Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <------MYB83                                             <-----------GT1       <------MYB46(1)                                       --------->AHL20(1)        <--------P                   --------->AHL20(2)  <---------AHL20(1)       <---------ANAC46           <---------AHL20(2)          <---------AHL20(2)      --------->ATHB12        <---------RVE1(1)      <---------ATHB12                --------->YAB1           --------->MYB55(2)     <---------ARR11(3) --------->AtLEC2------->TEIL        <---------ATHB12          <---------MYB46(3) ----------->GT1 ---DAG2--------->TOE2(3)          --------->WOX13(1)      --------->ATHB12     <---------WOX13(1) ----DOF2 --------->AHL20(2)   <-----------GT1            <---------YAB1--------->MYB52(2) --GT1--------->ICU4<---------AHL20(2)--------->AHL20(2)  <---------AHL20(2) <---------YAB1<---------AHL20(2)   tcgatgcaaacattaaatgtatttaatagtttttaaccaattatattttacatcatattttttattggttggattagttgtaattggtgatatttttttt  7702700                                                                                             <-------                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<                                                                <---------AHL20(1)           ========                                         <---------ANAC58       --------->AHL20(1)   --------->GLK1(2)                                --------->TOE2(3)      --------->AHL20(2)            <-----------ARR10                              <---------AHL20(2)      --------->AHL20(2)             --------->ARR11(3)                          <---------AHL20(2)        --------->TOE1(3)                <---------ARR14(2)                         --------->AHL20(1)         --------->TOE2(3)                <---------ARR11(3)                         <---------AHL20(1)         <----------DOF2   <---------TOE2(3) <----------DOF2   ----------->GT1    <---------AHL20(2) <---------ANAC58  <---------AHL20(2)        --------->ARR14(2) ---------->DOF2      --------->AHL20(2) <---------ANAC46  --------->AHL20(2)       <---------ARR14(1)   aaaaaaagataaatcaaatgagatttatatattttcttaatttgcgtgcaaaaactttaaattaaaaatattaagaaacagagagagtatcttttctata  7702800                                                                            --------->HSFB2a(2)                                                                            <---------HSFB2a(2)                                                                      --------------->AGL15                                                                      ----------->GT1                                                                      <---------------AGL15                      <---------AHL20(2)                             <-----------------AGL3  --------                    --------->AHL20(2)        ----------->GT1   --------->ANAC58             <-------                    <---------AHL20(2)       <---------TOE2(3)  --------->ANAC58       <---------AHL20(2)                  <---------AHL20(2)    --------->AHL20(2)      --------->ANAC46      --------->YAB1                <---------AHL20(2)--------->At4g35610        --------->TOE1(2)   ----------->GT1 --------AGL15  --------->AHL20(2)<---------At4g35610 ----------->GT1================================ ---------TOE2(2) --------->AHL20(2)    <---------AHL20(2)   --------->TOE2(2) ---------->DOF2 ======================================================================================MADS_MADS-----   cataggtatatcacttatatatatatatatgtatacagctaaatatttatgtaaaaatgtaaacatacgaaactgtttatagaaagtataatattctaaa  7702900                                                                                      <---------MYB52(1)                                      <---------ARR11(3)                             --------->At4g35610   --------->CCA1(2)    <---------AHL20(2)                                           --------->LBD16   --------->GLK1(1)    --------->AHL20(2)       <---------ANAC58      --------->AHL20(2)  <---------ARR11(3)   --------->AHL20(2)        <---------ANAC46      <---------YAB1<---------At4g35610  --------->ARR11(3)--------->ICU4    --------->ARR11(3)               <---------AHL20(2) ------->AGL15     <---------AHL20(1) <---------ARR14(2)              --------->AHL20(1) --------AGL15     <---------AHL20(2) --------->ARR14(2)              --------->AHL20(2) ========MADS_MADS--------->YAB1    ----------->ARR10  <---------TOE2(3)      <---------YAB1 ---->YAB1   ----------->GT1   ---------->DOF2   <---------ANAC58     <---------AHL20(1)   ataagatatcaaacacagtataatatttaattttaaagaagatactattttgcgtttaatgttttcatcgaatataatttcttattccgctaactcaaat  7703000                                                              <---------------AGL15                                                             ----------------->AGL3                                                             <-----------------AGL3                                                             ========================================                                                        --------->RVE1(1)                                                       <---------ARR11(3)                                                       --------->GLK1(2)                                                       --------->ARR11(3)                                                      --------->CCA1(1)       <---------AHL20(2)                                                 --------->AHL20(2)          --------->AHL20(2)             --------->TOE2(3)                  --------->AHL20(2)   ----------->GT1          <-----------GT1                    <---------AHL20(2) --------->AHL20(2)----------->GT1     <---------YAB1                          --------->AHL20(2) ----------->TBP   <---------ANAC46    <---------AHL20(2)               ----------->GT1  --------->RVE1(1)  --------->AHL20(2)    <---------AHL20(1)             ---------->DOF2  --------->AHL20(2) >>>>>>>>>GATA-1  <---------YAB1             --------->ZAT6 --------->AHL20(2)--------------->AGL15            *TSS   gtttattatttttaacatcaaaatgtttctaatactaaaaagtttaataaataaaaaaatctctctataaatagataaattatatcgtataatgttcaaa  7703100                            <---------TOE2(3)                      <---------------AGL15                                                         <                   ------>ZmHOX2a(1) <---------ARR11(3)       --------->ANAC58          ----------->HVH21           <---------ARR11(3)   ---------->DOF2           --------->ANAC55(2)<----------DOF2       <-       <---------ALFIN1    ---------->DOF2               <---------TOE1(2)  <---------ANAC58---------       --------->ANAC46 --------->TOE2(3)     <----------DOF2 --------->ANAC58        --------->At4g35610     <---------ALFIN1<---------ALFIN1--------->ARR11(3)  --------------->AtSPL8       <---------At4g35610 =====================================MADS_MADS         ------>ZmHOX2a(1)   <---------ANAC58<--------   acaattcccacactatctttcctccacattaaagtaaagtatctctctcttttttctcctacgtactccatagtgatggcttcatcgcttctgacatctt  7703200                   <---------TCP16(1)                   <---------ARR14(2)              --------->MYB52(1)     <---------MYB52(1)             <---------ALFIN1<-------GAMYB             --------->AtMYB61  <------MYB46(1)            <---------MYB55(2)  <------MYB83                                  ----------->HVH21           --------->SPL7   <---------MYB46(3)                              ----------->RAV1(2)     -           ------>MYB46(1)  --------->MYB55(2)                             --------->LBD16          -       ------>ZmHOX2a(2)   --------->ALFIN1                                ------>NtERF2            -   <---------YAB1  --------->ARR14(2)<-----------HVH21                    --------->ANAC46         <- ---------MYB52(1) <---------TCP20  <---------DEAR3(2)          <---------ZAT14                ------ ------GAMYB--------->MYB46(3)<--------P          <----------DOF2<---------ALFIN1            -------- >ARR11(3) -------->P <---------ALFIN1    <---------ZAT6        --------->ZAT14              -------- -ARR11(3) ------>MYB83  --------->DEAR3(1)  <-----------GT1    <---------ZAT18       ---------------   ccgttatgatccctaccaccggttccaccgtggttggccggtcagtgttaccctttcaatcttccctgcactctctccgcctgacccattcgtacaagaa  7703300                                                                                        <------NtERF2                                                                                       --------->LBD16                                                                                       <------NtERF2                                                                                     <---------ANAC46                                                                                     <---------LBD16                                                                                    <------NtERF2 --------->LBD16                                                                   ------>NtERF2 -------->ANAC46                                                                   <---------MYB46(3) -------->ANAC58                                                            <---------SPL7 -------->ANAC58                                                          --------->HSFB2a(2)       - --------LBD16                             <------NtERF2                  <---------HSFB2a(2)       - --->ARR14(2)                             --------->LBD16              <---------MYB52(1)        ---- ->ANAC58             <----------DOF2    <---------RAP2.6(2)       ----------------->AGL2       ----- ->ANAC58       <-----------RAV1(1)     <---------LBD16            <-----------------AGL1   <-------TEIL >AtSPL3   <---------At4g35610       ---------->DOF2         ------>ZmHOX2a(2)    --------->ALFIN1<--   ccccgcattgttcatctcatgttgctcttctgtgtccaaaaatgcggcaactagttctactgatctcaaacccgttgtggaacggtggccggagtacata  7703400                                                                                          <----------                                                                                          <------NtERF2                                                                                         --------->At4g35610                                                                                         <---------At4g35610                                                                                         ------>NtERF2                                                                                         --------->LBD16                                                                                         <------NtERF2                                                                                        ----------->RAV1(1)                                                                                        --------->RRTF1(2)                                                                                        --------->DEAR3(1)                                                                                        --------->RAP2.3(2)                                                                                       --------->RAP2.3(1)                                                 <-----------HVH21                     --------->RRTF1(1)                                                 --------->LBD16                      --------->LBD16                                                --------->ANAC55(2)                   ------>NtERF2            ------>NtERF2                       <---------ANAC58                      <---------ATERF1(1)           ----------->HVH21            --------->ANAC58                              --------->At4g35610          <---------HSFB2a(2)           --------->ANAC46                          --------->ANAC46          --------->HSFB2a(2)           ----------->HVH21                       <---------ALFIN1     <---------HSFC1(2)                 --------->ANAC58                    ------>ZmHOX2a(2)     --------->HSFC1(2)                 <---------O2   --------->At5g28300 <------ZmHOX2a(2)    --------->ANAC58       <---------ANAC58     <---------ANAC58          --------->ARR14(2)    --------->ANAC58       <---------ANAC58     <---------ANAC55(2) ------>ZmHOX2a(1)--------->DEAR3(1) ----->MYB83--------->MYB52(1)     --------->ANAC46  <---------ANAC46     <---------ARR14(2) ----->MYB46(1)            <---------ANAC46     <---------ANAC46    ===============HOX2a_HOX2a ----->ANAC46             <-------TEIL  --------->O2 <---------DEAR3(1) <---------MYB46(3)=========== ---->MYB52(1)--------->ANAC58  <---------ARR14(2)----------->HVH21 ==============HOX2a_HOX2a ------- -------MYB59 --------->ANAC58  --------->ARR14(2)----------->TGA1----------->RAV1(2)--------->ANAC46   ccgaacaagcttcccgacggaaactatgtgcgtgtattcgacacgacgctccgtgacggtgaacaatctcctggtggatccctcactccgccgcagaagc  7703500                --------->ANAC58                --------->ANAC58               <---------ZAT18             --------->ZAT2             --------->At4g35610             <---------At4g35610                              <---------At4g35610         ----------->RAV1(1)                                  --------->At4g35610         <-----------HVH21                                <---------ARR11(3)        ----------->HVH21                              --------->LBD16        <---------ETT(1)                              <---------HSFB2a(2)        --------->ANAC58                              --------->HSFB2a(2)        --------->ANAC58                              <---------LBD16        --------->ANAC46                             <---------LBD16    ----------->GT1 -RAV1(2)<---------ALFIN1                      <------MYB83<------ZmHOX2a(2) ====================RAV     --------->REM1(2) <------MYB46(1)----------->RAV1(2) -->GLK1(2)  <---------ZAT2--------->LBD16     <---------DEAR3(2)       <---------ZAT6     --------->AtMYB61   tagagattgcccgacagctcgctaaactccgagtagacatcatggaagtcggttttccgggatcatctgaagaagagttagaaaccattaagaccatcgc  7703600  Previous    Next  AGI:  At5g23010.1    Description:  MAM1 (2-isopropylmalate synthase 3); 2-isopropylmalate synthase. Identical to Methylthioalkylmalate synthase 1, chloroplast precursor (MAM1) [Arabidopsis Thaliana] (GB:Q9FG67;GB:Q70YX4;GB:Q70YX9); similar to IMS2/MAM-L/MAM3 (METHYLTHIOALKYMALATE SYNTHASE-LIKE), 2-isopropylmalate synthase/ methylthioalkylmalate synthase [Arabidopsis thaliana] (TAIR:AT5G23020.1); similar to methylthioalkylmalate synthase a [Arabidopsis lyrata subsp. lyrata] (GB:CAJ55515.1); similar to methylthioalkylmalate synthase a [Arabidopsis cebennensis] (GB:CAJ55509.1); similar to methylthioalkylmalate synthase a [Arabidopsis lyrata subsp. petraea] (GB:CAJ55506.1); conta Range:  from: 7703095    to: 7706899    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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