Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                   ---------->DOF2                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 --------->LBD16                                                                --------->DEAR3(1)                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                               --------->ANAC58                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               --------->ANAC58                                                              --------->SPL7                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            --------->LBD16                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           --------->ANAC58                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           --------->ANAC46                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <---------LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   --------->SPL7<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 --------->ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               --------------->AtSPL8     --------->WOX13(1)                                             <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            --------->ZAT18--------->ANAC58 <---------ATHB12                                            <---------ABI4(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           --------->DEAR3(1)<---------ALFIN1                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------YAB1                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->YAB1                                     xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC46                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC58                                 xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ANAC58                              <---------MYB52(1)--------->DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <-----------GT1 --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <---------AHL20(2)<-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(s)                     <---------AHL20(1)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)       <-------TEIL  --------->AHL20(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB46(3) ----ARR11(3)        <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(s) --->ARR11(3)  ------->TEILxxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------- >AHL20(2)    <---------CCA1(2)  <---------YAB1--------------->AtSPL3<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------At4g35610   ctctacatattcatatgtatctatatattttcgttactatttgaaccgcaccgtacttctcccgcaccgcaaaacgcaatcaccattcggagcttatatc  7272800                                                                              --------->ANAC46                                                                           ------->TEIL                                                                           <---------ZAT18                                                                       <---------------AtSPL8                   --------->TOE2(2)                                <---------AHL20(2)        <---------At4g35610                                         --------->ATHB51        --------->At4g35610    <---------GLK1(1)                    --------->ATHB12        --------->ZAT2         --------->GLK1(1)                    --------->AHL20(2)        <---------ZAT2  --------->ARR11(3)                         <---------AHL20(2)      <---------AHL20(2)       ------->TEIL--------->TOE1(2)                            <---------AHL20(2)        <---------AHL20(2)    <---------REM1(1) <---------YAB1                 --------->AHL20(2)--------------->AtSPL8       - --CCA1(2)        --------->YAB1           ---------->DOF2      --------->AHL20(2)        --------->AHL20(2)   atggagatgtagctgggcaaacatatgatatcgatatccagaccctaaagaattttaaaatatcaaaaaattatttgtaccctcaaacaaatttaaattg  7272900                   <-------MYC3                   ------->MYC2                   <-------MYC4                  <---------TGA1a                  --------->ANAC55(2)                  <---------ANAC55(2)                  --------->O2           =================bZIP_DOF                              ----------->GT1           <----------DOF2----------->GT1                     ---------->DOF2      <-----------GT1 ----------->HVH21                    --------->AHL20(2) --------->AHL20(2)------->MYC4                      --------->ANAC58            <-------TEIL <---------YAB1   --------->TGA1a                    ----------->GT1            --------->GLK1(2) --------->AHL20(1)<-------MYC2                      --------->ANAC58           --------->ARR14(1) <---------AHL20(2)------->MYC3                 <---------HSFB2a(2)            <---------GLK1(2) -------->AHL20(2)<---------O2<---------AHL20(2)--------->HSFB2a(2)    <-----------GT1           ----   aattttattgacactttaacacgtgtaacagttaaattggacgactctttctaaaacgaaataaaaaagagtttaacaagagattcgtttcagtttaaga  7273000                                                                                                    <                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                              <------                                                                                              -------                                                                                      <---------ANAC58                                                                                      <---------ANAC55(1)                                                                                      <---------ANAC58                                                                      <---------MYB52(1)     --------                                                                     --------->TOE1(3)<---------ANAC46                                                    --------->ANAC55(2)        ------------>CBF  ----                                                    --------->ANAC58 --------->TOE2(3)<---------ANAC55(2)                                                    <---------ANAC55(2)    <---------ICU4    --------                                                    --------->ANAC55(1)   ------------>CBF   <-------                                                    --------->ANAC46<---------ANAC46  --------->ANAC55(2)                                        ----------->HVH21           ----------->GT1   ----------->GT1         --------->ANAC58              ----------------------->TaNAC69(2) <---------ATHB12   <-------         --------->ANAC46           <------ZmHOX2a(1)     --------->YAB1--------->WOX13(1)  ---------         --------->ANAC58         --------->ANAC58  --------->ANAC58<---------ANAC55(2)     <-------- ------->GT1                      --------->ANAC58<---------AtLEC2  --------->ANAC55(2)--------->TOE2(3)   agaaaaaaaacacgagattagtcttccaacatggacaaggacatgacaatttgcacgtaatcatatagttacgttaatcaatacaattacgtaaattaat  7273100         <-----------HVH21        <---------O2                                                       --------->At5g28300        <---------bZIP60(1)                                               <------MYB46(1)        --------->ANAC55(2)                                               ----------->GT1        <---------ANAC55(2)                                               <------MYB83        --------->ANAC46                                                 <---------DEAR4(1)        --------->ANAC58                                                 <---------MYB46(3)        --------->ANAC58                                                 <---------DEAR3(1)        --------->ANAC55(1)                                              --------->MYB46(2)        --------->bZIP60(1)                                              --------->MYB55(2)        --------->bZIP60(2)                                             <---------ORA47(1)        --------->O2                                                    *TSS        <---------TGA1a                                                 --------->SPL7        --------->TGA1a                                                 <---------MYB55(1) <---------ICU4                                                         <--------P ---------YAB1                                                         <-----------HVH21 ------AHL20(2)                                                     <---------LBD16 ----->AHL20(1)                                                  --------->KAN4(2) ------AHL20(1)                                                  --------->ARR14(2) ---AHL20(2)                                                     <---------ARR14(2) -->AHL20(2)                                                    <----------TaMYB80                --- ->AHL20(1)                                                     --------->KAN4(1)       <-------GAMYB ----->AHL20(2)                                                 <---------KAN4(1)      <---------MYB46(3) ->AHL20(2)                                                    ---------->TaMYB80     <---------AtMYB61 --AHL20(1)                                                    <---------KAN4(2)     <------ZmHOX2a(1) --AHL20(2)                      ----------->GT1            --------->AtLEC2       <---------TOE2(3) >AHL20(2)                  <------ZmHOX2a(2)              --------->LBD16<---------DEAR3(2)   ------ -AHL20(2)----------->HVH21--------->ARR11(3)        <---------ATHB12  <---------MYB52(1)--------->ALFIN1   ttattatggcacgtcacagcatcatcgtagatcaagggtaaaacagtcattctccatcatccaggcatattccggtcggtgaattgaggaggttgagcga  7273200                                             <------NtERF2                                            <---------DEAR3(2)                                           --------->ETT(1)                                           <---------DEAR3(1)                                       -                                          --------->RAP2.6(3)                                      <-                                      <---------ANAC46                  <---------ARR14(2)         --                      --------->ATHB12<---------ANAC58                  --------->ARR14(2)         <-    <-----------GT1   --------->ATHB51<---------ANAC58                  <---------GLK1(2)     =======   <-----------GT1   <---------AHL20(2)  --------->ARR14(2)         <-----------GT1           <------ZmHOX2a(2) ------>AHL20(2)     <---------YAB1<----------DOF2                 <-----------GT1           -------- ----->GT1        <-----------------AGL3 <---------ARR14(2) ------>ZmHOX2a(1)                <-------   taaattttccaattcgattctatattattggaaactactttcgggtcggcaaaacaattctccttcgattttccgattctcacaaactcaatctcgatcc  7273300      <---------ZAT2                                                          --------->HSFB2a(2)    --------->LBD16                                                           <---------HSFB2a(2)   <---------ANAC58                                                           <---------HSFC1(1)   <---------ANAC58                                                           --------->HSFC1(1) -------->GLK1(2)                                                        <---------HSFC1(2) --------ARR14(2)                                 <---------YAB1         --------->HSFB2a(1) ------->ARR14(2)                                ------>ZmHOX2a(2)       --------->HSFC1(2) --------GLK1(2)                                <------ZmHOX2a(2)        --------->ZAT2 ====================HOX2a_HOX2a               --------->ARR14(2)        <---------HSFB2a(1) ->ARR14(2)              <---------ARR14(2)    <---------ARR14(2)        <---------ZAT2             < --ARR14(2)   ------>ZmHOX2a(1)           <---------ARR14(2)    <---------ALFIN1                    -   agattccgagcttatccttctctggcgaatttcgattttctgtgtttccgatctgattacagagaaccacatcgaagcttcgagaaaaaaaaacacgatg  7273400                        --------->ARR11(1)                       --------->ATHB12                      ----------->ARR10                 ------>ZmHOX2a(1)                                                   ----------->RAV1(1)                 --------->LBD16                                                ------>ZmHOX2a(2)                 ===============================HOX2a_HOX2a                   --------->ARR14(2)              <------ZmHOX2a(2)                                --------->At4g35610  --------->MYB46(3)             ------->TEIL    <---------At4g35610   <---------ANAC46           <---------ARR14(2)             --------->ARR11(3)             --------->At4g35610<---------ZAT2<------ZmHOX2a(1)-------             --------->ARR14(2)             <---------At4g35610<---------At4g35610----------->RAV1(1)             <---------ARR14(2)           <-----------RAV1(2) ------>ZmHOX2a(1)<------ZmHOX2a(2)<----      <--------P--------->TOE1(2)        ============================HOX2a_HOX2a=====================    ----------->GT1   <---------YAB1     <------ZmHOX2a(2)    =========================HOX2a_HOX2a -----------GT1------>ZmHOX2a(2)        --------->ARR11(3)    ========================HOX2a_HOX2a  <- -------->MYB52(1)  <---------At4g35610 <---------ARR11(3)  ----------->RAV1(2)======================   tttaacgggttaatggatcctgagatgattcggctcgctcaagatcagatgagtcgtatgactcctgctgatttcgctaggatccaacaacaggtttcgt  7273500      ------>ZmHOX2a(1)  <-----------GT1                                                            ------->TEIL ---->GT1                                                        <----------DOF2 -----MYB52(1)                        --------->GLK1(2)         <---------ANAC58   >>>>>>>>>>>>>>>>>LFY ============HOX2a_HOX2a   --------->GLK1(2)               <---------ICU4 <---------YAB1 --------YAB1   -------->ATHB1    <------ZmHOX2a(1)       <---------YAB1--------->YAB1        <------ ============HOX2a_HOX2a  <---------GLK1(2)   --------->ATHB12  <---------ANAC58  <-----------GT1   tatttttcctgattcgaattattcgatcgattctgaggagaatttgtttgatttgatttgattatggctttgtatgatgaatttataccattgtttatta  7273600                                                                                  --------->LBD16                                                                                <---------LBD16                  --------->ARR14(2)                                            --------->At4g35610                  <---------GLK1(2)                                          --------->ZAT2                  <---------ARR14(2)                                         --------->At4g35610            <---------ARR14(2)                                     --------->CCA1(2)       <-----------HVH21<---------YAB1                            --------->ARR14(2)      --------->bZIP60(1)            ------->GAMYB                --------->ARR11(3)    --------->At4g35610      <---------bZIP60(1)  ------->TEIL                           <---------ARR11(3)<---------ARR14(2) <---------At4g35610   <-----------------AGL1                     <---------ARR14(2)--------->ARR14(2) ---YAB1    --------->ARR14(2)    ----------->RAV1(1)     ------>NtERF2      <---------ZAT2    ------   tacagatgatgtcaaatccagatttgatgaatatggcaacagagagtatgaagaacatgaggcctgaagatttgaaacaagctgcggaacagcttaagca  7273700  Previous    Next  AGI:  At5g21990.1    Description:  tetratricopeptide repeat (TPR)-containing protein. similar to peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G48570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67415.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 7273172    to: 7276566    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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