Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                    =                                                                                                    -                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                          <---------SPL7                                                                                          <---------ZAT14                                                                                          --------->REM1(2)                                                                                          --------->ZAT14                                                                                   --------->ANAC58 -                                                                                   --------->ANAC58 -                                                                               --------->At4g35610  <                    <---------HSFB2a(2)                                       --------->ANAC46      -            <------ZmHOX2a(2)                                           ------>MYB83 ----------->RAV1(2)    --------->ARR14(2)                                                  =============================    <---------ARR14(2)               <---------ATHB12                   ------>MYB46(1)<------------- ----ZmHOX2a(2)     --------->HSFB2a(2)--------->WOX13(1)               -------->P>>>>>>>>>MYB2   <--   atcacaaatctccgatcgattactcgaagtataagcgaaatcaatccatttctctccatcccaaaacaaaaccctaccatcagcaacgcctgtgtacgga  7289100 <-----------HVH21 <-------PIF5 ------->PIF5 -------->ANAC46 -------->O2 ========================bZIP_DOF -------->TGA1a ->ANAC46 ->ANAC58 ->ANAC58 >SPL7 -------->bZIP60(2)  <------NtERF2         <------MYB46(1) -------->ANAC58     --------->ATERF1(1)   <------MYB83 ---------TGA1a     <---------ATERF1(1)    ----------->GT1       <---------GLK1(1) -------->ANAC58    ------>NtERF2      <---------ARR14(2)<---------ARR11(3) =========MYC_MYB  <---------DEAR3(1)  --------->ARR14(2)--------->GLK1(2) -----SPL14--------->GLK1(2)    ------->TEIL            <---------GLK1(2) -------ALFIN1---------->DOF2--------->HSFB2a(2)   --------->MYB52(1) <---------ZAT14 ------->TEIL   ccacgtccgagagaatcaaaggcgacgctctctggaccttggatttggttaaaaaacagaatctttgatttctgaagtgaattttgtgaatctctctccc  7289200                 --------->REM1(2)                --------->ALFIN1               ------->PIF5               <-------PIF5              <---------bZIP60(2)              <---------ANAC46              <---------ANAC58              <---------TGA1a              --------->TGA1a                                          <---------ANAC46            <-              <---------ANAC58                                       <---------MYB46(3)          ----              --------->O2                                       <------NtERF2                 <-----              <---------O2                         --------->GLK1(1)--------->ALFIN1         <-------           <------NtERF2                           <---------GLK1(1)<---------AtMYB61        --------           ----------->HVH21           --------->ANAC58         <---------ZAT14         --------->ZAT14          <---------DEAR3(2)           ----------------->AGL1   --------->ZAT18         <---------ZAT14          <---------HSFB2a(2)          --------->ANAC58  --------->ARR14(2)          --------->At4g35610          --------->HSFB2a(2)        --------->CCA1(2)   <---------ARR14(2)   <------ZmHOX2a(1)<-----       <-----------HVH21      <---------ANAC46<---------LBD16  <---------ANAC46  ------>ZmHOX2a(2) <-   atggaacttcgtcgggacgtggagagataacttcgtgagagacgaaattggggaaatcggaaatggcgcagtggtggaaaggatcgatgctgcagtagag  7289300                                                                  <-------GAMYB                                                         <---------ICU4                                                         --------->ATHB12                                                        <---------YAB1 --------ANAC58                                    --------->ANAC58 ----->ALFIN1                                      --------->ANAC58 <---------MYB46(3) ----ANAC58                                  <----------ID1      <---------ANAC58                  -- --ZAT14                                  --------->CCA1(2) <-----------RAV1(1)              -------- ->ZAT14                              <---------------------WRI1 <---------ANAC46           <-------- ----ANAC58                           <------ZmHOX2a(1) --------->ICU4       ---------->DOF2<-------- --------ANAC58              <---------AtMYB61   ---------->DOF2 <---------ANAC58      <----------DOF2   tgcgagggagagggagaagaagagaagagtgatggttttaggagataagaacaaagccatgattgtggcgttgttgaaggaaagagaaacttttagggtt  7289400                                         <---------ANAC58                                         <------MYB83                                        --------->MYB111(2)                                    <---------AtMYB61                                <-------TEIL                               >>>>>>>>>>>>>>>>>LFY                               <------ZmHOX2a(2)                              <---------ARR11(3)                              <---------ARR14(2)                              --------->ARR14(2)                              --------->AGP1                              --------->ARR11(3)                           <--------P   <---------MYB46(3)                         <------MYB83<---------MYB46(3)                        <---------AtMYB61<------MYB46(1)                        <---------MYB46(3)                                              <---------ZAT6                        --------->MYB55(2)                                           *TSS                        --------->MYB46(2)                                    <-----------GT1                        --------->MYB111(2)                              <-----------ARR10                        --------->MYB59<---------ANAC46                  <---------ARR11(3)      <------ZmHOX2a(1) --------->MYB111(1)                              --------->ARR11(3)  --------      ================================HOX2a_HOX2a    ---------->DOF2     --------->ARR14(2)  <------- -------->DOF2         <--------P--------->ATHB12 --------->AtLEC2       <---------ARR14(2) --------- --->GT1               <---------MYB55(1)<---------ANAC58               <---------CCA1(2)   --------- -TOE1(3)      >>>>>>>>>TBF1<-------TEIL--------->MYB55(2)  <---------At4g35610  --------->DEAR3(1) -TOE2(3)   >>>>>>>>>TBF1<------MYB46(1)<---------DEAR3(1)  --------->At4g35610<---------At5g28300   taaaaggaggagaagaagaagaagggtaggtagatccattggtgggtgagcaatgcaaagagagctctcacttcaaatcttcaccgtctagtggaagcta  7289500                          --------->YAB1                       <---------ICU4               ----------->TBP                      <---------AHL20(2)            <---------YAB1 ->At4g35610          --------->AHL20(2) <---------YAB1        ------------>CBF         <---------ICU4 --At4g35610          <---------ATHB51 ----------->GT1        -------->P     --------->AHL20(2)    -- >ANAC58              --------->ICU4 <------------CBF    <-----------GT1 <---------ALFIN1       ----- >ANAC58 --------->AHL20(1)----------->GT1  --------->ICU4    >>>>>>>>>>>>>>>>>LFY      --------->YAB1   cagagcttaaatatgttatttgaaataattagaaaaatagattgtaattagtttataaataacttaccaatgtctccacttaaattcggataatgacaca  7289600                                                                                                -----                                                                                                -----                                                                               --------->WOX13(1)         <---------TOE2(3)                                                   <---------YAB1  --------    --------->ZAT6       <---------ANAC55(2)                             <---------ANAC58 --------->ANAC58   <---------ZAT14<---------WOX13(1)                    <---------YAB1   <---------ANAC46 --------->ANAC58  ----------->RAV1(1)    --------->ANAC55(2)   ----------->GT1    <---------ZAT14      --------->ARR14(2) ----->GAMYB    --------->ATHB12         --------->ANAC46         --------->ZAT14   --------->LBD16 ---->MYB52(1) <---------YAB1      <------ZmHOX2a(1)  --------->YAB1     <---------ANAC58 --------->ANAC46   acgacaacactatggttctgattggaaacgtgatgcaggatgcacaaaacagtcaattttgatttaagtactctggcttattaatcagggaaacgcaaag  7289700                                                  <------ZmHOX2a(1)                                              ---------->DOF2                    --------->DAG2         --------->ANAC58                   ---------->DOF2         --------->ANAC58                                      ----         ---------->DOF2        <---------------AGL15                               --------->DAG2     --------->WOX13(1)        <-----------------AGL3                               <---------TOE2(3) ---->ANAC58    <---------ZAT6 <-----------------AGL1                         --------->AHL20(2) <--- ---->ANAC58  ----------->GT1  <-----------------AG                       ----------->GT1 <---------TOE2(3) -->DOF2--------->YAB1    --------->ZAT6 ---------->DOF2         ---------->DOF2    --------->MYB59   gcaatgtctatcaaagtagtgaaaagtaagactaacaattttggaaagcaaaggacattgcaaaaacaaaagaattgagttaaaataaggtagaggtttc  7289800             <---------ETT(2)             --------->ETT(2)           <---------ARR11(3)             <---------WRKY12         --------->ANAC58                         <----------DOF2             <---------WRKY38(1)      --------->ANAC58                  ---------->DOF2         <---------AtMYB61        --------->ANAC58                  ----------->RAV1(1)       <----------DOF2            --------->ANAC46              --------->ARR14(2) ----->TOE2(3)               ----------->HVH21                  <---------ARR14(2) -------DOF2 <---------DEAR3(1)   --------->ANAC58             <---------CCA1(2)   <-----------GT1   tttaatcttctttggtcgacgagagccaaaactgacacacaagaactaaacaacaatttagaaccatatcccacaaaagggcttttctctattcttctat  7289900                                                                  ----------->RAV1(1)                                                                --------->LBD16                                                               --------->LBD16                                  --------------->AGL15        --------->ANAC58                                  <---------------AGL15        --------->ANAC58                                 ----------------->AGL3        --------->ANAC46                   --------->AHL20(1)                         <---------LBD16                   --------->AHL20(2)                  <---------AHL20(2)                   <---------AHL20(2)                  <---------AHL20(1)                   <---------AHL20(1)<---------DAG2   <---------AHL20(2)               >>>>>>>>>GT-1     ----------------->AGL1--------->AHL20(2)            ----------->GT1      <-----------------AGL1--------->AHL20(1)           <---------TOE2(3)  --------->ARR14(2)      --------->AHL20(2)           ------------------           <---------YAB1     <---------ARR14(2)  --------->AHL20(2)       ------>ZmHOX2a(1)     --------->AHL20(2)      --------->At4g35610  <---------AHL20(2)     <------------------------ANAC81    <---------WOX13(1)  --------->YAB1         --------->YAB1 --------->LBD16      <----------DOF2   tctctaattgaatatggttaataaaataatcagataccaatttttgtaagaataaaataaattccccgcaacatgtcctctcggtcttttgctcttcttc  7290000  Previous    Next  AGI:  At5g22020.1    Description:  strictosidine synthase family protein. similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G08470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67432.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 7287739    to: 7289485    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g22030.1    Description:  ubiquitin-specific protease 8, putative (UBP8). Identical to Ubiquitin carboxyl-terminal hydrolase 8 (UBP8) [Arabidopsis Thaliana] (GB:Q9C585;GB:Q0WVQ0;GB:Q9FPT2); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39929.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67426.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 7289706    to: 7293597    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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