        --------->GLK1(2)         -----        <---------ZAT14       <---------ANAC58                       <---------GLK1(2)          -----       ----------->RAV1(1)  --------->ARR11(3)                       <---------ARR14(2)       <------ --------DOF2     <------ZmHOX2a(1)    ----------->TGA1              --------->ARR14(2)<---------GLK1(1)   ctttgacgacaacagtgggaggaactatgagttcttgtgttgtgacgacaagctgtttctatacaatttcagattctagtatacgtttgaaatcccccaa  7850700                              --------->AtLEC2                            <---------ANAC46                            <---------bZIP60(2)    <-----------HVH21                                -                       <---------ANAC58      --------->ARR14(2)                 ---------->DOF2     -  ------>ZmHOX2a(1)    <---------ANAC58      <---------ARR14(2)      <----------DOF2 <----------DOF2- ------ZAT2        <----------DOF2         <---------MYB46(3)      <---------------AGL15            - ---->ANAC58   <---------MYB52(1)         <---------AtMYB61        ================================== ---->ANAC58 --------->MYB52(2)         <-----------RAV1(1)        --------------->AGL15       <----- ---ALFIN1  <-------TEIL ----------->HVH21--------->ALFIN1  ------->TEIL---------->DOF2        <-----   gctcctcaatctggttcgtttctttgtgtgacatggaaattgctgtggttctgtttcacatgaatctatctcttttaagcactaaagctttcaaatttcg  7850800                --------->ZAT2                <---------ZAT2                --------->At4g35610                <---------At4g35610  ------>ZmHOX2a(1) --------->TOE2(3) --------------->AGL15 <---------------AGL15 ---------------->AGL3                         ----------->GT1 ---------------->AG                           <---------MYB46(3) ---------------->AGL2                        <---------AtMYB61 ---------------->AGL1                        --------->ALFIN1--------->At4g35610 =================MADS_MADS             <---------HSFB2a(2)   <---------At4g35610 ----ANAC58    ----------->RAV1(1) <---------TOE1(2)  <---------TOE1(3)                 ------>ZmHOX2a(1) ----ANAC58  --------->MYB46(3)  <---------MYB52(1)   <---------TOE2(3)     ---------->DOF2   tttccttatagagtaaccagcagagaagacgctctcttaggtctcgaggtggtttaaaggttgaagcttactacggtctaaagacacctccttatccact  7850900  Previous    Next  AGI:  At5g23300.1    Description:  PYRD (PYRIMIDINE D); dihydroorotate dehydrogenase. Identical to Dihydroorotate dehydrogenase, mitochondrial precursor (PYRD) [Arabidopsis Thaliana] (GB:P32746;GB:Q9FMX1); similar to dihydroorotate dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:BAB11988.1); similar to Os04g0676300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054255.1); contains InterPro domain Dihydroorotate dehydrogenase, class 2; (InterPro:IPR005719); contains InterPro domain Dihydroorotate dehydrogenase, core; (InterPro:IPR001295); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 7847590    to: 7850407    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g23310.1    Description:  FSD3 (FE SUPEROXIDE DISMUTASE 3); iron superoxide dismutase. similar to FSD2 (FE SUPEROXIDE DISMUTASE 2), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT5G51100.1); similar to iron-containing superoxide dismutase [Brassica napus] (GB:ABR24272.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) Range:  from: 7850526    to: 7852535    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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