Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------AHL20(2)                      <---------AHL20(2)                     --------->AHL20(1)                     --------->ARR11(3)                     <---------AHL20(2)                     <---------ARR11(3)                     <---------AHL20(1) -------GT1          --------->AHL20(2)                                                           --- -AHL20(2)   ----------->GT1 <-----------GT1                                                  ------- >AHL20(2)  --------------->AtSPL8                              <---------ARR14(2)         <--------- -AHL20(1)  <---------------AtSPL8     --------->ZAT6           --------->ARR14(2)         ----------   tctatacatcttaaatagtacaatatattttttacttacaaacactatttctatttttaaaattcaaatccgattttaaaaattcaaactattctgtatg  7830000                                                            --------->CCA1(2) -------->GT1                                              --------->ARR11(3)                       < >TEIL     <---------AHL20(2)                              <---------ARR11(3)     ----------->GT1   < ------AGL15                                           ---------->DOF2       <---------AHL20(2)   --- ----->AGL15    <-----------GT1                 <---------AHL20(2)           --------->AHL20(2)------   tagaaaaaaacatatatttttctctactaaatttcagaattgaaatctattttttggaaaagatatatagcaaacatatataaatggataaaaactaaaa  7830100                                                    ------>MYB83     ----------->GT1                <---------YAB1  -------->P   <--------P                   --------->TOE2(3)   ------>MYB46(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------TOE2(3)             --------->ICU4<----------DOF2           --------->TOE2(3) ---------TOE1(3)           <---------WRKY38(1)    <---------ALFIN1   --------->YAB1               -- ------->DOF2 <---------At4g35610  --------->AHL20(2)              <----------DOF2 <---------AHL20(2) --->YAB1     --------->At4g35610  <---------AHL20(2)           <-----------GT1--------------->AGL15   taaaggttagtaaatcatctcacctatgagtcaacattaaaattgtcttttccctacccttacatgttactttcttaatttctatatatatgatgctata  7830200                                                      --------->ZAT18                                                      <---------ZAT14                                                      --------->ZAT14                                                    <---------ZAT18                                                   <---------ANAC46                                                   <---------ANAC58                                                 <---------ANAC46                                            --------->YAB1                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    <-----------GT1<---------ANAC58                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               ---------->DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------YAB1   <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->ANAC58            <---------YAB1     <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC58      <---------YAB1  <---------ICU4     <---------STY1(2)--------->ANAC46<---------ZAT18    ---------->DOF2 ------->TOE2(3)     --------->STY1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----------->GT1   ttcttaattacattatcaaaagtagctagttttgcaattcaccctataattttgtgtgcacaagaaaaaaaaaaaaaaagagtataattttgtttggact  7830300                               ---------->DOF2                           --------->AHL20(1)                           <---------AHL20(1)                           <---------AHL20(2)                           --------->AHL20(2)                          --------->AHL20(2)                      <-------TEIL                                                <----------DOF2                      ------>ZmHOX2a(2)                                       <-----------GT1                     <------ZmHOX2a(2)           <---------MYB52(1)  --------->At4g35610                    ------->TEIL                --------->TOE2(3)   ------>ZmHOX2a(2)          <-----------------AGL3               ----------->GT1    --------->ARR11(3) <---------ATHB12   --------->ARR14(2)      <----------DOF2       <---------ARR11(3)         -------- ------------>CBF   <---------ARR14(2) ---------->DOF2         *TSS<------ZmHOX2a(2)         <-------   caaatcaatgggccttaatatggatccattaaattaagcccaaaagctttcgttaattcttcaacgaagatcgctgaaaatttcctttcccatttcgctg  7830400                                                                                        <---------ARR11(3)                                                                                    --------->HSFB2a(2)                                                                                    <---------LBD16                                                                                    -----------------                                                                           --------->ANAC55(2)                                                                           --------->ANAC58                                                                           <---------O2 <---------ARR14(2)                                                                           ==========================                                                                           --------->O2 <-----------ARR10                                                                           --------->TGA1a                                                                           <---------TGA1a------>ZmHOX2a(2)                                                                           <---------ANAC55(2)      <                                                                       <-----------HVH21--------->ARR11(3)                                                                      --------->ANAC58  --------->ARR14(2)                                                                      <------MYB83  <---------HSFB2a(2)      --------------->AtSPL3<------MYB83      --------->ATHB12        --------->ANAC58  <---------AGP1      --------------->AtSPL8<------MYB46(1)  <------ZmHOX2a(2)        <------MYB46(1)  <---------CCA1(2)     <-------TEIL          <---------TOE2(2) <---------YAB1           <---------At4g35610<------ZmHOX2a(2) <---------------AtSPL8    <---------TOE1(2)<---------ARR11(3)        --------->At4g35610<---------GLK1(1) ->At4g35610         <---------GLK1(2)      --------->ARR11(3)        --------->bZIP60(2)--------->GLK1(1) --At4g35610     <---------LBD16  <---------TOE2(3)   --------->MYB46(3)   --------->ANAC58    ------   aatagggttcagtacaaaattcggaatcgtaggtttaagaattttagatcattgaaacagccatgtctaggcaggtcacgagacttctcggatctcttcg  7830500              <------NtERF2              <---------ZAT14              <---------ZAT2              <---------At4g35610              --------->At4g35610           <------NtERF2           <---------ZAT2           --------->ZAT2           --------->ATERF1(1)           <-------GAMYB           --------->At4g35610          <---------MYB46(3)          <---------DEAR3(2)          <---------ERF1          <---------RAP2.3(1)          <---------RRTF1(1)          <---------ATERF1(1)          <---------RAP2.6(1)         <---------ANAC46         <---------RAP2.3(3)         <---------ATERF1(2)         <---------DEAR3(1)         <---------RAP2.6(2)         <---------RAP2.3(2)         --------->ATERF1(2)        <---------DREB2C(1)        --------->ATERF1(1)        --------->RAP2.3(1)        --------->DREB2C(1)        --------->DEAR4(2)        <---------At4g35610        <------NtERF2       <---------ATERF1(1)       <---------ERF1       <---------RAP2.6(1)       <---------DEAR4(2)       <---------RAP2.3(1)       ------>NtERF2                                                                           <-----       <---------ORA47(2)                                                                     ------>NtERF2       <---------RRTF1(1)                                                                     <------NtERF2      <---------ATERF1(2)                                                                     -------      <---------RAP2.3(3)                                                                    <-------      --------->ATERF1(2)                                                                    ------>NtERF2      <---------RRTF1(3)                                                                     <-------      <---------RRTF1(2)                                                                    <--------      <---------RAP2.3(2)                                                                   <--------      --------->DEAR3(1)                                                                   <---------LBD16      <---------DEAR3(1)                                                                <---------ZAT2     --------->ATERF1(1)                                                                ----------->RAV1(2)     <---------ABI4(1)             <---------At4g35610                                 ------>NtERF2    <---------ATERF1(1)        ----------------------->TaNAC69(2)                      <---------ATERF1(1)    <---------RAP2.3(1)        --------->ARR11(3)                                     --------->DEAR3(1)    --------->LBD16    <------NtERF2                                                  <---------ALFIN1    ------>NtERF2--------->At4g35610                                                ------>NtERF2   <---------RAP2.3(2) --------->At4g35610                                         --------->DEAR3(1)   <---------RAP2.6(2) <---------At4g35610                                         --------->ANAC46   <---------LBD16     <---------ZAT2                                            <---------ATERF1(1)  <---------LBD16<---------At4g35610                                             ------>ZmHOX2a(1)  = ---->WRI1------>NtERF2--------->ZAT2                                 <---------HSFB2a(2) <---------- ==================MYC_MYB ---------->DOF2     --------->ATHB12     <---------LBD16<---------ALFIN1 < ---------ARR14(2)  <------NtERF2  --------->At4g35610             ------>ZmHOX2a(1)<---------ATERF1(1) --->ANAC46<---------At4g35610 <---------ARR11(3)     --------->ZAT14 --------->HSFB2a(2) ------>ZmHOX2a(1)   ccattccggcggcggctgcagcggcagctcaaaggtctgctctctcacttcattggtacagtctcgctccttcgggacaactcctccgcctcctgcggcg  7830600                         --------->At4g35610                   -------->ABF1                   <-------MYC4                   <-------MYC3                   ------->MYC3                   ------->MYC4                   ------->MYC2                                        --------->ANAC46                   <-------MYC2                                        --------->ANAC58 <------NtERF2     <---------ETT(2)    <---------At4g35610           --------->HSFB2a(1)              --------->ANAC58     --------->ETT(2)<-----------HVH21          --------->MYB52(1)--------->ZAT14       --------->ANAC58 ----DEAR3(1)     --------->ANAC55(2)       ---------->DOF2       <---------ZAT14      ------>NtERF2 -->ATERF1(1)     =====================================bZIP_DOF --------->ANAC46   --------->ANAC46 --RRTF1(1)       --------->O2            --------->LBD16 ------>MYB83 --------->ANAC58----------->RAV1(1) --RAP2.3(1)      --------->TGA1a        --------->HSFB2a(2)  <---------ALFIN1     --------->ANAC58 -RAP2.3(2)       <---------ANAC55(2)    <---------HSFB2a(2)<---------ALFIN1       --------->ANAC55(1) -DEAR3(1)        <---------TGA1a       <---------LBD16<---------HSFB2a(1)         --------->ANAC55(2) ===========================bZIP_DOF   --------->MYB52(1) ------>MYB46(1)          <---------ANAC55(2) -RAV1(1)         <---------O2        <-----------GT1  --------->HSFC1(2)          --------->ANAC58 ----------DOF2   --------->ANAC46<---------ARR11(3)   <---------HSFC1(2)         --------->RAP2.6(3)   gtctttgtcgacaaaaatacacgtgtcatctgccaaggtattaccggaaagaacgggaccttccacactgaacaagccattgaatacggcaccaaaatgg  7830700                                                                                                   --                                                                         <---------ARR11(3)       <--                                                                         --------->ARR11(3)       ---                       <-------TEIL                                     <---------GLK1(1)         <--           --------->ARR14(2)                              --------->GLK1(2)               ----------           <---------ARR14(2)                             <---------ARR14(2)           --------->YAB1       <---------HSFB2a(2)                                <---------GLK1(2)           <------ZmHOX2a(2)       --------->HSFB2a(2)     ------->TEIL               --------->ARR14(2)          <---------YAB1   tattgtattcgagaattcacatagattcaaatgtacttcttggtgtttttgagcaattcagattctatgtatggagttcttaagtacgatcataagagcc  7830800              <---------At4g35610    <-----------GT1  <----------DOF2                                                                                   < ------->GLK1(2)        --------->ZAT18       <-----------RAV1(1)                             <------ -------GLK1(2)         <---------ZAT18      <---------TOE2(3)                       <---------ANAC58 ------>ARR14(2)        <---------ZAT14 --------->MYB52(2)                       ---------->DOF2----- -------ARR14(2)        --------->ZAT14<-------TEIL                           <----------DOF2 ------- >DOF2        <---------CCA1(2)     <---------MYB46(3)               <---------ANAC46<---------ANAC58   gattctttactatttcatctctcaagttcacttggaattggttcgtttatgttgatgaaatggtgtttgttttgtgtttgctttaaagcttgtgatgatc  7830900  Previous    Next  AGI:  At5g23250.1    Description:  succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative. Identical to Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q8LAD2;GB:O82661;GB:P53586;GB:Q9FMX5); similar to succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative [Arabidopsis thaliana] (TAIR:AT5G08300.1); similar to unknown [Populus trichocarpa] (GB:ABK95068.1); contains InterPro domain ATP-citrate lyase/succinyl-CoA ligase, active site; (InterPro:IPR017440); Range:  from: 7830363    to: 7832846    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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