Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------At4g35610                    --------->At4g35610                                                <---------YAB1                  --------->YAB1                                                    --------->ARR11(3)             <----------DOF2                                                        --------->AHL20(1)          <---------ARR11(3)                                                      --------->GLK1(2)          --------->ARR11(3)                                             <---------HSFB2a(2)         --------->GLK1(1)  <-----------GT1                              --------->HSFB2a(2) <-------         <---------GLK1(1) <---------AHL20(1)        <----------DOF2 <----------DOF2<---------ARR11(3)        <---------ARR11(3) <---------ARR11(3) <-----------GT1<----------DOF2  --------->YAB1 --------   tacaatagatgatatctttatcagcacaatatacttcatacctctaatacaccctctttctctctttctctctttctcgatgagaatatatcattctgga  7287000      ---------->DOF2   --------->AtLEC2                                                                   <---------MYB52(2)   --------->ANAC58                                                  ---------->DOF2 <---------At4g35610   --------->ANAC58                                 <---------ARR14(2)               --------->At4g35610  --------->WOX13(1)            -------->P          --------->ARR14(2)  --------->ZAT18           --- --HSFB2a(2)                   <-----------GT1  --------->HSFB2a(2)---------->DOF2--------->At4g35610 ->HSFB2a(2)        <------ZmHOX2a(1)     --------->ANAC46     --------->ANAC46   <---------At4g35610   taatcaagcaaagttaatggaaggacgaataacttaccatttgcccgtctcgagaattcgactacaaaccaaagagcacaatgctgcagcaaaccagaaa  7287100                                                                                              <------                                                                                          <---------AHL20(2)                                                                                         <---------AHL20(2)                                                                                         --------->AHL20(1)                                                                                   --------->LBD16                                                                                  <---------HSFB2a(2)                                                                                  --------->HSFB2a(2)                                                                               --------->GLK1(2)                                                                               <---------ARR14(2)                                                                               --------->ARR14(2) ---                                                                              <---------GLK1(2)   ---                                                                         ----------->RAV1(1)  <------                             ----------->GT1                          <---------ARR11(3) --------->AHL20(2)                         --------->ATHB12                             --------->ARR11(3) <---------AHL20(1)         <---------KAN4(2)  ------>ZmHOX2a(2)         --------->TOE2(3)<------ZmHOX2a(2) --------->ARR11(3) ------>YAB1--------->MYB52(1)                 --------->YAB1 --------->ZAT6------->GAMYB<---------ARR11(3)   ttagaatttggaataaacgaagactcttgatcggaaaaactggaagcatgcataaaccctagtaacagtagagatcaacagaatccagaaatatatttac  7287200                                                                                                    <                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----        <---------HSFC1(2)                                                                     <-----        --------->HSFC1(2)                                               ------->TEIL          ------   <----------CDC5                                              --------->ANAC58          ------>NtERF2 --------->ANAC46                                        --------->DAG2 ------>MYB83      --------->LBD16 -----GT1                                               --------->DAG2  ------>MYB46(1)  <---------DEAR3(1) ------>ANAC46       <---------TOE1(3)                 ---------->DOF2<---------MYB59   <---------LBD16 -------->HVH21      <---------TOE2(3)         ---------->DOF2  --------->ANAC58<---------GLK1(2) <-- ---AHL20(2) --------------->AGL15  <-----------GT1 <----------ID1 --------->MYB52(1)  ------>ZmHOX2a(1)   tcgacgcagaggcttctaaatttagggttatgtcaattttacaaaatcgaaaagacgaaaagggaaacgaaaccgaacccttgattctcctccggcgaat  7287300         --------->ANAC58         --------->ANAC58                                 <---------------AGL15         --------->ANAC46                            *TSS<-----------------AGL2  --------->LBD16                                   --------->REM1(2)  --------->ANAC46  ------>NtERF2                                  <---------ANAC58      <---------ALFIN1 <---------RAP2.6(2)                             <---------ANAC58    --------->ANAC58 ---------LBD16                                 <------NtERF2        <---------ALFIN1 -----HSFB2a(1)                               <---------DEAR3(1)     --------->ANAC58 -----HSFC1(2)                         --------->ARR14(2)<-----------------AGL3 ---->HSFC1(2)                         <---------ARR14(2)<-----------------AGL1  ----------->GT1 ---->HSFB2a(1)                     >>>>>>>>>TBF1<---------ANAC46   <---------ZAT18   ---------->DOF2 ----ARR14(2)                 >>>>>>>>>TBF1 <-----------HVH21 <---------ICU4------------>CBF --->ARR14(2)              >>>>>>>>>TBF1--------->MYB52(1)--------------->AGL15  --------->YAB1    <- ---------GT1   --------->CCA1(2)>>>>>>>>>TBF1<---------ETT(2)--------->MYB52(1)<---------ATHB12   <-   tttccggctacaagcgagatttaggcgaagaagaagaagaagaaacggtcgccgtgtctactactaatggcacacacctccaatggtaaaaagagaagtt  7287400                                                                                                   <-                                                                                                   --                                                                                                   <-                 <------------CBF                                                                  --                --------->ATHB12                                                                  <--               --------->AHL20(2)                                                                 ---         <----------DOF2                                             ---------->DOF2              <--      --------->GLK1(2)    <------------CBF                  --------->DAG2          <---------TOE2(3)  <------ZmHOX2a(1)   <------------CBF                      ---------->DOF2        <---------AHL20(2) --------->LBD16<---------AHL20(2)                       --------->YAB1            --------->AHL20(2) --------LBD16 <---------AHL20(2)                       <---------YAB1<---------TOE2(3)    <--------- ----------RAV1(2)<---------WOX13(1)            ---------->DOF2   <----------DOF2 --------->AHL20(2)   ttcaggagaagcttttattaattgaattgaattgaatccctcattttttcgaaagcttatgataaagtctttaaagttcagaaaattaatatttaaccca  7287500    <---------TOE2(3)   ---------->DOF2 <---------YAB1                  --------->At5g28300 -------ATHB1              ----------->HVH21 ------->ATHB12        --------->HSFB2a(1)                                   --------->ANAC58 --------ICU4          --------->HSFC1(2)               <-----------HVH21    --------->ANAC58 ------->YAB1          <---------HSFC1(2)           --------->MYB52(1)      --------->WOX13(1) -------ATHB12         <---------HSFB2a(1)    --------->TOE2(3)          <-----------HVH21 ------>ICU4       <---------ANAC58           --------->TOE1(3)         --------->ANAC46 -------YAB1       <---------ANAC58       <---------RAP2.6(2)        -------->P --GT1         <----------DOF2  ----------->GT1    <-----------GT1  <-----------GT1          --------   atgattaaagttcagagctttgcgagccttcgaccggtaaaattgcgaccttaataccggtccgatttatctaccagtcactcaaaaaaacattcacgtt  7287600          --------->TOE1(3)         ----------->RAV1(2)                                                           --------->At4g35610       <-----------GT1                                      <------MYB46(1)         <---------At4g35610  <---------ANAC46               <---------ANAC58           <------MYB83        ------------>AtMYB77 ---------->ID1      ---------->DOF2                       --------->MYB59   <---------GLK1(1)  <---- ->ANAC55(2)  <---------TOE1(3)  <---------ANAC58  ----------->GT1<-----------GT1   <-------GAMYB   tttgtcgtttaacctgaaggtttgaaagtcgattttcttggttaatttttggtcagtaaatttggtattcacgatttagaaatcgcagttgctgagtagg  7287700           <---------LBD16       --------->ATHB51       <---------ICU4      --------->ICU4                                         --------->YAB1      <---------YAB1                                         <---------ICU4  <-----------TGA1                                          --------->ICU4 --------->ANAC58               --------->At4g35610         <---------YAB1 --------->ANAC58               <---------At4g35610       --------->YAB1 --------->ANAC46  --------->At4g35610                   <---------YAB1 --ZmHOX2a(1)      <---------At4g35610                  --------->AHL20(2)                         <-   aaaacgtcataatttcggattagctgaaaaaatcagatgagtttgaaaatttgtgtgatataataataacattgagtttgtttgtgctaagtgtttgatt  7287800              <-----------------AG              <-----------------AGL1             --------->MYB52(1)             ------>MYB46(1)             ------>MYB83            --------->MYB55(1)            ----------->HVH21           <---------MYB59           <---------MYB52(2)           <---------MYB46(2)           <---------MYB111(1)                               <---------ANAC55(2)           <---------MYB111(2)                      <---------bZIP60(2) --------->ANAC55(2)          --------->ANAC58                          <---------ANAC46    --------->ANAC58          --------->ANAC58            <---------HSFB2a(2)    <---------ANAC55(1)          --------->ANAC46            --------->HSFB2a(2)    <---------ANAC46          --------->ANAC55(1)   <---------------AGL15        <---------ANAC58        --------->ANAC46        --------------->AGL15        <---------ANAC58     <---------ZAT14           ----------------->AGL2        --------->ANAC55(2)   <-----------HVH21     --------->ZAT14           <-----------------AGL3    <----------DOF2<---------ANAC55(2)     <---------ZAT18      <---------ARR14(2)      --------->ZAT18       --------->ANAC58 --------------->AtSPL3   ---------->TaMYB80      --------->ZAT14    --------->WRKY18(1)          --- --------------->AtSPL8   --------->ARR14(2)      <---------ZAT14   <-----------HVH21          ------ ----------GT1===================================MADS_MADS  <---------TOE2(3) --------->YAB1 --------   ttttcagtacacacctaacagttttgggaatttgctaaatctagaaactgagtgaagtggtttacgtataggtcaagtaatcagaggtcatagacagcaa  7287900  Previous    Next  AGI:  At5g22010.1    Description:  ATRFC1 (REPLICATION FACTOR C 1); ATP binding. similar to replication factor C 40 kDa, putative [Arabidopsis thaliana] (TAIR:AT1G63160.1); similar to hypothetical protein OsI_035332 [Oryza sativa (indica cultivar-group)] (GB:EAY81373.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67280.1); similar to replication factor C 110 kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAC76085.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain BRCT; (InterPro:IPR001357); contains I Range:  from: 7280392    to: 7287353    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g22020.1    Description:  strictosidine synthase family protein. similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G08470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67432.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 7287739    to: 7289485    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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