Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  ---------->DOF2            --------->MYB59        <---------AHL20(2)       --------->AHL20(2)       <---------AHL20(2)                --------->HSFB2a(2)            --------->At4g35610      <---------YAB1        <---------At5g28300                   ---------->DOF2   <---------AHL20(2)      <-----------GT1               --------->TOE1(3)   <---------YAB1 --------->ANAC58       <---------HSFB2a(2)     --------->ANAC46   --------->ICU4 --------->ANAC58     <-----------GT1   --------->TOE2(3)  ---------->DOF2 ------->YAB1<---------ANAC55(2) <---------MYB59      <-----------GT1--------->At4g35610   ttgatattattaaataggtaaagccattttcactgcctaatttacagaagacaaaaaaaccttatacaagaagcagaagaaagagaaaatgaaattagaa  7836000                 --------->ANAC46                 --------->ANAC58                 --------->ANAC58                 --------->ANAC55(1)                 --------->bZIP60(2)                           --------->ARR14(2)               <---------ALFIN1                                --------->KAN4(2)     <---------ZAT2   <---------ALFIN1                         <---------ARR14(2)                   -     <---------At4g35610                                    --------->YAB1                     <-----     --------->At4g35610  --------->ANAC46        ----------->GT1   <-----------GT1    <----------DOF2     --------->ZAT2 ----------->RAV1(1)       ---------->DOF2 <----------TaMYB80      --------->TOE2(3)   aatggtgagctgaaacaacacgccacacacagaattatacagaaactagaaagtgtaattaagcatattcttacccattaatctctcacctttattgtgt  7836100                         ------>ZmHOX2a(2)                        --------->GLK1(1)                        <------ZmHOX2a(2)                       <---------ARR14(3)                       --------->AGP1 <---------At4g35610                       <---------GLK1(2)                       --------->ARR14(2)                       <---------ARR11(3)                       --------->ARR11(3)        <---------------AtSPL8     --------->TOE1(3) <---------ARR14(2)        --------->DAG2     --------->TOE2(3) --------->ARR14(3)        <---------------AtSPL3                       <------   -------->P    <---------ARR14(2)   --------->At4g35610   ---------->DOF2                  --------   ------>MYB46(1)  <---------HSFB2a(2)          --------------->AtSPL8                      <-------   ------>MYB83  --------->ARR14(2)   <---------ZAT2     ----------->TBP                    <-------- -------->MYB46(3)  --------->HSFB2a(2)         ---------->DOF2                 <---------CCA1(2) ------HVH21    <---------MYB52(1)    --------->ZAT2   <----------DOF2<----------DOF2     -----------   catccaacctcaatctccgtttccagatccccaagaacacagctcaacaaaaaagtactttaaaaagactctctttctccctctatctctctatatatat  7836200                                 <-----------GT1 --------->ZAT6        --------->ANAC58                              <-------TEIL                  <- ---AHL20(2)           <---------ALFIN1                             --------->CCA1(2)            ---- ->AHL20(1)            --------->ANAC58                     --------->ANAC46                     <--- --AHL20(1)<-----------HVH21<----------DOF2               --------->ANAC46                    ------- -AHL20(2)<----------DOF2   <---------DAG2              <-----------GT1                --------->TOE2(3) >TBP  <---------ARR11(3)<---------ALFIN1      ------>ZmHOX2a(1) <---------YAB1     <---------ARR11(3)   ttctcactagctctttcacacacacacacactttttctctctctatctcctctctaattcacacatcaagattcaagaatcaacaacatccttgaaatga  7836300                                                         <---------TOE2(3)       <---------AHL20(2)                          <---------AHL20(2)       --------->AHL20(2)                          --------->AHL20(2)   <---------YAB1                             <--------P <---------TOE1(3)             --------->ARR14(2) ----------->GT1                            <---------MYB46(3)              ------>ZmHOX2a(2) -----------CBF               --------->GLK1(2) ----------->GT1             ========================= --->TEIL                    --------->ARR14(2) --------->MYB52(2)          ========================= ------YAB1                  <---------ARR14(2) --------->MYB46(2)        --------->ARR11(3)       <- -->ICU4<-----------GT1      <---------GLK1(2)<---------MYB52(1)<----------DOF2  <----------DOF2   --   atattgtaattaactaattctagggttttcagattcttgttttttttggttagttaattagggtttcttttaagttgatctagctttcatatacacttga  7836400     <------ZmHOX2a(1)                                                                        -------  <------ZmHOX2a(1)<---------ATHB12                                                   <------NtERF2 ========HOX2a_HOX2a--------->YAB1                                      --------->CCA1(2)     ------- ===========HOX2a_HOX2a                                         ---------->DOF2     <---------DEAR3(1) ----------RAV1(2) --------------->AGL15--------->CCA1(2)   <---------ZAT6         --------->SPL7 ------->YAB1--------->PCF2 <------ZmHOX2a(1)            --------->CCA1(2)    --------->GLK1(2) -----   atcaggaggaagagggagccactcataagaggaagaagagagagatgggtagagggaagatagagataaagaagatagagaatcagacggcgaggcaagt  7836500                                                                                                -----                                                                                            <------NtERF2                                                                                            <--------                                                                                           ------>NtERF2                                                                                           --------->MYB52(1)                                          --------->At4g35610                             <---------ALFIN1                                      <-----------HVH21                                   --------->DEAR3(1)                           =================================================bZIP_DOF     <---------MYB55(2)               --------->ARR11(3)    --------->O2                                        --------->MYB46(3)    --------->HSFB2a(2)    ---------->DOF2<---------At4g35610      --------------------->WRI1 -------    <---------HSFB2a(2)    ====================bZIP_DOF           =================================== -->ANAC58     --------->ARR14(2)    <---------TGA1a              <---------TGA1a       <---------At4g35610 -->ANAC58     <---------ARR14(2)    <---------O2        ----------->HVH21              --------->At4g35610 ------>HVH21----------->ARR10       --------->TGA1a    <-----------HVH21              --------->ANAC46   gaccttctccaagagaagaactggtcttataaagaagactcgtgagctctctattctctgtgacgctcacatcggtctcatcgtcttctcagccaccgga  7836600                                                                     ------>ZmHOX2a(2)                                                                    <------ZmHOX2a(2)                                                                   <---------ARR11(3)                                                                   >>>>>>>>>GATA-3                                                                   --------->AGP1<-------MYC3             <---------At4g35610                                   --------->ARR11(3)      --------->LBD16                                              >>>>>>>>>GATA-4 <----------DOF2                                        <---------TOE2(3)        ------->MYC3 ----->DOF2  --------->At4g35610               <---------ANAC58    >>>>>>>>>GATA-2                  - -LBD16  --------->ARR14(2)                    <---------ANAC58    >>>>>>>>>GATA-1       <-----------GT1 -->LBD16<---------ARR14(2)            <<<<<<<<<TBF1    <---------TOE1(3)    <-------TEIL------->TEIL ======bZIP_DOF             ----------->GT1 <----------DOF2       --------->GLK1(1)  ------->TEIL   <   aagctttccgagttctgctccgaacagaacaggttaacttcttcttctttcttgaattagggtttcagagatctatacatacatgtgtatgtatccatct  7836700                                                        --------->TOE2(3)                 <----------DOF2                                                       <---------ICU4                    <---------MYB52(1)              --------->At4g35610                      <--------HAHB4             <---------YAB1       <------ZmHOX2a(1)         <---------ANAC58      --------->ATHB12           --------->ICU4     <---------TOE2(3)           <---------ANAC58     --------->ICU4          <-----------HVH21 -------->AHL20(2)  --------->CCA1(2)                 <---------YAB1       --------->At4g35610 ---------AHL20(2) <---------ARR11(3)               --------->YAB1       <-----------RAV1(2)     <---   aattaatgaggaaatgagctagatatatgactcgtgcttgagaacagacagttttcatcattagtttctgaagtagcaggtgtcatgagtcgttttttgg  7836800                                      <---------YAB1                             <------------------------ANAC81                       <---------ARR11(3)                                                    --------                       --------->GLK1(2)                                                     <-------                       --------->ARR11(3)                                                    --------           <-----------RAV1(2)       <---------ARR11(3)                                 <---------AHL20(2)           <---------HSFB2a(2)       <---------AHL20(1)                           --------->YAB1           --------->HSFB2a(2)  ------>ZmHOX2a(2)                         <---------CCA1(2)  <------- <---------YAB1       <---------GLK1(2)                  <---------AHL20(2)      <---------YAB1 ------GLK1(2)      <---------TOE2(3)--------->AHL20(1)  --------->AHL20(2)------->TEIL--------->AHL20(2)   attttcatttggcccagaagttaagaatctttgatccaatatttttgttcttgcagtatttaatttgtattttcatgtatcttatcatatttaatacgta  7836900  Previous    Next  AGI:  At5g23260.1    Description:  TT16 (TRANSPARENT TESTA16); transcription factor. Identical to Protein TRANSPARENT TESTA 16 (TT16) [Arabidopsis Thaliana] (GB:Q8RYD9;GB:Q540P5;GB:Q9FMX4); similar to SEP4 (SEPALLATA4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G03710.1); similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to SEP4 (SEPALLATA4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G03710.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44406.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Trans Range:  from: 7836445    to: 7838508    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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