Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->YAB1                                         ------->GAMYB ------>ANAC58                          <------------AtMYB77          --------->ZAT2 ------>ANAC58                    <-----------ARR10                   <---------At4g35610 -->YAB1                          --------->GLK1(2)                   --------->At4g35610 ----->AGL15                     <---------GLK1(2)<---------YAB1<---------AHL20(2)                 <- ------AGL15      <---------MYB52(2)  --------->MYB52(1)       --------->AHL20(2)                  <-   aagcaaaaacaaacacagcaaataacaaaaactcagaatctaactgtctagcatgattttgagtattaaatcagctccagtagagacattcacttcgatt  7748500                      <---------LBD16        ----------->GT1--------->LBD16       <---------TOE1(3)  <---------ARR14(2)       <---------TOE2(3)  --------->ARR14(2)         <---------At4g35610   <---------ANAC58   <---------ANAC55(2)            --------->At4g35610                     --------   <---------ANAC58   --------->ANAC55(2)   <---------At4g35610                        --------->TOE2(3) --------ANAC58       <---------ANAC46      <---------ZAT2                         <---------MYB52(1) --------ANAC58      <---------LBD16   <-----------GT1                  ---------->DOF2<---------MYB59   ttcttgcttaaggttaatttcattccgggatactcacaaattttcaagctgattaagctgaaacgggaatgcctcaaagttatcccttaccttactcgac  7748600                                                  ----------->GT1                                                --------->MYB52(1)                                             --------->YAB1                                   --------->ANAC58                                   --------->ANAC58                                   --------->ANAC46------->GAMYB           ---------->DOF2  <--------                         --------->TOE2(3) --------->ANAC58         <---------AtLEC2        ---------                        <---------ANAC55(2)--------->ANAC58        <-------TEIL        --------->HSFB2a(2) ->ANAC46  <---------At4g35610     <---------ANAC55(2)         <---------TOE1(2)       <---------HSFB2a(2)   ataaaacctattaagctctctacaatacgttagaatcacgaaaacaagcacaacgaaaaaactcccatgttcatggccaaagcgagtctctcgaagctca  7748700                                                                                             --------                                                                                             --------          --------->At4g35610                                      --------->ZAT2          <---------At4g35610          <---------At4g35610                                      <---------ZAT2          --------->At4g35610          ----------->RAV1(2)                                     --------->ANAC58       --------->HSFB2a(2)        --------->YAB1                  ---------->DOF2           --------->ANAC58       <---------HSFB2a(2)       <---------ATHB12               <------ZmHOX2a(2)           --------->ANAC46   <---------WOX13(1) -At4g35610                          <---------ARR11(3)     <---------ANAC58      <---------TOE2(3) >At4g35610       --------->AHL20(2) --------->ARR11(3)     <---------ANAC58      <---------YAB1   aattatctaatcatctgcaactaaatagacgaactagaagatcaaagaaaaactcacctcttgcttccaagcagggagagttctaagattgccagaagcc  7748800                                                                              ----------->RAV1(2)                                                                     <---------HSFB2a(1)                                                                --------->ANAC55(1)                                                                --------->ANAC46                     <---------ANAC58                           --------->ANAC58    >>>>>>>>>>>>>>>>>LFY                     <---------ANAC58                           --------->ANAC58----------->HVH21                   ------>NtERF2                         --------->AtLEC2     --------->At4g35610                   --------->LBD16                 <---------SPL7    --------->HSFB2a(1)          ---        <----------DOF2                           <---------ANAC58  --------->ARR11(3)            --- ->ANAC58        <---------LBD16          <----------DOF2--------->ANAC46  ------>ZmHOX2a(1)      <-- ->ANAC58    <<<<<<<<<TBF1       <<<<<<<<<TBF1    <---------ANAC58  <---------ARR11(3)           ----   ccagcgactgctttcttcttccggcttgcgatttcttcttcgcgctctattggcgttccatgaaacacgaaatcttcctcgtctgaccccattgtcttca  7748900                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                               <---------ARR14(2)                                          --------->ARR11(3)                               --------->ARR14(2)                                          <---------ARR11(3)                    --------->RAP2.6(2)                                                   --------->GLK1(1)                  --------->At4g35610                                                     --------->RVE1(1)             <------ZmHOX2a(1) <---------GLK1(2)                                          <---------GLK1(1) ------>DEAR3(1)  --------->ZAT2--------->GLK1(2)          >>>>>>>>>TBF1                 --------->ARR11(3) ------>AtMYB61   <---------At4g35610                   >>>>>>>>>TBF1         --------->ICU4 -------ALFIN1   ----------->RAV1(1)           --------->LBD16  --------->At4g35610      <---------ARR11(3) ----->MYB46(3)--------->At4g35610  *TSS      <---------HSFB2a(2)    --------->GLK1(2)<------ZmHOX2a(1)   ccaccgagaccgagaggagcagcagcaattcgagattctgaacgagtcccagagagaagaagaagaagcagaatcagagaattatggaggagatatctgg  7749000                                                                                   <-----------ARR10                                                                                --------->RAP2.3(3)                                                                               --------->ATERF1(1)                                                                               <------NtERF2                                                                               --------->ORA47(2)                                                                               --------->DEAR4(2)                                                                               --------->RAP2.3(1)                                                                              ------>NtERF2                                                                              <---------ATERF1(1)                                                                           --------->ANAC58                                                                           --------->ANAC46                                                               <---------TOE1(3)--------->DEAR3(1)                        <---------MYB52(1)                     <---------TOE2(3)--------->RAP2.3(2)                   ------>NtERF2                              <---------DOF5.7(2)------>NtERF2                   ---------->ID1                             ---------->DOF2--------->ANAC46                --------->RAP2.6(3)                     <------ZmHOX2a(1)  --------->ANAC58             <----------DOF2                          <---------TOE2(3) <---------REM1(2)         --------->GLK1(1)                        <----------DOF2   --------->ARR11(3)           ----   gcctggttcgggtctcttttcggcccattagttttgttttaaaatccaattgctataaggaagttaaagttatcttcacgcgccgtctctaagcgttgta  7749100                                                                                                 ----                                                                                                 >>>>                                                                                                 >>>>                                                                                                 >>>>                                                                                               ------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             --------                                <---------MYB52(1)                                         <---------                              <---------ANAC46                                             ----------                       <---------ANAC58                                                 <---------AHL20(2)                       <---------ANAC58                                                 <---------AHL20(1)              <XXXXXXXXXXXXXXXXXXXXMIR164A/B                                <---------ARR14(2)<------              --------->ANAC46<---------ANAC58                         ----------->GT1  --------->AHL20(1) ---------->DOF2   <----------DOF2                                   ----------->GT1   --------->AHL20(2) ------>DOF2<-----------GT1   <---------ANAC58              *TSS  <------ZmHOX2a(1)    --------->YAB1   aaagaaagtgtgattcacgcgctttgcttcttccgtttgccctaaacgactctgctagagaagacgaaggagagagaaaatccctccgattatattccgt  7749200                          ------>ZmHOX2a(2)                         <------ZmHOX2a(2)                         --------->GLK1(1)                        --------->ARR14(2)                        <-----------ARR10                        --------->AGP1                        --------->ARR11(3)                        <---------ARR14(2)                        <---------ARR11(3)                        <---------AGP1                    --------->ATERF1(1)                    <------NtERF2                   ----------->RAV1(1)                   ------>NtERF2                  --------->RAP2.3(3)                  --------->RAP2.3(2)                  --------->DEAR3(1)                 <------NtERF2                 --------->ERF1 ----->SPL7      --------->RAP2.6(1) >>>>>SPL1       --------->RAP2.3(1) >>>>>SPL4       --------->RRTF1(1)                        <---------ANAC58 >>>>>SPL5       --------->ATERF1(1)                       <---------ANAC58 --->LBD16      ------>NtERF2     ------>NtERF2            <---------ANAC46 ---ANAC55(2)   --------->LBD16 --------->LBD16           <-------TEIL       --------->At5g28300 ---ANAC46      <---------ATERF1(1)                    <------MYB46(1)     <---------ANAC46 ---ANAC58    <---------LBD16<---------At5g28300       <------MYB83       <---------At5g28300 ------->AtSPL3--------->LBD16 --------->DEAR3(1)  --------->ARR14(2)   <---------MYB52(1) --GT1<------ZmHOX2a(2)<---------CCA1(2)           <---------ARR14(2)   --------->ARR14(2)   <------- -------->SPL14--------->ANAC46--------->ANAC46 ----------------->AGL1  <---------ARR14(2)--------->ZAT6 ---ANAC58<---------GLK1(1)----------->HVH21 <----------DOF2    --------->WRKY38(1)     <---------ARR11(3)   acaatccgatcgatttcccggcgccagatctcaccgcgactcgtctactttccgatttggttcgtgttgactcagttacggtgagtcgattatctctatc  7749300                                                      --------->ANAC46                                                      --------->ANAC58                                              <---------ANAC46                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         --------->AGP1                                         <---------AGP1                                         <---------ARR14(3)               ------>ZmHOX2a(2)         <---------ARR11(3)              <------ZmHOX2a(2)          --------->ARR14(2)              --------->GLK1(1)          <---------ARR14(2)              <---------GLK1(1)          --------->ARR14(3)                                         <             <---------ARR14(2)          <-----------ARR10       ----------->RAV1(2)            -----             <-----------ARR10           --------->ARR11(3)    <-----------GT1                 <-----         <-----------GT1                <---------CCA1(2)   <----------DOF2                   -------        <-----------GT1--------->ATHB12----------->ARR10 ------->TEIL                         ------- --CCA1(2)   --------->ARR14(2) <----------DOF2       --------->ANAC58   <---------GLK1(1)    <------   ttctcgtttttttccgatctccccttgatttgctctttatgcagatcttcgtgtacaagcacctttaacctgatgaattctgtagattaaactatggatc  7749400  Previous    Next  AGI:  At5g23080.1    Description:  TGH (TOUGH); RNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO67984.1); similar to Os06g0489200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057672.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain Protein of unknown function DUF1604 (InterPro:IPR011666) Range:  from: 7742943    to: 7748936    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g23090.1    Description:  TATA-binding protein-associated phosphoprotein Dr1 protein, putative (DR1). Identical to Dr1 protein homolog (DR1) [Arabidopsis Thaliana] (GB:P49592); similar to TATA-binding protein-associated phosphoprotein Dr1 protein, putative [Arabidopsis thaliana] (TAIR:AT5G08190.1); similar to repressor protein [Glycine max] (GB:AAL73489.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 7749160    to: 7750391    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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