Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->YAB1                      --------->YAB1                     --------->ICU4                                                      <---------YAB1                     <---------YAB1  ----------->RAV1(2)                       ======================                   --------->YAB1   --------->GLK1(2)            <------ZmHOX2a(1)   ----------->GT1                   <---------ICU4  <---------ARR14(2)            =====================HOX2a_HOX2a -----ZmHOX2a(1)  --------->ICU4   <---------GLK1(2)      --------->GLK1(2)    ------>ZmHOX2a(2) -------At4g35610 <---------YAB1   --------->ARR14(2)    --------->YAB1      --------->ARR11(3)   <-- -------RAV1(2) --------->YAB1--------->MYB52(1)        --------->ICU4       <---------AGP1      ---- -----HVH21 <-------TEIL --------->AHL20(2)             <---------ATHB12   ----------->ARR10---------   aggagataccaaaatgcataataataataaaaaaacagaacctgatgagctcttagcaataatctgaggagactgagttgatctgggaagtaagatagaa  7619600                   <---------HSFB2a(2)      ----------->RAV1(2)        ------>MYB46(1)            --------->YAB1      --------->At4g35610      --------->TOE1(2)           <<<<<<<<<ARR1 --------->YAB1    <---------ALFIN1----------->GT1                        <<<<<<<<<ARR2 --------->AHL20(2)     <---- ====HOX2a_HOX2a   --------->HSFB2a(2)                     <---------ATHB12     --------->YAB1------- ----ZmHOX2a(1) --------->GLK1(2)------>MYB83            --------->WOX13(1) ---------->DOF2   <------ ------->GT1    --------->ARR14(2)               --------->ANAC58     ------>MYB46(1) ------->GAMYB-- >CCA1(2)       <---------ARR14(2)               --------->ANAC58     ------>MYB83 --------->MYB52(1)   ggagaaacacctgcagaggttctggtaacaaaacctacaaaacccattatcaagaaaaacaatcataaaaccaaattataaagaataacagaccaagata  7619700                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                             --------->HSFC1(2)                                                             <---------HSFB2a(1)                                                             <---------HSFC1(2)               <------     --------->AHL20(2)            ------------------------>ANAC81          --------->ANAC58  ------- -----ICU4                        <----------ID1             --------->HSFB2a(1)              ------- -->ARR11(3)                  ---------->DOF2              ---------->DOF2  --------->ANAC58 -------- ---ARR11(3)                --------->YAB1                <------ZmHOX2a(1)<---------LBD16   <------- ------->YAB1     --------->ZAT2----------->GT1         --------->MYB59  ----------->HVH21 --------->LBD16   atgacaatttcatagacacgagctctgtaatgaaaagaaacaaaaaaaaaaaaacaattaggaaagttctctactgcgacggaagacaaaacccagatat  7619800                                                                                     ----------->GT1                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                             <----------ID1<---------ANAC58       --------->WOX13(1)                                ---------->DOF2   <---------ANAC46  <-------TEIL                                       --------->At4g35610   --------->ANAC55(2) ---GLK1(1)                                          <---------At4g35610   <---------ANAC58 -->GLK1(1)                                      --------->GLK1(2)         <---------ANAC55(2) -->CCA1(2)              <---------At4g35610  ----------->ARR10            <---------ANAC55(1) ->ARR14(2)             <---------ZAT6    <---------TOE2(3)  ----------->GT1  --------->REM1(2) --ARR11(3)    ---------->DOF2   <-----------GT1<---------GLK1(2)         <<<<<<<<<NAP              <   cagtttcatcaattagacaaaggctagagctaattttacaggttgagatagattctgctaaaagggagaaaacacttacgtgtagaaacgaaaatagaag  7619900                                                                                       <---------LBD16                                                                                      <---------LBD16        --------->ANAC58                                                              <-----------RAV1(2)        --------->ANAC58                                    <---------At4g35610     *TSS      ---------->DOF2      <------ZmHOX2a(1)             <-------TEIL      --------->ALFIN1 ------ZmHOX2a(1)         ----------->GT1      <---------LBD16            <------ZmHOX2a(1)     >>>>>   aaggatgcgaaagcaaaattggtctaagaggaaaatcgaagaggtttactctggagaaattcatcagagagtatgaggagggagagtttcagggagaaga  7620000                                                                                 <---------ANAC58                                                                             <------------CBF                                                                           --------->AHL20(2)                                                                           <---------AHL20(2)                                                        <---------RVE1(1) --------->AHL20(1)                                                       --------->ARR11(3) <---------AHL20(1)                                                       <---------GLK1(2)  <---------AHL20(2)                                              <<<<<<<<<<MYB80         <---------AHL20(2)                                             <------MYB46(1)          --------->AHL20(2)                                             <------MYB83            --------->AHL20(2)--------->YAB1                   ---------->DOF2          <---------AtMYB61   --------->YAB1   <---------ANAC58          <---------STY1(2)               <---------MYB52(1)<---------AHL20(2)<---------WOX13(1) >>>>TBF1 --------->STY1(2)     <-----------GT1        <---------ARR11(3) --------->AHL20(2)    <----   agaagacacactagctagccttcaagcgtttttttatccacttcgtttggtttgaaagatttttaatcaaaaaaaatttaattgcctattaataagttaa  7620100                 --------->TOE2(3)                --------->ATHB12           <---------ARR11(3)                                                               ---------           --------->ARR11(3)                                                         --------->YAB1<    --------->TOE2(3)                                                              --------->YAB1  --   ----------->GT1     <---------MYB46(3)                                         <---------AHL20(2)- -----TOE2(3)--------->TOE2(3)                       <------ZmHOX2a(1)           --------->AHL20(2)<-   tgaattcgttaaataccttcattagtggttagagattgttttttctcccattggaggagactcgagagaccccttcttcgatttttaataaaaacaaaga  7620200    ---------->DOF2 ->DOF2    ------------------------>ANAC81                                                  <-------- ---------AHL20(2)                                                    --------->ATHB12   --------->ANAC46 ------->AHL20(2)                      --------->At4g35610           <---------YAB1    --------->ZAT6 -------->AHL20(2)           --------->DAG2                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------AHL20(2)           ---------->DOF2      <<<<<<<<<TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   atttaataaagaagatgaaaacgagagaataaaagtgaatgagcaaacttcttcttcttgaaaaatgaagtaccattggagatggtcttacactacaatt  7620300                               <---------AHL20(2)                             --------->AHL20(2)                           <---------AHL20(2)                           --------->AHL20(2)                         --------->AHL20(2)                         <---------AHL20(2)                       --------->AHL20(2)                       <---------AHL20(2)                     --------->AHL20(2)                   --------->AHL20(2)                   <---------AHL20(2)                 --------->AHL20(2)                 <---------AHL20(2)                                                          <-------               --------->AHL20(2)                                                            --------               <---------AHL20(2)             --------->AHL20(2)                       <---------ANAC58           --------->CCA1(2) <---------------AGL15                                     <---------ANAC58          --------->ARR11(3) <---------AHL20(2)    <-----------GT1                --------->YAB1   --------->TOE1(2) <---------AHL20(2)     <---------TOE2(3)                    <---------YAB1 -YAB1    <---------ARR11(3)<-----------------AGL3--------->AHL20(2)----------->HVH21  <---------ANAC46   gagaacataagagatatatatatatatatatatatatatggaagttaatgaattaactatacaagacttggtgacaaagttttatgatagcttggagctt  7620400      --------->YAB1                                                                     <---------ANAC55(2)  ----------->GT1                                                                        --------->ANAC55(2) --At4g35610             <-----------GT1                                         <---------ZAT18 ->At4g35610    <---------TOE2(3)                                                --------->ZAT18   <-   aagttggataatagttttatggataattatccaatttcaacacaattttgttttttgagcaactctctaggttacacccatagttcacaatacatgacta  7620500  Previous    Next  AGI:  At5g22800.1    Description:  EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding. similar to ALATS (ALANYL-TRNA SYNTHETASE), ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G50200.1); similar to hypothetical protein OsI_021572 [Oryza sativa (indica cultivar-group)] (GB:EAZ00340.1); similar to hypothetical protein OsJ_019950 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36467.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47482.1); contains InterPro domain Phosphoesteras Range:  from: 7616076    to: 7619984    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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