Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->GLK1(1)                                                 <---------GLK1(1)         --------->ZAT6                          --------->ARR14(2)    --------->ANAC55(2)                          <---------ARR14(2)    <---------ANAC55(2)            <----------DOF2    ----------->GT1             <---------ARR11(3)                                  <------ZmHOX2a(2)   <-------TEIL                 --------->ARR11(3)                       --------->ANAC46  --------->GLK1(2)   --------->YAB1          <---------MYB59          <-----------GT1 <---------GLK1(2)  --------->AHL20(2)<---------CCA1(2)<----------DOF2--------->ARR14(2)        -----   tgagattcgtaacacgattcaaaataatagctaagaccttttatcttaccgaattcccttttaaaactgcaatataccctacttggatcaccctaaacta  7717700                                           ----------->HVH21                                           ------->GAMYB                                          <------------AtMYB77                                          --------->MYB46(3)                                          <---------MYB52(2)                                         --------->At4g35610                          <---------AHL20(2)                  ----------->GT1        ------>MYB83                                 --------->AHL20(2)                 <---------YAB1  --------->YAB1                                      --------->AHL20(2)                 <---------TOE1(3)       ------>MYB46(1)                          --------->AHL20(2)                 <---------TOE2(3)      --------->MYB52(1)   --------->AHL20(1) --------->TOE2(3)          <-----------------AGL3 --------->AHL20(2)         --------->YAB1     <---------ICU4          --------->YAB1     --------->AHL20(2)           --------->AHL20(2)   --------->YAB1    ----         <---------YAB1    --------->TOE2(3)     <---------ATHB12             <---------ATHB12 <----- ----->DOF2   <---------AHL20(2) <---------AHL20(2)   ----------->GT1   --------->GLK1(2)     <------   aagtctaaactatcattttatggttataaacttaattaaaaccaactgacaatgaattgaaaaaataatgtgagattccaaacattatttaatttttggt  7717800                                                                                      <---------MYB52(1)                                                      <---------AHL20(2)             <-----------HVH21                                                     --------->AHL20(2)              <-----------TGA1                                                     <---------AHL20(2)      <---------ICU4                     <---------At5g28300            --------->AHL20(2)      <---------YAB1           --------->DAG2                     --------->ANAC58            --------->YAB1        <---- ------->GT1        <-----------GT1           --------->ANAC58       <---------ARR14(2)   <----------DOF2 --GAMYB ---------->DOF2------>NtERF2    <---------TOE2(3)           --------->ARR14(2)   <---------DAG2 ---MYB46(3)----------->GT1<----------DOF2  ---------->DOF2     <---------ANAC46    --------->ANAC46   tgtaaaatcccaaaaggtatatttaccgcctttaaaaaaaactaatgaaagcaatttaaattgtttctgtgtattctcatcatttcccgtcacttttgta  7717900                                                                                                   <-                                                                                                   --                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                         <---------ARR11(3)                                                                                         --------->ARR11(3)                                                     ---------->DOF2          ---------->DOF2 <------                  <------ZmHOX2a(2)           <---------AHL20(2)   --------->YAB1       <------ZmHOX2a(1)        --------->TOE2(3)    <---------ANAC46 <---------AHL20(1)   --------->TOE1(3)  <---------TOE2(3)        --------->TOE1(3)    ----------->GT1  --------->AHL20(2)   --------->TOE2(3)  <---------TOE1(3)      <---------TOE1(2)      <---------ANAC55(2)   <---------AHL20(2)    --------->TOE2(3)  <-------- -------GT1       <---------YAB1          <---------AHL20(2)    <-----------GT1--------->DAG2--------   acaattccaacgttagaacgatcattcactcgcgtaaattgtttttattttattttaaagcgttttaaaccataacataaaaaagtttaaggatattata  7718000                        <------MYB46(1)                        <------MYB83                       --------->MYB59 --------AHL20(2) --------->ARR11(3)                                        <---------ARR11(3) ------->AHL20(2) <---------ARR11(3)                                        --------->ARR11(3)      < ----YAB1        --------->YAB1                                             <---------GLK1(2)      -- -->AHL20(2)   <---------TOE2(3)                                  ----------->GT1         ----------- ---AHL20(1) <---------AHL20(2)                                <------------CBF           --------->AHL20(2) ---AHL20(2) --------->AHL20(2)                              <---------AHL20(2)           <---------AHL20(2) -YAB1--------->YAB1   <---------TOE2(3)----------->GT1     --------->AHL20(2) <-----------GT1     <- ->YAB1     --------->AHL20(2)    --------->ALFIN1  ----------->GT1     ---------->DOF2 ----------->TBP   attttttatcaaaaattaatgatattaggttatcaagtggtcgagtaaatcatctggttatataaaattggagaaaaagattttctacctatataaatat  7718100                         --------->ATHB12                      --------->bZIP60(2)                      --------->ANAC46             --------->AtLEC2 --------->ARR11(3) <---------ALFIN1 ---------GLK1(1)--------->ANAC58                                                        <----------DOF2 ------->ARR11(3)--------->ANAC46                       ------>ZmHOX2a(1)              <---------TOE1(2) >TBP--------->At4g35610*TSS                           --------->ANAC46     <----------DOF2       --- --------ARR11(3)--------->ANAC58           <---------ALFIN1 --------->AHL20(2)       ------>ZmHOX2a(1)   agatatcatctgtacatgcactccacctcattgcaaaacaatttccccactatctatcctccataatatagtattcttcttttctctcctactttctcta  7718200                                                                                           <---------                                                                                      --------->GLK1(1)                                                                                      <------ZmHOX2a(2)                                                                                      --------->HSFB2a(1)                                                                                     <---------ARR14(2)                                                                                     <---------ARR11(1)                                                                                     --------->ARR11(3)                                                                                     <-----------ARR10                                                                                     <---------ARR11(3)                                                                                     --------->ARR14(2)           <---------MYB52(1)                --------->ZAT2                   --------->MYB46(3)      <---------ANAC58                       --------->At4g35610    --------->WRKY18(1)------>ZmHOX2a(2)      <---------ANAC58                 --------->MYB46(3)       <---------LBD16 --------->MYB52(1) <---------ICU4                   --------->YAB1<-----------HVH21  <-----------HVH21<---------ARR14(1) ------>YAB1                     <---------YAB1<-----------RAV1(1)--------->LBD16   <---------CCA1(2)   tagtaatggcttcgttacttctcacatcgtcgagtatgataaccactagctgtcgctccatggttctccggtcagggttacccatcggatcttcttttcc  7718300                                                                    --------->DAG2                     <----------ID1                                --------->DAG2                     --------->ANAC58                   <----------CDC5                     --------->ANAC46                  --------->At4g35610                     --------->ANAC58                  <---------At4g35610                    --------->SPL7   <---------MYB52(1)----------->RAV1(2)              ------------------>SPL14        <-----------RAV1(1) ---------->DOF2<---------ZAT6     -        ----------->HVH21       --------->GLK1(2)      --------->LBD16   <------NtERF2              - -DOF2----------->RAV1(2)     ------>NtERF2   =====================RAV --------->ALFIN1    ------>ZmHOX2a(2)   ctctcttcgcctgacccgtccatacgacaaggcgactctgttcgtctcatgttgctccgctgagtccaaaaaggtggcaactagtgctactgatctcaaa  7718400                                                                                     --------->At5g28300                                                                                ----------->HVH21                                                                                ----------->TGA1                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                              <---------ANAC46                                                                          <---------HSFC1(2)                                                                      --------->ANAC58                                                <---------ARR11(3)    --------->ANAC46                        --------->KAN4(2)     --------->ANAC58        ----------->HVH21       --------->MYB52(1)    --------->LBD16  --------->ANAC58        <---------O2 <---------ANAC46  --------->YAB1      <-------TEIL        --------->ANAC46            --------->ANAC58             -- <---------ATHB12 <------NtERF2    <---------HSFC1(2)    <---------ANAC46 --------->HSFB2a(1)     --- <---------YAB1  <------NtERF2     --------->HSFC1(2)    <---------ANAC58 --------->HSFC1(2)     <--- ----->MYB46(1)  --------->LBD16  --------->ANAC58       <---------ANAC58 <---------HSFB2a(1)   <---- ----->MYB83   <---------LBD16    --------->ANAC58      <-------TEIL  --------->O2 <---------DEAR3(1)   cctatcatggaacggaggccggagtacattccgaacaagcttccccacaagaactatgtgcgtgtattagacacgacgcttcgtgacggtgaacaatctc  7718500                                                                                                <----                                                                                          <---------ANAC58      <---------ALFIN1                         <---------STY1(2)                          <---------ANAC46     <---------At4g35610                       --------->At4g35610                        <---------ANAC58  <---------ZAT14  --------->ZAT14         <---------At4g35610                          <-----------HVH21  --------->ZAT14  --------->LBD16         <---------ZAT2                              --------->ALFIN1 --------->ALFIN1 ----------->RAV1(1)      --------->ZAT2                            --------->LBD16 ------->LBD16    --------->DEAR3(1)       --------->At4g35610                     <---------LBD16<-- ------>LBD16    --------->ANAC46          <------NtERF2                       <<<<<<<<<MYB2<-------- ------LBD16   <---------ALFIN1        --------->AtLEC2    --------->REM1(2) <------MYB83<------NtERF2 -----LBD16 --------->ANAC46     <---------WOX13(1)      --------->LBD16     <------MYB46(1)---------   ccggtgcagcacttactccaccgcagaagttagagattgccaggcagctagctaaactccgagtagacatcatggaagttggttttccggtgtcgtctga  7718600  Previous    Next  AGI:  At5g23020.1    Description:  IMS2/MAM-L/MAM3 (METHYLTHIOALKYMALATE SYNTHASE-LIKE); 2-isopropylmalate synthase/ methylthioalkylmalate synthase. Identical to Methylthioalkylmalate synthase 3, chloroplast precursor (MAM3) [Arabidopsis Thaliana] (GB:Q9FN52;GB:Q70YR5;GB:Q70YR9;GB:Q70YS1;GB:Q70YS3;GB:Q8VX05;GB:Q8VX46;GB:Q9C5X5); similar to MAM1 (2-isopropylmalate synthase 3), 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT5G23010.1); similar to methylthioalkylmalate synthase b [Arabidopsis cebennensis] (GB:CAJ55510.1); similar to methylthioalkylmalate synthase b [Arabidopsis lyrata subsp. lyrata] (GB:CAJ55516.1); similar to methylthioalkylmalate synthase b [Arabido Range:  from: 7718124    to: 7721842    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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