Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->At4g35610                                                             <---------At4g35610                                                            ------->TEIL     <---------ZAT18                                  --------->ARR14(2)     --------->ZAT14                                  <---------ARR14(2) ----------HVH21                                 --------->ANAC58                                   - -------bZIP60(1)               -------->P       --------->ANAC58                              ------ >ETT(2)                 <---------AtMYB61       --------->ANAC46                           <------ZmHOX2a(2)   gtgtcagagctctcaacctcgagagtgatggtcttaccagtgagtgttttcacgaaaatttgcatctgcgaaggaagagagcaagtagtaatcgatcagc  6974500                                                         <<<<<<<ZML2                                                      --------->HSFC1(1)                                                      <---------HSFB2a(2)                                                      <---------HSFC1(1)        ------>MYB46(1)        --------->YAB1         --------->HSFB2a(2)        ------>MYB83     --------->ANAC58            ------>ZmHOX2a(2)                       --------      <---------MYB59    --------->ANAC58          --------->ARR11(3)                        --------   <-----------GT1   --------->YAB1                --------->AGP1                       XXXXXXXXXXXXX -------->YAB1      <---------YAB1           <---------ZAT14      --------->TOE2(3)    <XXXXXXXXXXXXX --->At4g35610    ----------->GT1            --------->ZAT14--------->TOE2(3)   --------->ZAT18     <   aaaaataaccaaactagaaactgtgataagaaatcaaaacaaaccagagaactgatctagaaccctaatcttatatgagaattgcacaaacaaacaagaa  6974600                                                                                   ------>ZmHOX2a(1)                                                                                  --------->TOE2(3)        <-----------GT1                                                 ==================HOX2a_HOX2a    --------->ARR11(3)        --------->ZAT6                            ------>ZmHOX2a(2)    <---------ARR11(3)       <------ZmHOX2a(2)                         <------ZmHOX2a(2) <---------TOE2(3)          --------->ARR11(3)                         ===================HOX2a_HOX2a ->ANAC58                   <---------ARR11(3)                        --------->ARR11(3) ->ANAC58                  --------->YAB1         --------->MYB52(1)  <---------ARR11(3) XXXXXXX>MIR837-3P      ---------->DOF2          ----------->HVH21    --------->AGP1 XXXXXXXMIR837-5P --------->YAB1               ----------->RAV1(2)   --------->GLK1(1)      --------- -----------GT1  <---------YAB1        --------->YAB1                <---------GLK1(1)   --------->YAB1   attgacgatattacttcttatcaaaacaaagatcactacaaacataaaaacctgacgaactacgaattgagagatcttagtattcctaaaatcataaaat  6974700                                                         <---------LBD16                                                       <-----------GT1                                                    <---------ICU4                                                    --------->YAB1                                                    <--------ATHB1                                                    --------->ATHB51                           ---------->DOF2          --------->AHL20(2)                       <---------HSFB2a(2)         <---------ATHB51         =========================                      ----------->GT1              <---------ATHB12 --------->YAB1                    --------->GLK1(2)     --------->ANAC58         <---------ATHB12               ---------->DOF2            --------->ANAC58       --------->WOX13(1)       <---------MYB59 >AHL20(2) --------->WOX13(1)           --------->MYB52(1) --------->LBD16  <------ZmHOX2a(1)       <   cgagataactcataaatcaaagaatcgagaaaagcatagatgaaacggaatcaataatttcccgattcaatcatccaaggacatcatacagacctaaacg  6974800               --------->AHL20(2)         --------->ANAC58                                   --------->GLK1(2)         --------->ANAC58                                  <---------GLK1(2)  <------ZmHOX2a(2)          --------->YAB1        ---------->DOF2 ========HOX2a_HOX2a      --------->YAB1       --------->TOE2(3)                                    < ---------GLK1(1)   ----------->GT1      <---------------AtSPL8--------->TOE1(2)      <------ZmHOX2a(2)   agagatcagacgcgaaatcaaatagaaataacaataagagaaacaggtaccttgaaagagagaatcgttcgaagagatgtgaagagcgatctaggttttt  6974900                                                                                                    -                                 --------->At4g35610                                               --                                 --------->ZAT14                                                   <-                                 <---------ZAT14                                                   <-                             --------->YAB1                                                        --   <---------DAG2          --------->GLK1(2)    *TSS                                           <-----   <----------DOF2 --------->At4g35610  --------->ARR11(3)                  --------->YAB1     ------ -----------GT1    --------->CCA1(2)    <---------ARR11(3)              <---------AHL20(2)     <-----   ttttacttttttctgtgagagagatgaagaatcagagcagaagataatacttcgctagaaaatagccttcttatataatggtgaccaaaaccgagtttta  6975000            --------->DAG2           ---------->DOF2  <---------WOX13(1)                           --------->AHL20(2) <------------CBF                              <---------AHL20(2) -------->ATHB12                           <---------AHL20(2) ------->AHL20(2)                         --------->AHL20(2)                 <---------YAB1 --------AHL20(2)                        <---------AHL20(2)               <---------------AGL15 --------AHL20(1)                    <---------AHL20(2)                   --------------->AGL15 ------->AHL20(1)                    --------->AHL20(2)                  <---------ANAC46      ------ ----AHL20(2)      ---------->DOF2  <---------AHL20(2)                   <---------ANAC58     <------ --->AHL20(2)     ---------->DOF2--------->AHL20(2)          --------->At4g35610  <---------ZAT18 ----YAB1 ---------->DOF2      --------->TOE2(3)<---------AHL20(2)       <---------ANAC58     -------   attaattggcccaaaaggcccaaaggcccaaaacattatttattttaaatttttttgaacatcggctaaatagttgcttattagtgcaaatgtcgagata  6975100                               <---------YAB1                               --------->ICU4                           --------->AHL20(2)      --------->ANAC46     --------->AHL20(1)  <---------YAB1      --------->ANAC58     <---------AHL20(2)<-----------GT1      --------->ANAC58     <---------AHL20(1)--------->YAB1 --->CCA1(2)      <---------ARR14(2)        <---------YAB1             <---------AHL20(2)     ------- ---ARR11(3)      --------->ARR14(2)      <---------ICU4              --------->AHL20(2)    --------- -->ARR11(3)     <---------GLK1(1)<---------YAB1           ---------->DOF2               --------->YAB1   tagttgacaagctacttagaaatctgcaatataatgcttattagttattacaatttgaagccaaagagactataaaatgaaacattgagaacaataacaa  6975200                  --------->TOE2(3)                 <---------ICU4                                           ------->GAMYB                 --------->YAB1                                          --------->MYB46(3)                <---------ATHB12                                      --------->MYB46(3)                --------->ICU4                                      --------->ANAC46    ----------->GT1                                               --------->ANAC58                  -  ---------->DOF2--------->ATHB12                                 --------->ANAC58    --------->AHL20(2) -->MYB46(3)  ------>MYB46(1)                                   ---------->DOF2       <---------AHL20(2) >YAB1        ------>MYB83                  ---------->DOF2<-----------GT1<---------ALFIN1        ---   ctcataaagaaaaaccaaatcattagaagaaacaaactcaaaatgctaaaggaactcgaaataacaaaacgcacaaccacatttttaaaaaaatgaacaa  6975300                                                                              <---------ANAC46                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                      --------->HSFB2a(1)                                                                      <---------HSFB2a(1)                                 <---------ALFIN1                  <------ZmHOX2a(1)          --------->GLK1(2)  --------->ANAC58                    <---------TOE2(3)    --------->MYB52(1)       --------->ANAC58                    --------->ANAC58       <---------ARR11(3) ------>TEIL             --------->ANAC46                        --------->ANAC58--------->REM1(1) ------>YAB1      <---------ICU4<---------ZAT18          <---------AtLEC2  <---------RAP2.6(2)   tgaaactaagagaagcttaattagttcccccaagcacacccttaagcttcttaacttctgcatcgctaaggaacgttgtggcttcaacaagttctgaagg  6975400  Previous    Next  AGI:  At5g20620.1    Description:  UBQ4 (ubiquitin 4); protein binding. similar to UBQ10 (POLYUBIQUITIN 10), protein binding [Arabidopsis thaliana] (TAIR:AT4G05320.4); similar to UBQ10 (POLYUBIQUITIN 10), protein binding [Arabidopsis thaliana] (TAIR:AT4G05320.2); similar to UBQ10 (POLYUBIQUITIN 10) [Arabidopsis thaliana] (TAIR:AT4G05320.6); similar to hexaubiquitin protein [Helianthus annuus] (GB:CAA40324.1); similar to polyubiquitin [Petroselinum crispum] (GB:CAA45621.1); similar to polyubiquitin [Thlaspi caerulescens] (GB:AAY86773.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 6973073    to: 6974948    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g20630.1    Description:  GLP3 (GERMIN-LIKE PROTEIN 3); manganese ion binding / metal ion binding / nutrient reservoir. Identical to Germin-like protein subfamily 3 member 3 precursor (GER3) [Arabidopsis Thaliana] (GB:P94072;GB:P94028); similar to GLP1 (GERMIN-LIKE PROTEIN 1), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT1G72610.1); similar to Germin-like protein 1 precursor (GB:P45854); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Germin; (InterPro:IPR001929); contains InterPro domain Cupin, RmlC-type (InterPro Range:  from: 6975106    to: 6975995    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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