Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                           --------->At4g35610  <---------GLK1(2)                                                                        <------NtERF2 ------->HSFB2a(2)                      <---------ZAT18                     <---------ARR14(2) <----- --------HSFB2a(2)          <------ZmHOX2a(1)                    <-----------GT1          ----------- --------HSFC1(1)          ----------->GT1          --------->WRKY12        --------->ARR14(2) ------ ------->HSFC1(1)  --------------->AGL15--------->ZAT18  <----------DOF2   <---------CCA1(2) -------- ----CCA1(2)    <---------ALFIN1        <---------ZAT14  <---------DAG2  --------->YAB1   ------>NtERF2   tctagaaactcactagacacactcttagtaggaaaattagagtggacttactcgttgaacttttttttaacagaatcatatccaaactttggcaccagaa  7333800                                                 <-------GAMYB                                     --                                                 <----------DOF2                                   --                                          <---------LBD16                                         <--                                         ------>ZmHOX2a(1)                                       ----                                     <---------ARR14(2)                   <-----------GT1     <------                                     --------->ARR14(2)           --------->ANAC46            <------  <------NtERF2                    <------MYB46(1)      --------->At4g35610  --------->WOX13(1)------ ----GLK1(2)                       <------MYB83 <---------ANAC58  --------->ANAC58           <------- ----ARR14(2)                     <---------TOE1(2)     <---------At4g35610<---------YAB1  --------->ARR14(2) >RAV1(1)      --------->ANAC58  <--------P --------->LBD16       --------->ANAC58<---------HSFB2a(2) --->ARR14(2)  --------->ANAC58<---------REM1(1)<---------ANAC58--------->MYB46(3)------>ZmHOX2a(1)<- ->ANAC46 ------>ZmHOX2a(2)--------->ARR11(3)  ------>NtERF2 ------>ZmHOX2a(1)    --------->HSFB2a(2)   acgcgtcgatgatcgccaaggaagaagcagatgttgtaggttcctccggggcgttatgagctcctaacaagcgatttatcaatcctcgaactgattccgc  7333900                                            --------->MYB46(3)      <---------MYB46(3)                  ------>MYB83--------->GLK1(2) --------->HVH21                          --------->MYB52(1) ------->ETT(2)                           ------>MYB46(1) ----NtERF2                              --------->MYB55(1) ----->REM1(2)                          --------->MYB46(3) ---ANAC58                             --------->ANAC58 ---ANAC58                             --------->ANAC46 --->LBD16                             --------->ANAC58 --LBD16  --------->ATHB12    <-----------GT1        <---------GLK1(2)       --------->YAB1 --------ETT(2)      ----------->RAV1(1)<---------MYB55(2)           <---------ANAC46   gtcgacagtggatgatttatctgcaacattttttacaaaatacccaacgacttcagaatcgatgtcaaattacgcagaataatacgagagagaaacgaat  7334000                                                     <---------MYB52(1)                                             <---------ANAC58                 <---------HSFB2a(2)         <---------GLK1(2)                 --------->HSFB2a(2)         <---------ANAC58                 =============================HOX2a_HOX2a                 ============================HOX2a_HOX2a                 ------>ZmHOX2a(1)     ------>ZmHOX2a(2)             <---------ARR14(2)       <------ZmHOX2a(2)          <------NtERF2             --------->ARR14(2)      --------->ARR11(3)         <---------HSFB2a(2)        --------->ANAC55(2)          <---------AGP1 <-----------TGA1     <---------SPL7                  --------->ARR14(2)         --------->HSFB2a(2)      --------->ARR14(2)   <------NtERF2<---------LBD16      <---------ARR14(2)        <---------LBD16           --------->GLK1(2)  ------>NtERF2<---------ANAC46      <---------ARR11(3)       <------NtERF2              <---------ARR14(2) <---------ATERF1(2)                 --------->AGP1 <-----------HVH21      <---------DEAR3(1)      <- <---------RAP2.6(2)           ===============HOX2a_HOX2a    <---------SPL7------>ZmHOX2a(2)       -- --------->ATERF1(2)           ==============HOX2a_HOX2a    <---------DEAR3(1)           <-----------ARR10 <---------DEAR3(1)            <------ZmHOX2a(1)   --------->ANAC46     --------->ATHB12<---------GLK1(2)   tgggcggcatacgcgtttcctggaggttatcgaggagaagatctatagcttctccgtcatcgtcgtcgggaaattgatcggcgaaaacgagaatctcgtc  7334100                                                             ----------->HVH21                                                           --------->At4g35610                                                        ------>ZmHOX2a(1)                    <---------ZAT18           ------->TEIL <---------At4g35610             <---------TOE1(3)                <---------ARR14(2)                 --------->ANAC46             <---------TOE2(3)                <---------ARR11(3)            --------->KAN4(2)     <--    <------NtERF2   ------->TEIL              --------->ARR14(2)     <---------At4g35610      <------ --------TOE2(3)   <-----------GT1           <---------CCA1(2)   <-----------RAV1(1)  --------->REM1(1) ------->ANAC46   <---------SPL7        <XXXXXXXXXXXXXXXXXXXXMIR835-3P  <---------At4g35610   <------   taaggcatcgaatttgaggttgtaccctctgtttttgaatttcttctgtatcttcttcctcttctgactggtgctgctcattctcgctacttctctcttt  7334200                                                      <------NtERF2                                                     --------->RAP2.6(2)                                                     ------>NtERF2                     <---------DAG2                  ----------->GT1                       ------->TEIL                     <----------DOF2                <---------DEAR3(1)             <------NtERF2            --------->TOE2(2)                       --------->ATERF1(2)           ------>NtERF2          <---------ARR14(2)                        <---------ATERF1(2)           --------->LBD16          --------->ARR14(2)         <---------AHL20(2)                          <---------ANAC46 ---------GT1  --------->ANAC46      --------->AHL20(2)                         <---------LBD16 ---DAG2*TSS--------->TOE1(2)      <----------DOF2  <---------RAP2.6(2)     <---------ARR14(2) ----DOF2 ------->TEIL   <-----------GT1    <----------DOF2                 --------->ARR14(2)   ttgctctctctgaatctgcgaaacttttttcttctctctttaatttctttttgggcggcaaaactctgaaaaatcccaaatcggcgggaaacgaatgtgg  7334300                                                                                 <---------HSFC1(1)                                                                                 --------->HSFB2a(2)                                                                                 <---------HSFB2a(2)                                                      <-----------GT1        <------MYB46(1)                                                   --------->ATHB51          <------MYB83                                                   --------->ATHB12         <---------MYB46(3)                                                   <---------ICU4           --------->MYB55(2)      -                                                  <---------YAB1           <--------P               <                                                 --------->TOE2(3)         --------->ALFIN1         -                                              <---------AHL20(2)        --------->LBD16             <                                              <-----------GT1         <---------LBD16             <--                                         <---------MYB52(1)      --------->TOE2(3)     <----------DOF2                                        --------->TOE2(3)        --------->TOE1(3)  <<<<<<<ZML2  ----                            <----------DOF2--------->MYB52(2)    <---------MYB59 --------->HSFC1(1)--                         ---------->ID1--------->ANAC55(2)      ===================================== --------->ZAT18  --------->GLK1(2)    <---------ANAC55(2)      ----------------->AG<---------ARR11(3)   aagagccctaatcggtggaaattctttgttctttcgctaatacgttatttacattattgcccctctacctaaaccgggtgggtctagaactttggataat  7334400          <---------ARR14(2)     --------->MYB52(1)     <-----------GT1  --------->YAB1 <---------YAB1 -------->AHL20(2)             ---------->DOF2          <---------AHL20(2)             --------->STY1(2) ---------AHL20(1)         --------->LBD16             <---------AHL20(2)              <---------STY1(2) -------->AHL20(1)        --------------->AGL15        --------->AHL20(1)             --------->ANAC58 ---------AHL20(2)       <---------LBD16          <---------AHL20(2)             --------->MYB46(3) -------YAB1           <---------ARR14(2)         --------->AHL20(2)          --------->MYB46(3) ----->AHL20(2)        --------->ARR14(2)     ----------->GT1        --------->ZAT6   --------->ANAC58 ------->YAB1    --------->GLK1(1)         <-----------GT1     --------->ANAC46 -------->P =========================================MADS_MADS    --------->AHL20(2)   --------->ANAC46      ---   attataataacgggtccagatttcatttccggttaaagcatttttaaactgtttaaatttaatacacaaaaacactacaaacaaccactagcaagtagca  7334500                           <---------TOE2(3)                                 ----------->GT1                           <---------TOE1(3)                              --------->ZAT2                       >>>>>>>>>GATA-2                                <---------MYB52(1)                       >>>>>>>>>GATA-3                               --------->LBD16                       >>>>>>>>>GATA-4                 --------->ANAC55(1)<---------At4g35610  ------                       >>>>>>>>>GATA-1                 --------->ANAC58   <---------ZAT2       ------              --------->ANAC58                         --------->ANAC46   --------->At4g35610  ------           <------ZmHOX2a(2)               <---------ATHB12        <---------LBD16           <------- ------>ICU4  --------->ANAC58 ----------->GT1         --------->ANAC58<--------P      <---------At4g35610   atgcttataagggatcactcaagtggattgaggttgtatataccaataagtagacacacgaaatatagctccggtaagctggaaaattgagcaaaccaaa  7334600                                                                             <----------DOF2                                                                           <------NtERF2                                                                           <---------ZAT2                                                                           --------->HSFC1(2)                                                                           <---------At4g35610                                                                      --------->LBD16                                                                     <---------ANAC58                                                                     <---------ANAC46                                                                     <---------LBD16                              <----------TaMYB80                     <---------ANAC58                              --------->At4g35610                   <---------LBD16                             <-----------ARR10                    <-----------GT1                          --------->ANAC58                     --------->ARR14(2)                          --------->ANAC46                    <---------MYB52(1)            <--------   ----------->GT1        --------->ANAC58                   --------->LBD16<---------GLK1(2) >MYB83           --------->At4g35610                      <---------LBD16 <---------HSFB2a(1) --->MYB52(1)     <---------At4g35610 <---------MYB52(1) --------->ARR14(2)--------->HSFB2a(1) >MYB46(1)   --------->WOX13(1)      <-------GAMYB       --------->GLK1(2) <---------HSFC1(2) --MYB59  <-----------HVH21 --------->YAB1               <---------ARR14(2)--------->At4g35610   ctgtatggttaatgtcagtcatctccccaagcatcttcccgttgtttctgtctcgagacaatccggtttttccgggcagcttcttggtctcgctctttag  7334700  Previous    Next  AGI:  At5g22110.1    Description:  CYL2/DBP2 (DNA POLYMERASE EPSILON SUBUNIT B); epsilon DNA polymerase. similar to unnamed protein product [Vitis vinifera] (GB:CAO67938.1); contains InterPro domain DNA polymerase alpha/epsilon, subunit B; (InterPro:IPR007185); contains InterPro domain DNA polymerase epsilon, subunit B (InterPro:IPR016266); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) Range:  from: 7330828    to: 7334208    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g22120.1    Description:  nucleotide binding. similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96612.1); contains domain PTHR21678 (PTHR21678) Range:  from: 7334381    to: 7336817    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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