Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                <----                             --------->YAB1                                                    ------                            <---------ATHB12    --------->ZAT14                               ------>NtERF2                     --------->TOE1(2)   --------->ANAC46                                    -------- ->GLK1(2)           --------->TOE2(2)   --------->ANAC58         --------->ANAC58           <------- -GLK1(2)           <---------ANAC58     --------->ANAC58   ---------->DOF2     --------->AHL20(2) == >ARR14(2)          <---------ANAC58   ---------->DOF2  <------ZmHOX2a(1)     <----------DOF2<------- -ARR14(2)       ----------->HVH21<---------YAB1<---------ZAT14   --------->ANAC58       ------>ZmHOX2a(1)   ataaactgaagtattttctctgacctgcgaatcatgctgattaaagccactaaactgaggagcaaagcgagcaagttttgctttaaatgtccttggggcc  7293200                 --------->RAP2.3(3)          <-------PIF5      ===================================HOX2a_HOX2a         ----------->RAV1(2)==================================HOX2a_HOX2a ----------RAV1(1)----------->RAV1(1)     ---------->DOF2 -----ALFIN1     --------->ZAT18  --------->ANAC46                <---------HSFB2a(2)              -- --->ZAT18------->PIF5      ------>ZmHOX2a(1)                     --------->HSFB2a(2)            ---- ->PCF2  =====================RAV --------->ANAC58              ------>NtERF2           <------ZmHOX2a(1) --TCP16(1)    --------->PCF2     --------->ANAC58       ----------->HVH21         <----------------- ====================RAV   --------->TOE1(3)            ------>ZmHOX2a(2)        ==============HOX2a_HOX2a --PCF5 ------->TEIL       --------->TOE2(3)           <------ZmHOX2a(2)         ------>ZmHOX2a(2) --   actgttgatgcacctggagcccacagactccttaacaagtcaccaaaagctaaggcgatctcaccctgccagaagaaatttgatcggtgaggataaccaa  7293300                        --------->ANAC58                        --------->ANAC58                        --------->ANAC46                        --------->bZIP60(2)                       <---------LBD16                     --------->MYB46(3)                   <<<<<<<<<GT-1              --------->AHL20(2)                                                                <----           <---------AHL20(2)                                                                  ------          --------->ARR11(3)                                                                 <-------          <---------ARR11(3)           ------->TEIL                                          -------- ------->ANAC58    <-----------GT1    <---------CCA1(2)     <---------WOX13(1)             --------->ICU4 ------>DOF2  --------->ICU4        <---------ANAC55(2)    <---------GLK1(2)        <---------ANAC58 ----WRI1 <---------AHL20(1) <---------At4g35610  --------->GLK1(1)  <----------DOF2<---------ANAC58 ------->ANAC58<---------AHL20(2)   --------->ANAC55(2)   --------->ATHB12       <---------ATHB12  <-   gaagcaagagtatatatttattaaccacggcagataatatgtatctatacagaaacccatagattggcatactttcattcccaatggattgtcaagattt  7293400                                         --------->ALFIN1                                         <---------ANAC46        <---------ZAT18                <---------ANAC58        --------->ZAT14                <---------ANAC46        <---------ZAT14     <----------ID1 --------->ALFIN1      --------------->AtSPL8<---------ETT(2)    <-----------GT1         --------->ETT(2)                   --------->ZAT18  <----------DOF2   ---------->DOF2    <---------ANAC58   <---------ZAT14                           - -----AHL20(2)    --------->ANAC58    <---------DEAR3(1)  --------->ZAT14                           - --->AHL20(2)--------->ANAC58     <---------HSFC1(2)     ----------->HVH21                   -------- --ARR11(3)  --------->ANAC46    --------->ANAC58    --------->MYB46(3)                     <-------- ->ARR11(3)  --------->ANAC58    --------->ANAC58   --------->ANAC58                      <---------TOE1(2) ----------GT1    --------->ANAC58--------->HSFC1(2)--------->ANAC58                     ------>ZmHOX2a(1)   atttctttactgtactcgccaagaaagaagtcgacaagcttcggtgtgtgagccaagcactgaagggaactgttcatgaaacaagtgtttcctagattct  7293500                                                                                     ------>NtERF2                                                                            --------->ZAT6          -              ---------->DOF2                                              <---------ZAT14       <---     <-----------HVH21            <----------DOF2                          --------->ZAT14   -------- -------->ANAC58                  <---------DAG2      <---------ICU4 <---------ARR14(2)      -------- -------->ANAC58       <---------ZAT2             ---------->DOF2    <-----------ARR10       -------- ->GLK1(2) ------->GAMYB<---------GLK1(2)   --------->DAG2           --------->GLK1(2)     --------->YAB1 -GLK1(2)-------->P    <---------At4g35610 ---------->DOF2           --------->ARR14(2)   <---------ATHB12   gcaagcctgtcaaccccaaagttccagcttctccagctttacccaaaaagctcaaagaattacttcgtccaaatctgaacactgtgccaccattcatgcc  7293600                                                                                                    <                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                 ----                            --------->MYB46(3)                                                   ----                            <---------HSFC1(2)                                                   ----                            --------->HSFC1(2)                                                   <---                            <---------HSFB2a(1)                                                 <----                     <---------ANAC46                                                        ========                     --------->ALFIN1                                                     --------->HSFB2a(2) -------->YAB1     <---------ANAC46                                            --------->ARR14(2)<--- ---------CBF    <---------At4g35610                                      --------->TOE2(3)  <------ZmHOX2a(1) ->ANAC46        --------->At4g35610      <---------YAB1               --------->GLK1(2)  <---------HSFB2a(2) ->ANAC58   <---------MYB46(3)      <----------DOF2                --------->YAB1     --------->At4g35610 ->ANAC58<------------CBF   --------->HSFB2a(1)   ------------>CBF<---------YAB1      <---------At4g35610   attggtaatcccattggtttgctgtgtggaaccatcttctttttttgattccttcaatttgatggagtctgataatccataaatctgcagctctaggagg  7293700          ---------->DOF2 -----------RAV1(1) ---->ZmHOX2a(2) ----ZmHOX2a(2) ------AGP1 ----->ARR14(2)                                    ----------->GT1 ----->GLK1(2)                                    ----------->GT1                     --------->DAG2 ----->ARR11(3)                              --------->CCA1(2)                       ---------->DOF2 ------ARR11(3)          --------->YAB1     <---------ARR11(3)             --------->ANAC58 --ZmHOX2a(1)         --------->YAB1        --------->ARR11(3)             --------->ANAC58         < =====HOX2a_HOX2a--------->ICU4             --------->ARR11(1)         --------->ANAC58             - ------ARR14(2)---------->DOF2          ---------->DOF2                --------->ANAC58         -----   atctgttggaccaaaagaaaagattaataagaaatacagcatcaaagatatgagggaaaaaatggaaaatggaaggcaagtctgaaataaggcgaatgca  7293800                                                                        <---------MYB46(3)                                                                    <----------DOF2                                                                    =================================                                                                   <---------ANAC58              ----                           --------->LBD16                         <---------ANAC58              ====    --------->YAB1        --------->ANAC46                      ------>ZmHOX2a(2)                ----    ----------->GT1      <---------LBD16                       <---------At4g35610               ----  <------------CBF     --------->ARR14(2)                     <---------ARR14(2)         <----------- ---------AHL20(2)     <---------ARR11(3)                     --------->ARR14(2)   --------->TOE1(2) -------->AHL20(2)     <---------ARR14(2)--------->DAG2       <---------ARR11(3)  --------->ATHB12 ------>GT1       ------------>CBF      ---------->DOF2     ------>ZmHOX2a(1)------------>CBF    <---   gtttaattgtaaaactatggagcaatatccgcattcaactcaaaaagcatcacacttacttcctgatctgcttgttgttgacaatccttggaattgctca  7293900                                                 --------->MYB46(3)                                             --------->LBD16                                      ---                                            --------->ANAC58                                      <--   <----------DOF2                          --------->ANAC58                         <---------ANAC46 ======bZIP_DOF                   --------->ARR11(3)                --------->ANAC55(1)           --- ----->ANAC46                     <---------ARR11(3)                <---------ANAC55(2)     <-------- =============bZIP_DOF           --------->CCA1(1)                  --------->ANAC55(2)    --------->AHL20(2) ----->TGA1a         <---------ANAC58       <---------ANAC55(2)     --------->ANAC58 <---------AtLEC2 ----->bZIP60(1)     <---------ANAC58       --------->ANAC46        --------->ANAC58 <---------ANAC58 -CBF          <---------TOE2(3) --------->RVE1(1)          ---------->DOF2          <---------ANAC58 ------bZIP60(1)   <---------MYB46(3)   ---------->DOF2   --------->YAB1       <---------YAB1  <-----   catcactttcgaaaaacaaggttgtttggccagaaatatcccaaatgcgcaactacagaatcaaaagcacacgtataagttgtaattgcatgaataaatc  7294000                                               <---------ANAC55(2)                                               --------->ANAC55(2)                                               --------->ANAC58                                          <---------------AtSPL3                                       --------->ZAT18                                       <---------ZAT14                                       <---------REM1(2)                                     --------->ZAT14                                     --------->REM1(2)                                     <---------ZAT18                                                <                                   <---------------AtSPL8                                           <                                  <---------ANAC58                                                ---                                  <---------ANAC46                                                <--                                  <---------ANAC58                                                ---                                <---------ARR14(2)                                                <-- -------->GT1                   --------->ARR14(2)           <---------AtLEC2        --------->ARR14(2) -------ANAC55(2)              <---------CCA1(2)   ---------->DOF2     <----------DOF2            <-- ------>ANAC55(2)           <-------TEIL  --------->ANAC46  <-------TEIL <-----------GT1          --- -AHL20(2)                 --------->AtLEC2    --------->ANAC58        <---------DAG2--------->GLK1(2) ----ATHB12           ----------->HVH21--------->ZAT14     --------->AtLEC2   --------->ZAT2     ----   atgtaacatatagtattgcataaactgacatgcatatcgtgtacacagtacgtaaaagaacatgcatgaaacactttacctgctcagaatccaaactgaa  7294100  Previous    Next  AGI:  At5g22030.1    Description:  ubiquitin-specific protease 8, putative (UBP8). Identical to Ubiquitin carboxyl-terminal hydrolase 8 (UBP8) [Arabidopsis Thaliana] (GB:Q9C585;GB:Q0WVQ0;GB:Q9FPT2); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39929.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67426.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 7289706    to: 7293597    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g22035.1    Description:  ubiquitin-specific protease-related. similar to UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT2G40930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68958.1) Range:  from: 7293815    to: 7296347    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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