Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->YAB1                              <---------YAB1                         ------>ZmHOX2a(2)                        --------->GLK1(1)              --------->AHL20(2)        ----------->GT1 <------ZmHOX2a(2)                                               <----------ID1 <---------------AGL15 <---------AGP1                      ----------->GT1            ---------->DOF2 ------->AHL20(2)      <---------ARR11(3)       --------->ICU4                   ----------->GT1    < ----->AHL20(2)        --------->ARR11(3)     ---------->DOF2                  ---------->DOF2      - ------AHL20(2)    ---------->DOF2  <---------TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --- -GT1 ----------->GT1 --------->RVE1(1)    --------->YAB1  <---------ZAT6   --------->YAB1     ------   tttatatatagagaaaaaaaataaagatctctataatagaggtaagaataaagatgagttagagtaaaatagaggcaaaaataaagtttaaagacaaaaa  7276800                                              <---------AHL20(2)                                         --------->AHL20(2)                                         <---------AHL20(1)                            --------->DAG2   <---------AHL20(2)                           ---------->DOF2   --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------AHL20(2)                   <---------ANAC46 -------->ICU4      ---------->DOF2----------->GT1  ---------->ID1            <---------ANAC58 ------->DOF2<---------ARR11(3)   <---------HSFB2a(2)                         <---------ANAC58  ----- --->YAB1    --------->ARR11(3)   --------->HSFB2a(2)         <---------TOE1(2)   <------ZmHOX2a(1)   taaagatgagttggagatgttctaaagagaaaagttcgagtaaaaaatttttttttcgcaatccaacgtttgcaaattttgcgaggagaaattttgaaat  7276900                                                                           <---------AHL20(2)                                                                           <---------AHL20(1)                                                                           --------->AHL20(1)                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)---------                                         <---------AHL20(2)               --------->YAB1    ---------                                         --------->AHL20(2)           <---------AHL20(2)    ---------                                    <---------ARR11(3)         --------->AHL20(2)          ------->TEIL                              <-------TEIL                     <---------AHL20(2)        <---------ZAT14                          --------->AHL20(2)     --------->AHL20(2)   --------->AHL20(2) --------->ZAT14                    <----------DOF2 --------->ARR11(3)      --------->TOE2(3) <---------AHL20(2)      <---------AHL20(2)  <---------AHL20(2)    --------->AHL20(2)   --------->AHL20(2)  --------->ZAT18     --------->AHL20(2)  <---------AHL20(2) --------->AHL20(2) <---------AHL20(1)        <---------ZAT18 ---->ICU4--------->YAB1 --------->AHL20(2) <---------AHL20(2)--------->AHL20(2)<---------AHL20(2)   aagtatataaaatcatcttaaactttattaaattcatagatattaaaaaaataaaaaaacttcattaaattttaaattatatttttttttgtgcacccaa  7277000                          --------->ANAC46                  --------->AHL20(2)                  <---------AHL20(2)                <---------YAB1               --------->AHL20(1)              <---------ICU4              <---------AHL20(2)              --------->ATHB51              --------->AHL20(2)             --------->ICU4          --------->AHL20(2)          <---------AHL20(2)                                 ----------->GT1 >ANAC58 <---------AHL20(1)                      ----------->GT1 >ANAC46 <---------AHL20(2)                    ---------->DOF2 >ANAC58 --------->AHL20(2)            <---------GLK1(2)   ---------->DOF2   <------ZmHOX2a(1)-------   aatttagataatttaattattttaatatacgactgaatacacattcttcaaaagtaaaaaataaagaaaaaacttagaaggatgaagtacaagagaagga  7277100             <-----------RAV1(1)      <-----------------AGL3<---------ATHB12  <-------MYC3              ------------>CBF  ------->MYC3        <---------At4g35610  ------->MYC4        --------->At4g35610  <-------MYC4        --------->ZAT2  ------->MYC2    --------->TCP15(2)  <-------MYC2   --------->PCF2                            --------->AHL20(2)  -------->ABF1  ------>NtERF2                         <---------AHL20(2) <---------TGA1a<---------PCF2                     <---------AHL20(2) --------->TGA1a<-----------TCP11(1)               --------->AHL20(2) --------->O2--------->ALFIN1                    <----------DOF2                         <xxxxxxxxxxx --------->ANAC55(2)  <---------ZAT2          --------->ARR11(3)                      *TSS <---------O2===================RAV           <---------ARR11(3)                 <-----------HVH21 <---------ANAC55(2)<-----------RAV1(2)  --------->AHL20(2)<---------AHL20(2)   <---------ANAC46 ---->GT1  ----------->RAV1(2)        --------->TOE2(3)--------->AHL20(2)   --------->SPL7   xxxxxxxx   aacacgtgtcttaatctggggcccagctaaatcaattcttcgttaaaatgtctttaattaaaaaaatagaagaaatcgaacgtcgtgagagggagggagg  7277200                                                                                                  <--                               ---------->DOF2                                                    <--                    <-------MYC3                                                                 ----                    ------->MYC3                                                                 <---                    ------->MYC2                   ---------->DOF2                              <----                    <-------PIF5                  <---------AHL20(2)                      <----------    ----------->GT1 ------->PIF5                  --------->AHL20(2)                 <---------DAG2<- xxxxxsmallRNA(i)   <-------MYC2         ---------->DOF2       <---------YAB1        <----------DOF2- xxxxxxxx>smallRNA(s)--------->ANAC46  --------->AtMYB61   <----------DOF2     <<<<<<<<<TBF1   <-----   gagagagagtcaatagagaccacgcgcagagacaaaagagaccaaaagaaaattaaagagtctttgtcattgtcttccttcttcttcctttttctctccc  7277300        <---------YAB1       <---------ARR11(3) <---------ALFIN1 -------ATERF1(1) -------ALFIN1 ----->ANAC46 ------ALFIN1         <---------YAB1                     <---------ARR11(3) -----ALFIN1        <---------ICU4                       <---------GLK1(2) -GT1  --------->ARR11(3)------->TEIL                    --------->ARR11(3) --------ALFIN1     --------->YAB1                     ----------->ARR10 --------->TOE2(3)   <<<<<<<< -------->ANAC46   <---------ATHB12                 --------->TOE1(3) --------->WOX13(1)<---------CCA1(2) ----ALFIN1 <---------DEAR3(1)                     --------->ZAT6   <---------ATHB12<-----------GT1   cccccccattatcttcggcgaatcatgaatctagggttttgttttctcccataaccctagattttcttccatcaatcttatatttttctcatttcttctt  7277400                                                      <---------MYB52(1)                                                    <---------ANAC58                                                 <---------ARR14(2)                                             <---------TOE1(3)                     <-------TEIL            <---------TOE2(3)                 --------->LBD16        <---------MYB46(3)               <---------LBD16<---------GLK1(1) --------->GLK1(1)            <---------At4g35610        <---------TOE2(3)       <-----------GT1            --------->At4g35610   <---------AtLEC2  <---------ANAC58         <---------At4g35610    < <TBF1 <---------At4g35610    --------->GLK1(1) <---------GLK1(1)        --------->ARR14(2)         -   ctccgttttagctcatctcccgattcatctcgatttccatggaggttagggtttccgtttgaatttttcatttcatttctgctccttgatgcaattcaat  7277500                                               <---------MYB52(1)                                              --------->TOE2(3)                                             <---------ANAC46                                             <---------ANAC58                                             <---------ANAC58                                        <---------ARR14(2)      <---------WOX13(1)                 --------->At4g35610    --------->ARR14(2)   --------->AHL20(2) ---------ARR14(2)                <---------DEAR3(1)         <---------YAB1               <---------- -------->ARR14(2)       --------->ATHB12    ----------->GT1 <---------AHL20(2)<---------ZAT18   cgaatccccttgttctatgagcttagatgatttgattcggcgtaattgcgttaattcttctatataattgccttgattttggggactcgaagttacaatt  7277600                                                                                             --------                                                                                            <------NtERF2                                                                                        <-----------HVH21                                                                                       --------->bZIP60(1)                                                        <---------AHL20(1)             <---------bZIP60(1)                                          <---------At4g35610                          --------->TGA1a                                         --------->ARR11(3)                            ==============                                         <---------ARR11(3)                            <---------TGA1a                                        --------->GLK1(1)              <---------At4g35610 <---------SPL7                                        <---------GLK1(1)              --------->At4g35610<---------DEAR3(1)                                       <---------ARR11(3)<---------AHL20(2)            --------->O2                                  <---------YAB1        --------->AHL20(2)           ------>NtERF2                         <---------MYB52(1) ----------->HVH21         --------->ALFIN1 <---------O2       <---------GLK1(2)<-------GAMYB<---------YAB1     <---------AHL20(2)          --------->DEAR3(1) -GT1<---------YAB1    <-----------RAV1(1)--------->At4g35610   <<<<<<<<<MYB98 --------->CCA1(2)   tctcttgatgattctctcgtcgtctctgttgggattttgatgatatctgacaattcaattttttttgttagggagcgggagagacgacgacgtcggaggg  7277700  Previous    Next  AGI:  At5g22000.1    Description:  CIC7E11; protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G14220.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABD32420.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 7277186    to: 7280258    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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