Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <---------ARR14(3)                                                            --------->ARR11(3)                                          --------->AHL20(1)--------->ARR14(2)                                          <---------AHL20(1)<---------ARR14(2)                  -----                           <---------ANAC58                 <---------ARR11(3)  --------->AHL20(1)                           <---------ANAC46                 --------->ARR14(3)  <---------AHL20(1)                           <---------ANAC58<---------AHL20(2)          ----------->GT1<---------YAB1                      xxxxxxxxxxxxxxxx>smallRNA(i)     ----------->GT1<-------TEIL <---------AHL20(2)              <---------HSFB2a(2)         <---------ARR11(3)--------->GLK1(2)   <---------ARR11(3) <-   tgagcccatcttagttggagaaggccttggcttatgctgttctatatatttatcaaacagaaaatcttcaaattcgttacaatattttcttatagacgaa  7237800                                                       <---------AHL20(2)                                                   <---------AHL20(2)                                                  <---------AHL20(1)                                                  --------->AHL20(1)                                             --------->AHL20(2)                                           --------->AHL20(2)                                           <---------AHL20(2)                               --------->ZAT18   <---------AHL20(2)                               <---------ZAT18 --------->AHL20(2)                               --------->LBD16 <---------AHL20(2)                     <---------ICU4      --------->AHL20(2)                    <---------ATHB12     <---------AHL20(2)                  --------->WOX13(1)   --------->AHL20(2)        <---------GLK1(2) -->TEIL      <---------MYB46(3)       <---------AHL20(2) <---------YAB1 ----------GT1----------->GT1<---------LBD16 <---------AHL20(2)----------->ARR10   tttactcttcatttagttgttaatcaattcttccgcactatatatatatatatatattttataaatagattctcaacaaaactaaattttaaacccaaaa  7237900                             <----------ID1                             --------->ANAC46                     --------->AHL20(2)    <---------ICU4                 <---------AHL20(2)       --------->ICU4             <-----------GT1                 --------->AHL20(2)       <---------YAB1     --------->YAB1                --------->AHL20(2)      --------->YAB1   <---------AHL20(2)           <----------DOF2   --------->ANAC58            --------->AHL20(2)   --------->TOE2(3)           <---------DAG2    --------->ANAC58   <----------DOF2     <-----------GT1 <-------TEIL   tactatattctaactttatttaataaactaaacgccaaaatttcataattcttttgcaaaaaattagaatttaacgcctacataaatacatagaactcgt  7238000                                                                              --------->WRKY45                                                                              --------->WRKY12                                                                              --------->WRKY38(1)                                                                  <------------ATHB5                                                                  --------->YAB1                                                                 <---------ATHB51                                                             --------->MYB46(3)                   <--                                                       --------->DAG2         --------->ZAT18    <---                                                      ---------->DOF2       --------->At4g35610  ----                <-----------GT1                  <---------HSFB2a(2)      <------ZmHOX2a(1)      <---           --------->AHL20(2)                    --------->HSFB2a(2)<---------YAB1               <---         --------->AHL20(2)                   ------>ZmHOX2a(1)  --------->ICU4                  <---     --------->AHL20(2)                      --------->TOE2(3)   <---------ATHB12                <---    --------->AHL20(2)                      ----------------->AGL1<---------ICU4       <---------TOE2(3)   ttctaaataaaaaaaatataaccattcttcagaaaataaaactatttccttatagaaaaaggaaccaataatgagaggagttgactactaaggtcaattc  7238100                                        ----------->GT1                                       --------->DAG2                                      ---------->DOF2                                  <---------ANAC55(2)       --------->MYB46(3)     <-----------HVH21       <----------DOF2       ------>ZmHOX2a(2)      <-----------TGA1     <---------ARR11(3)      <------ZmHOX2a(2)      --------->bZIP60(1) --------->AHL20(1)     --------->PCF2          <---------TGA1a     <---------AHL20(1)     <---------ARR14(2)      --------->O2        --------->ARR11(3)     --------->ARR14(2)      <---------O2        <---------ARR11(3) -------SPL7                 --------->TGA1a----------->TBP    <-----------GT1 ------ANAC58                --------->ANAC46   --------->AHL20(2)<---------YAB1 ----->ANAC55(2)             ====================================bZIP_DOF                           *TSS ------ANAC55(1)             =========================================bZIP_DOF                    <-- ------ANAC55(2)             ====================bZIP_DOF  <----------DOF2                        <-- ------ANAC46        <-------TEIL --------->ANAC58 --------->ARR11(3)          <------------CBF<----- ------ANAC58   --------->AHL20(2)--------->ANAC58<---------CCA1(2)         ------------>CBF---------   cgtatgggatccactgaaaaaaatacatctctcgtcacgaaaaagtataaatatatctttccttttttctgattttagcccaattgttttttttgttctt  7238200                                ------->GAMYB                      <---------HSFB2a(2)                                --------->AtMYB61               --------->GLK1(2)                                <---------ALFIN1               <---------GLK1(2)                               --------->MYB46(3)            <---------ATHB12 -------ANAC58          --------->At4g35610                --------->MYB52(1) -------ANAC58          --------->ZAT2                  --------->ANAC46 -----DOF2              <---------ZAT2              --------->GLK1(1)<---------HSFB2a(2)        <---- ->ID1                  <---------At4g35610         <---------GLK1(1)--------->HSFB2a(2)<---------ALFIN1   tcgtcttcataaacaaaaccctctctagctgcaaccacacgatgaattcttccgatttccccaacgattctcgagaaaatcgtcgaatcaacaccgatgg  7238300                                  --------->ZAT2                                  <---------At4g35610                          <---------ANAC46                         --------->ATERF1(1)                                 --------->ALFIN1                  <---------AtLEC2--------->At4g35610                      <---------ANAC58              <----------DOF2     <---------ZAT2                           <---------ANAC46              <---------DAG2   <------ZmHOX2a(1)                           =========================bZIP_DOF            ------->TEIL------>NtERF2<-----------HVH21                     <---------ANAC58          <---------ZAT18<------NtERF2----------->HVH21 --------->YAB1     <---------TGA1a        <--     <------ZmHOX2a(2) --------->ETT(2)         <---------GLK1(1)          <---------bZIP60(2)  -----     =================================HOX2a_HOX2a    ------>ZmHOX2a(1)     <---------O2        ------ -----------------WRI1 <---------DEAR3(1)       --------->GLK1(1)          --------->O2  ---------->DOF2   agaagcgatcgatgcacttttcatggcgacggaggaagctgtgactcgtgatttcctatcagggtttcaaaatcaagacgtggagatggaagaaagaaaa  7238400      --------->At4g35610                   <---------YAB1      <---------At4g35610                   --------->ICU4  --------->DEAR3(1)                   <---------ANAC58 --------->ANAC58                      <---------ANAC46               --------->TOE1(2) --------->ANAC58                      <---------ANAC58              --------->At4g35610 -------ABI4(2)                  --------->ATHB12                    <---------ZAT2 ---->DAG2                      <---------YAB1                       <---------At4g35610 ---->DOF2    ----------->GT1  <---------GLK1(2)                  ---------->DOF2   agcaccgaagcagacgttgttaaaactggttcagattattggcgtgattatgaagttaagagaaattttaaagctgcgaaacattttgctcttgaattgc  7238500             <---------MYB46(3)           <---------GLK1(2)         <---------YAB1     ------>ZmHOX2a(2)     ===============================HOX2a_HOX2a    --------->GLK1(1)    ================================HOX2a_HOX2a    <------ZmHOX2a(2)   --------->AGP1   <---------AGP1   --------->ARR14(2)                                              --------->DAG2   <---------ARR14(2)                                             ---------->DOF2   --------->ARR11(3)                                           --------->CCA1(2)          --------->GLK1(2)   <---------ARR11(3)                                   XXXXXXXXXXXXXXXXXXXX>MIR774B  ---------->DOF2  <---------CCA1(2)          <------ZmHOX2a(1)----------->GT1----------->GT1     --------->DAG2  <---------At4g35610 --------->MYB52(1)  >>>>>>>>>TBF1 --------->CCA1(2)       ---------->DOF2 <----   attcagatctcaagattgttgaaaaaacggaggaagaggtagaagaagaagtaataagagatgaagataaaagtgagtttcgaaaagctaaagaatcgat  7238600                                              ------>ZmHOX2a(2)                                              ==============================HOX2a_HOX2a                                             ===============================HOX2a_HOX2a                                             --------->CCA1(2)                   --------->ZAT2                                             <------ZmHOX2a(2)                   <---------ZAT2                       --------->REM1(1)    <---------ARR14(2)                   --------->At4g35610                  ------>ZmHOX2a(2)         --------->ARR11(3)           <---------ANAC58                 <------ZmHOX2a(2)          <---------ARR11(3)           <---------ANAC58        <---                 --------->GLK1(1)          --------->ARR14(2)  <---------At4g35610              <---                --------->ARR11(3)          <---------AGP1     --------->HSFB2a(1)             ------                <---------ARR11(3)          --------->AGP1     <---------HSFB2a(1)       <---------ANAC58               --------->GLK1(1)          ----------->ARR10  ---------->DOF2     <---------At4g35610 --ZmHOX2a(2)  <---------GLK1(1) --------->CCA1(2)  --------->TOE1(2)------>ZmHOX2a(1)   <---------ANAC58   caagaagagaagacaagagatctctacaacaagtgatatggagatagatctgaatgtacgaaggaaagctccttcgcttgtggagctgagtgcgagagtt  7238700  Previous    Next  AGI:  At5g21900.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65254.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101) Range:  from: 7238200    to: 7240485    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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