Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ----------->HVH21                                                                             <---------GLK1(2)                                                                       <---------GLK1(1)                                               ----------->HVH21      <---------ARR14(2) <-------TEIL                             --------->ANAC58            --------->ARR14(2) ------AHL20(2)                   --------->YAB1                   --------->ANAC58        ---------- ---->AHL20(2)              --------->YAB1--------->ANAC58         --------->ANAC58 <-----------RAV1(2)   aaatgcattgttttgagacgaggtagagaaacatgatcaaaatcaggcaatgacacattatggagtcgcaaggataccagagtctcacaggtgtaaaggc  7539300                                                                                          --------->ANAC55(2)                                                                                          --------->ANAC58              ------>ZmHOX2a(1)                                                           --------->ANAC58              ----------->HVH21                                                           <---------ANAC55(2)            ----------->RAV1(2)                                                --------->MYB46(3)            --------->At4g35610                                               <------ZmHOX2a(2)         --------->At4g35610                                                 <---------ARR14(2)     -    <---------GLK1(1)                                           <-----------GT1------>ZmHOX2a(2)    -    --------->GLK1(1)           --------->MYB46(3)     <----------DOF2       --------->ARR14(2) <----  <---------ANAC58--------->TOE2(3)    <---------CCA1(2)        --------->MYB52(1)    <-----------HVH21  <---------ANAC58<---------MYB59------->GAMYB <-----------RAV1(1) ------->GAMYB<---------ALFIN1----- >DOF2   <---------At4g35610    <---------MYB55(2)     <---------DAG2 <----------DOF2<---------ANAC46   tatggggtatcagctcctgacctaaataactccaacgacctatatccaaatgttgtactttacgcttaaccgcattgtggatccactgcgtcaagtaaga  7539400                                                                                            ---------                                                                                           <-------TEIL                                                                                     --------->LBD16                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                                   ------->MYC3  --------->YAB1                                                                   <-------MYC2 <---------ATHB12                                                                  <-------MYC3 ----->MYB83                                         --------->HSFB2a(2)           ------->MYC2 ----->MYB46(1)      --------->ANAC58                <---------HSFB2a(2)        <---------ALFIN1 -----ARR11(3)       --------->ANAC58       ------->TEIL       --------->HSFB2a(2)--------->ANAC58 ---->ARR11(3)     ---------->DOF2         <---------AtLEC2    <---------HSFB2a(2)--------->ANAC58<--   cctatcatgctgttttttttcaaaagcaagtttgagtttgtgtatgcatgtctctctagaggtatctagaaaaccatggacaacacgcgcaaattcatag  7539500                                                                                            ---------                              ------->GAMYB                                               -------->P                           ----------->RAV1(1)                                        ------->GAMYB                  --------->DOF5.7(2)            ------->TEIL                         --------->ANAC46                 --------->TOE2(3)      ---------->DOF2                             ---------->DOF2                 --------->TOE1(3) --------->ARR14(2)                              --------->MYB52(1)                 ----------->GT1   <---------ARR14(2)      <---------CCA1(2)      ------>ZmHOX2a(1) >YAB1 <---------GLK1(1) ----------------->AGL1 <---------GLK1(2)                <---------MYB59    < ---------GT1   ----------->GT1   <------ZmHOX2a(1) <----------DOF2      --------->ZAT6--------->At4g35610   taaccatggaactctgaaacgttaaattccaacagaggaaccgaaagactgaatcttttccatctcttggacaaaacactagtcctaacagcaacctttg  7539600                             <---------ATHB12                    <---------ALFIN1                  <-----------HVH21     <---------MYB52(2)                                 <---------ANAC58                 --------->ANAC46       --------->MYB46(3) <---------ANAC58                <---------ANAC58                 ----------->HVH21      <------------MYB.PH3(2) <-----------GT1  <---------YAB1              <---------ARR14(2)    <---------MYB52(1)     <---------ANAC58 <---------ANAC58              --------->ARR14(2)   --------->LBD16    --------->YAB1        <---------ANAC58 >TOE2(3)     --------->GLK1(2)    ----------->GT1   ----------------------->TaNAC69(2)<---------ANAC58 ------ZmHOX2a(1)<---------ETT(1)<---------LBD16    --------->ARR11(3)------>ZmHOX2a(1)<---------ANAC58   taggaagattagagagtatccgacacagcaaatcatccggtaacaaacttatactatcttgacttgttactcctctcttcgtgctcattgtttgcttaac  7539700                                                                               <------ZmHOX2a(2)                 =====================HOX2a_HOX2a                              --------->GLK1(1)                 ------>ZmHOX2a(2)                                             <---------GLK1(1)                --------->CCA1(2)                                             <---------ARR11(3)                ======================HOX2a_HOX2a                             --------->ARR14(2)                <------ZmHOX2a(2)                                             --------->ARR11(3)               <---------ARR11(3)                                             <---------ARR14(2)               <---------ARR14(3)                                             <---------ARR14(3)               --------->ARR14(3)                              --------->AHL20(1)               --------->ARR11(3)                              <---------AHL20(2)               <---------AGP1     <---------HSFB2a(1)          --------->AHL20(2)               --------->AGP1     ----------->GT1              <---------AHL20(1)     ------>NtERF2               <---------ARR14(2) <------MYB46(1)        <---------MYB52(1)  --------->GLK1(1)               --------->ARR14(2) <------MYB83   <---------At4g35610         <---------GLK1(1)             ----------->ARR10  <---------------------WRI1    --------->AHL20(2)------>ZmHOX2a(2)         --------->ANAC46      <------ZmHOX2a(1) --------->At4g35610      --------->LBD16        <-------TEIL  ------------>CBF     ---------->DOF2<-------TEIL  <---------LBD16             -   tcttgagacatacacaagatctgcatcaatagaggaaggttagaacaaagaagctcaccgttcattaaattagcaccggagatctctctgcctctcagac  7539800                                                                                                    -                                                                                                   --                                                                                                  <--                                                                                                 >>>>                                                                                                 >>>>                    <---------ANAC58     <---------LBD16                                         >>>>                --------->ARR11(3)     <---------GLK1(1)                                         >>>>             <------ZmHOX2a(1)        --------->ARR11(3)                     ------>ZmHOX2a(1)   >>>>            --------->LBD16           <---------ARR11(3)                     <----------DOF2     >>>>          <-----------RAV1(2)       <---------TOE2(3)                 --------->MYB52(1)       <----- ---------->RAV1(2) <---------ANAC58<---------TOE1(3)               <---------MYB52(2)    <---------MYB52(1)   tcaccagaggcttcaggagatttcgtcttctagggtttaagatttcggaaaactatctggttcttaagaaactaacatcctttgatttatctgttatttt  7539900                                        ------>MYB83     <---------ARR11(3)                 --------->MYB52(1)     --------->ARR11(3)                 ------>MYB46(1) -------->LBD16                       <---------MYB46(2) ------->ANAC46            --------->ANAC58                    ---------->DOF2 -------LBD16              --------->ANAC58      ----------->GT1 >>>>>>E2Fd                --------->AtLEC2   --------->ARR14(2)    <---------GLK1(1) >>>>>>E2Fe               --------->WOX13(1)  <---------ARR14(2)    --------->GLK1(1) >>>>>>E2Ff       --------->ARR11(3)  <---------MYB111(1)   --------->AHL20(2)                     -- >>>>>>E2Fb       <---------ARR11(3)  <---------MYB59    --------->AHL20(2)    --------------->AtSPL8 >>>>>>E2Fc      --------->YAB1      --------->ANAC46   <---------AHL20(2)     <---------------AtSPL8 >>>>>>E2Fa    <---------TOE2(3)     --------->ANAC55(2)--------->AHL20(2)   <-----------RAV1(1)===== ------GT1    ---------->DOF2      <-----------GT1 <---------MYB52(1)  --------->TOE2(3)        -----   cccgcgagattttagttaaagataatatcaagcaaatatacctaactaaatccgttaaataaataaaaagaaatctcaaatgttgtacttgaatttgatc  7540000                                                                  --------->ICU4                                                             --------->ANAC46                                                             --------->ANAC58                                                             --------->ANAC58                                                          ------>MYB46(1)                                                     <---------ALFIN1                                          --------------------->WRI1     <------ZmHOX2a(1)                   --------->YAB1 <---------MYB111(1)     ----------->RAV1(1)<-    <----------ID1  --------->YAB1      <---------YAB1  --------->AtMYB61     <---------At4g35610  -- ------->ANAC46    <---------ATHB12    --------->ARR11(3) ------>MYB83        --------->At4g35610  -- ===========HOX2a_HOX2a                <---------ARR11(3) -------->P         --------->ANAC58      <- ->ZmHOX2a(2)    --------->WOX13(1)   --------->YAB1--------->MYB46(3)       --------->ANAC58      --   tacacaaggacaaataagacaatcactatgtccgactgtatgatcatagtaagaaccacctacaagtcattttgaaggtcagcaacatagacaatttgac  7540100                            --------->ARR14(2)                            <---------ARR14(2)                 <---------GLK1(1)                 --------->GLK1(1)                 ---------->DOF2                --------->ARR14(2)           --------->TCP20     --------->STY1(2)      <---------ARR11(3)                                                     <-     <---------STY1(2) ----------->GT1       <---------PCF5                     <---------ZAT14    -- ------MYC2     <---------ARR14(2)           <---------PCF2                 <------ZmHOX2a(1)      <- ----->MYC2  --------->ANAC46        --------->HSFC1(1)               <---------ANAC58             -- ----->MYC4  --------->ANAC58        <---------HSFB2a(2)              <---------ANAC58             <- ------MYC3  --------->ANAC58        --------->HSFB2a(2)            --------->ARR11(3)        ------- ----->MYC3 <---------LBD16 --------->ARR11(3)            --------->ANAC46<---------TOE2(3) <--------   atgtgctagatagccacggaaatgcgagtaaatcttcttctcgaatgggaccgctcgaacacagaacaaatttcttgaggattgcagagttttctgcaaa  7540200  Previous    Next  AGI:  At5g22670.1    Description:  F-box family protein. Identical to Putative F-box/FBD/LRR-repeat protein At5g22670 [Arabidopsis Thaliana] (GB:Q9FNJ4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G22660.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 7538195    to: 7539688    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g22680.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G22720.1) Range:  from: 7540044    to: 7540751    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version