Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->RAP2.3(1)                                                                                      <---------LBD16                                                                                      --------->ATERF1(1)                                                                                   --------->ATERF1(1)                                                                                <-----------RAV1(2)                                                                                --------->ATERF1(1)                                                                               <-------TEIL  <-------                                                                              --------->ALFIN1                                                                             <-------PIF5    <-------                                                                             ------->PIF5<------NtERF2                                                                            --------->At4g35610                                                                          <-----------RAV1(2)--------               --------->MYB55(2)                                        <---------ZAT2 --------->LBD16               <---------MYB46(3)                                      --------->ATERF1(1)  <------ZmHOX2a(1)             <---------MYB52(1)                                        <------NtERF2--------->DEAR3(1)             =============================================MYC_MYB     --------->LBD16------>NtERF2             <-------GAMYB<---------LBD16                            <---------DEAR3(1)--------->DEAR3(1)            <---------DEAR3(2)                                       --------->ALFIN1<---------ATERF1(1)            <------MYB83 =================================MYC_MYB   --------->ATERF1(1)<---------ANAC46            <---------MYB46(3)                                      <------NtERF2  --------->RAP2.3(1)           <---------DREB2C(2)                                      <---------LBD16<---------ABI4(2)           <---------DEAR3(1)                                      <---------RAP2.3(1)<------NtERF2   ---------->DOF2       -------->P                                <---------ORA47(2)<---------DEAR4(2) ------->GAMYB<---------MYB52(1)--------->ALFIN1<---------O2      <---------RAP2.3(2)<---------RAP2.3(1) -------->ANAC46         --------->MYB52(1)     <---------TGA1a   --------->ANAC46<---------ATERF1(1) ------>MYB52(1)        --------->MYB52(1)      --------->TGA1a   <---------RAP2.3(3)<---------ORA47(2) -----ATHB12<------MYB46(1) --------->LBD16     --------->O2      <---------DEAR3(1)<---------DEAR3(1)   caacggaaagaagtcggttgtttgactaaccggagtagggattgggatagacgtcggaatgtttttagacggcggagcaggtgcaggcgccggaggattc  7203700                                 --------->ANAC58                                 --------->ANAC58                        <------NtERF2                       <---------DEAR3(2)                      --------->DEAR3(1)                      <---------DEAR3(1)                      <---------At1g77200                     --------->ATERF1(1)                   --------->DEAR3(1)                  --------->ATERF1(1)                  <---------At4g35610         <---------MYB46(3)   --------->ZAT18         --------->MYB52(2)   <---------ZAT14         --------->MYB111(2)  <---------ZAT18         --------->MYB55(2)   --------->ZAT14        <---------MYB55(1)   --------->ALFIN1        <--------P--------->At4g35610        --------->At4g35610       <-------GAMYB<-----------HVH21        <---------At4g35610 <------ZmHOX2a(1)<------NtERF2  --------->ANAC46----------------->AGL1 --ARR14(2)      <---------ATERF1(1)         --------->ZAT2                             <---------MYB52(1) --GLK1(2)<-------GAMYB------>NtERF2  --------->ANAC58       ----------->GT1   <------ZmHOX2a(1)  --- ->ARR14(2)     <---------DEAR3(1)    --------->ANAC58    <------ZmHOX2a(1) <-----------RAV1(2)  <---   ttaggacgcggttgttgggcagcgtcggcgagtgcaggccacgaatgagctcccattacaggagcgtcaatagtctcaacaggagaagtcgttgttttcc  7203800                                                                             --------->TOE2(3)                                                                            <---------ICU4                                                                            --------->YAB1                                                                            <--------HAHB4                                                                           <---------ATHB12                                                                           <---------YAB1                                                                       --------->LBD16                                                                      --------->ANAC46                                                                     <---------LBD16                                                       <---------ATHB12------>NtERF2                                                     <---------At4g35610   --------->ICU4                                                 --------->ANAC46   <---------ATERF1(1)                         <---------LBD16       --------->At4g35610 --------->ARR14(2)                      <-----------HVH21     ========================HOX2a_HOX2a                    -- ------>ANAC46       --------->AtMYB61      <------ZmHOX2a(2)------>ZmHOX2a(1)                 ------ ------LBD16      <---------ALFIN1      <---------HSFB2a(2)------>ZmHOX2a(2)--------->ATHB12---------   acggagacttagtcccaataccaccttcacgggtgatcaattctcgatcatcggccactgatccttcagtctccgccatcattagaaacttggaaagata  7203900                                                                       --------->ANAC58                                                            --------->At4g35610                                                          <-----------RAV1(2)                                                         ================================HOX2a_HOX2a                                                         <------ZmHOX2a(2)            --------->ANAC58                   =================HOX2a_HOX2a     --------->YAB1                            <------ZmHOX2a(1)       --------->ANAC46 ------->YAB1                  =======================HOX2a_HOX2a      --------->ANAC58 --->CCA1(2)--------->ANAC46   ===============================HOX2a_HOX2a -->GT1     --------->ANAC58   <------ZmHOX2a(2)       <------ZmHOX2a(1)          <------ZmHOX2a(1) <   aacagaatcaaaacaaggaagcgattcaattggatcaaaaacagaacgaggattgaaggatcagatggagaagacgcaatgtgaggaagagaggttgaag  7204000                                     <----------DOF2                                   --------------->AGL15                                   ==================================================================                                <---------ALFIN1                               <------NtERF2                              ------>NtERF2                             <---------bZIP60(1)                             --------->bZIP60(1)          --------->ALFIN1  --------->ATERF1(1)                                   <-----------GT1          <---------ANAC58  <------NtERF2                             ----------->GT1          <---------ANAC58 <---------ATERF1(1)             <---------------------WRI1        --------->ALFIN1  <---------DEAR3(1)     <---------KAN4(2) --------->MYB52(1)         -------   <------NtERF2       <---------AtMYB61 <---------TOE2(3)<------ZmHOX2a(1)  ----------->GT1 *TSS ------ZmHOX2a(1)      <-----------RAV1(1)     <------ZmHOX2a(1) <---------MYB52(2)  ------->GAMYB  <   aaggaggcaagtgtgtgtgtgtgttttggtggcgacactctttaagggaggaataagcgaggatgaaacaaacagtgaaacgtataaccccaaaaaccct  7204100          <----------DOF2                                                                       -----        ------>ZmHOX2a(1)                ------------>CBF                                      ------   <----------DOF2                <---------AHL20(2)                                         --------  <---------ANAC58               <---------------AGL15  ---------->ID1                      <-------TEIL  <---------ANAC58               --------------->AGL15  <-----------GT1                --------->YAB1 ================================================MADS_MADS ------>ZmHOX2a(1)           --------->AHL20(2) -->TOE2(3)   <-----------TBP <---------AHL20(2)       <-----------GT1              --------->YAB1 -----------GT1        ------->TEIL<-----------TBP------>ZmHOX2a(1)              --------->YAB1<-----   agttactttcctctttttttatatgtatatgtttattttatatagcaatttcctatttttcctatttgaaatttgacaaaaaataagaataatattcatg  7204200                                                                                <---------AHL20(2)                        --------->ARR14(2)                                      --------->AHL20(2)                        <---------ARR11(3)                            <---------AHL20(2)    <---------AHL20(2)  --------->ARR11(3)                           <---------AHL20(2)    --------->AHL20(2)  <---------ARR14(2)                           --------->AHL20(1) ---->ATHB12           --------->RVE1(1)                             <---------AHL20(1) --->ICU4              --------->GLK1(1)               <---------AHL20(2)   <----------DOF2 ->YAB1                --------->CCA1(1)<----------DOF2--------->AHL20(2)<-----------GT1 ----YAB1     <---------ZAT6------>ZmHOX2a(1)  ------>ZmHOX2a(1)     --------->AHL20(2)   atttgtttaattactagtattacaaatatcctctaatctggtctttatccttcgtaattaaaaacattcaatttatttctttttaatttttgttttgaga  7204300                                      <----------DOF2                                      <---------DAG2                                   <-----------GT1                                  --------->AHL20(2)                                     --------->TOE1(3)                        --------->AHL20(2)                                               --------->TOE2(3)                        <---------AHL20(2)                                        <---------AHL20(2)                       <---------AHL20(2)                             <-----------GT1 <-----------GT1                       --------->AHL20(2)                          --------->YAB1<---------AHL20(2)              ----------->GT1--------->AHL20(2)         <---------MYB52(1)       --------->AHL20(2)        <---------TOE2(3)    <---------AHL20(2)        --------->TOE2(3)      --------->AHL20(2)   aaacatcatttatgtagggttttaaaaaaatttaaattaactttataaacttattttcgttagacctatttataacgcgtttatttattaaccttagttt  7204400                                                                                                    <                                                                                                    <                                                                                         <------ZmHOX2a(1)                                                                                       <---------TOE1(3)                                                                                       <---------TOE2(3)                                                                                    <---------MYB52(2)                                                                ================================HOX2a_HOX2a                                                         <---------TOE2(3)     <-----------GT1  -----   ------>ZmHOX2a(1)                                <----------DOF2      <----------DOF2--------->ICU4  --------->TOE2(3)                              ---------->ID1 ------>ZmHOX2a(2)--------->REM1(1)  -  --------------->AGL15                       <---------------AtSPL8--------->MYB46(3)--------->MYB52(1) ----------------->AGL2                       --------------->AtSPL8<------------MYB.PH3(2)     <----   atgtccttaaatagatgtgttagaatttgtgtagcaattctaagttattttgtacttttaatgtgatctaacaaacttttgttacaactaaggattagta  7204500                                                                                         <---------ICU4                                                                                        --------->ICU4                                                                                       <---------AHL20(1)                                                                                       <---------AHL20(2)                                                                                      --------->YAB1                                                                                     <---------YAB1                                                                                    --------->AHL20(2)                                                                                    --------->AHL20(1)                                                                                    <---------AHL20(2)    ---------->DOF2                                                                --------->YAB1 ------MYB46(1)                                                                    <---------ICU4 ------MYB83                                                                      <---------YAB1 ---->MYB111(1)                              <---------YAB1  --------->AHL20(2)<---------AHL20(2) ---------->GT1                             <----------DOF2  <---------AHL20(2)--------->AHL20(2) -----MYB46(3)   <---------ARR11(3)--------->YAB1    <---------AHL20(2)       --------->AHL20(2) <---   gttggtaaaagagaacgaagataactagttatcgctcttataatctctttattgttttattgtttaattcgtttaagttatttaattataatatttagtc  7204600  Previous    Next  AGI:  At5g21160.1    Description:  La domain-containing protein / proline-rich family protein. similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G35890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67402.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Protein of unknown function DM15 (InterPro:IPR006607); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630) Range:  from: 7198744    to: 7204093    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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