Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                <----                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                             --------                                                                                             <-------                                                                                          --------->WOX13(1)               >>>>>>>>>>>>>>>>>LFY                                                      --------->AHL20(2)              --------->ANAC58  <-----------RAV1(1)               ------->TEIL           <---------AHL20(2)          --------->YAB1        <---------ANAC58                <---------ZAT18      <---------YAB1-- ---------ANAC55(2)             <---------ANAC58                <---------ZAT14      <---------AHL20(2) ---------GT1 --------->ANAC58<---------ANAC46                  --------->ZAT14      --------->AHL20(2) --DOF2  <---------YAB1    <----------DOF2            ---------->DOF2    --------->ARR11(3) <--------   ttacctatattttgataagccagtgtcttcttttgtgtggctatggaaaccttgtttaaagcacaatgcacttgagttcttggttatataattaatcatc  7838500    --------->ANAC55(2)    <---------ANAC55(2)  <-----------GT1 --------ICU4 -------HAHB4 -------YAB1 ------>ICU4 ----HAHB4                                                                                <----------DOF2 -----ICU4                                                                               <---------ANAC58 ---->YAB1                                                                               <---------ANAC58 --->ICU4              <------ZmHOX2a(2)                                                 <---------ANAC46 ----YAB1             --------->ARR11(3)                                              <---------MYB52(1) ->YAB1               <---------ARR11(3)                                            <-----------RAV1(1) --ICU4           ---------->DOF2                                                   <---------MYB46(3) ------->ATHB51 <---------MYB52(2)          <---------ALFIN1    <---------YAB1  --------->DAG2 -ATHB12  <-----------GT1         --------->ANAC55(2)  <---------HSFB2a(2)     ---------->DOF2<------   attattacatattttccaactaaagatcatctgtttatgtaatgaaacacccttgttctccaagttatgtttgtgaaaaaaaaaagctgttgctttgatg  7838600                     ----------->RAV1(2)          <---------ARR14(2)                                               --------->ANAC58          --------->ARR14(2)                             --------->TOE2(3) --------->ANAC58 ---------         --------->ATHB12          --------->ZAT18     <---------YAB1   --------->LBD16 --------->ARR14(2)        --------->ICU4    <---------ETT(2)   --------->ANAC58          --------->RAP2.6(2)<---------LBD16        ----------->ARR10 --------->ETT(2)   --------->ANAC58          --------->ANAC46 --------->GLK1(2)        <---------YAB1<---------LBD16      --------->CCA1(2)          <---------LBD16  --------->RVE1(1) ---TOE2(3)          <---------ANAC46    --------->CCA1(2)           --------->At4g35610<---------ARR14(2)   ttttgaagtgaagattggccattacctggagacagagtgcaagagataagcaaaactattcttagactattagccgcaagaaatacaaaaaatccggcaa  7838700                                                --------->GLK1(1)                                               --------->ARR14(2)                            --------->AHL20(2) <---------ARR14(2)                --------->TOE2(3)                           --------->AHL20(2)--------->LBD16                   <---------YAB1                       --------->AHL20(2)   <---------HSFB2a(2)       --------->LBD16                  --------->LBD16           --------->LBD16          --------->RAP2.6(2)        -----                 --------->RAP2.6(2)        --------->HSFB2a(2)   --------->ANAC58           --------                <---------LBD16            <---------LBD16        --------->ANAC46           <------- <---------ANAC46--------->ANAC46  --------->AHL20(2)             --------->ANAC58    <---------GLK1(2) >LBD16        --------->At4g35610--------->AHL20(2) <---------ANAC46--------->RAP2.3(2)     --------   atgtcttatagactattagccgcaaaaaaataaaaaataaaaaatcccggaaatgtcttatagattacaagccgcaaaactattcttagattattagctg  7838800                              <---------ANAC46                             <---------MYB46(3)                             <-----------RAV1(1)                  <----------DOF2                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               <---------ARR14(2)               --------->ARR14(2)                                                            <-------               <-----------ARR10               --------->ALFIN1  ---------->DOF2            <--------               --------->ARR14(3)  --------->ARR14(2)        --------->LBD16         --------->ANAC58               <---------ARR14(3)  <---------ARR14(2)       ----------->GT1          --------->ANAC58 ->NtERF2      <---------ARR11(3)  >>>>>>>>>GATA-4          --------->LBD16----------->TBP --------->ATHB12 ->At4g35610   --------->GLK1(2)   >>>>>>>>>GATA-1     <---------ICU4--------->ARR11(3)   --------->ICU4 --At4g35610   --------->ARR11(3)  >>>>>>>>>GATA-3  --------->YAB1--------->DAG2     --------->ANAC46 ->ZAT2       <------ZmHOX2a(1)    >>>>>>>>>GATA-2 <------ZmHOX2a(2) <---------ARR11(3)   <---------YAB1   ccaaaaaaaaacatgaggatctttgtaatgtctggtggattcagacagagtggatcataatcccgaaaaaagctcttataaaaaactaagccatgattga  7838900                                                                    --------->MYB52(1)                      <------ZmHOX2a(1)         ---------->DOF2   <---------MYB52(2)                      =====================HOX2a_HOX2a      --------->At4g35610         *TSS        --------->ZAT14      --------->ANAC58  <---------At4g35610         <---------ARR11(3)               --------->ANAC58--------->HSFB2a(2)                      --    ------------>CBF <---------ZAT14<------ZmHOX2a(2)     <---------HSFB2a(2)                   ----- --WOX13(1) <----------DOF2  --------->ANAC58 --------->ANAC58    --------->MYB46(3)      <<<<<<<<<TBF1 ----CBF<---------ATHB12     --------->ANAC58 --------->ANAC58 <----------ID1          <<<<<<<<<TBF1   aaacattccaataacttttacagaggactgcaagaacgatcaagaagcaagaaagacgtttcagaagaacaaacgtcttcttcttgttcttcttcttcct  7839000                                                                                                    -                                                                                                   <-                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                                <----                                                                 <---------ICU4              <-------                                                              <---------ICU4                 --------                                                              --------->YAB1                 <-------                                                           --------->YAB1                    --------                                                           ------->GAMYB--------->HSFB2a(2)  <-------                                                       --------->MYB46(3)                    <-------                           ----------->GT1       <---------ANAC46--------->YAB1              --------    <----------DOF2   <----------ID1           ------>ZmHOX2a(2)<---------YAB1      ---------->DOF2-- ---->ZmHOX2a(1)    <---------ICU4       <---------ANAC58 --------->MYB46(3)  ----------->RAV1(1)<--- ->ZmHOX2a(1)   <---------YAB1           <---------ANAC58-------->P     <---------HSFB2a(2) ---------   cctcttcttttttttgttttcattacgacgagaaaatttgagttcgtgatcgcttgaacaaccatcatcatcatctagagccccaaaaaagaagaagctg  7839100     <---------MYB52(1)    <-------GAMYB    <---------MYB52(1)   ----------->GT1  <---------DEAR3(1) -------->PCF5 --------SPL7 ------ANAC58 ------ANAC58 ---->At4g35610 -----LBD16 --ZAT2                                                                                       ------- ->At4g35610                                                                                 ------->GAMYB --At4g35610                                                                               <---------At5g28300 ->ZAT2                                                                                   <---------ARR14(2) --HSFB2a(1)                                                                              <---------- --HSFC1(2)                                                                               --------->ARR14(2) ->HSFC1(2)                            --------->ALFIN1                              <---------ANAC58 ---->NtERF2----------->GT1           <------ZmHOX2a(1)                              <---------ANAC58 ------ANAC46                        <---------ZAT2                    <------ZmHOX2a(1) ----------->HVH21 >GLK1(2)  <---------TOE2(3)       <-----------RAV1(2)    --------->ALFIN1           <---------ANAC46   cgggccggttattttggttaattagtctaaatccatggcaggaggggcatttatagacgagagtggccatggaggagactacgaaggtcgtgtaaccgcg  7839200                                                                                 --------->ANAC58                                                                                 ------>NtERF2                                                                                 --------->ANAC58                                     ----------------------->TaNAC69(2)          --------->ANAC46     <---------ICU4              <------MYB83<---------MYB46(3)  <---------TOE1(2)    <---------YAB1               <------MYB46(1)   <<<<<<<<<<<<<<<<<LFY    <---------ANAC58    --------->ICU4              <---------AtMYB61 --------->ANAC58         <---------ANAC58  --------->YAB1             <---------MYB46(3)   --------->ANAC58    --------->MYB52(2) -->LBD16            --------->At4g35610  <----------DOF2        <---------TOE2(2)    --------->ANAC58 -GT1--------->YAB1  <---------At4g35610------>ZmHOX2a(1)       <-----------RAV1(2)   --------->ANAC58   tttgtcatgataacctgcattgtagctgcaatgggtggtctcctctttggttacgacattggtatctcaggtttgtttcttgccagccaagtaaaccaaa  7839300                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                <---------YAB1                   <---                                         <---------AHL20(2)   <---------bZIP60(1)       <-----------ARR10                                 <------NtERF2                --------->GLK1(1)    --------->ANAC58<-                               <---------ANAC46            <---------ZAT6          --------->ANAC58<-                          <---------AtLEC2               ----------->GT1          <---------TOE2(3)<-                  <----------DOF2------>NtERF2          <------ZmHOX2a(1)        --------->MYB52(1)==                  --------------------->WRI1         <------ZmHOX2a(1)      =========================              <----------DOF2  <---------ANAC58   <---------LBD16           <----------DOF2     -----         <---------At4g35610   <---------ANAC58   <-----------RAV1(2)    <------ZmHOX2a(1)    -------   attcttctctctgcttctttctttgttttcatggcggacatattatatgttttcaggaggagtgatatcaatggaggactttctaacgaaattcttccct  7839400  Previous    Next  AGI:  At5g23260.1    Description:  TT16 (TRANSPARENT TESTA16); transcription factor. Identical to Protein TRANSPARENT TESTA 16 (TT16) [Arabidopsis Thaliana] (GB:Q8RYD9;GB:Q540P5;GB:Q9FMX4); similar to SEP4 (SEPALLATA4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G03710.1); similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to SEP4 (SEPALLATA4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G03710.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44406.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Trans Range:  from: 7836445    to: 7838508    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g23270.1    Description:  STP11 (SUGAR TRANSPORTER 11); carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter. Identical to Sugar transport protein 11 (STP11) [Arabidopsis Thaliana] (GB:Q9FMX3;GB:O81708); similar to monosaccharide transporter (STP9) [Arabidopsis thaliana] (TAIR:AT1G50310.1); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT3G19940.1); similar to monosaccharide transport protein 1 [Zea mays] (GB:NP_001105681.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Sugar transporter, conserv Range:  from: 7838909    to: 7841029    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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