Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             ------>ZmHOX2a(2)                                                                                           ==========                                                                                          <---------At4g35610                 --------->CCA1(2)                                                        --------->At4g35610  --------->ANAC46                                                                       <---------ARR11(3)  --------->ANAC58                                                                   <---------ANAC58  --------->bZIP60(2)                                                    ---------->DOF2 <---------AGP1  --------->ANAC58 <---------YAB1                             --------->CCA1(2)      <---------ANAC58 ----->ARR14(2) <---------ARR14(2)                           --------->ARR14(2)  <----------DOF2 ------ARR14(2) --------->ARR14(2)                <------NtERF2<-------TEIL   --------->RAP2.6(2) >MYB52(1)------>ZmHOX2a(1)              <---------GLK1(1)   <---------ARR14(2)  <---------DAG2   ttccaagtcatcctcgtggatacgatagagaacacaaacatcgatatcaggccgaaggaaacagatacagtcgctcaaagccgcttttcttgatctgaga  6902900                                  <-----------GT1                               --------->ANAC55(1)                               <---------ANAC55(2)                             <---------ALFIN1                    <---------ARR11(3)                    <---------ARR14(2)                    --------->ARR11(3)                    --------->ARR14(2)                   <---------GLK1(1)                   --------->GLK1(1)                   <---------CCA1(2)                   <---------RVE1(1)                          <---------ICU4                  --------->ARR14(2)                         <---------YAB1                  <---------ARR14(2)                       --------->YAB1      ------>ZmHOX2a(1)             <------ZmHOX2a(1) --------->ANAC46 ------->GAMYB--------->ICU4 <------ZmHOX2a(2)         ---------->DOF2   ----------->RAV1(1) --------->MYB46(3)          --------->ARR14(2) ===================HOX2a_HOX2a--------->ANAC55(2) --------->ANAC55(2)     <---------ARR14(2)   cgaagcctttggaaaggacggatatcttccaacacataaccattctctaacagacgtattgtcatcattccatcttcgatcctcatgtattccacaggct  6903000                       ---------->DOF2     --------->LBD16                 --------->ARR11(3)      <---------LBD16             --------->At4g35610        --------->MYB52(1)          --------->At4g35610          <---------ARR14(2)          <---------ZAT2         ----------->GT1                 ---------->DOF2    <----------DOF2          --------->ZAT2     ---------->DOF2                    <---------WRKY45  ------->TEIL    ------->TEIL <---------ARR11(3)    --------->ARR14(2)  <---------MYB52(1)   <---------ZAT14------   tccatgtacccgagcagaagaactcgaaagctaaagagtaagaaccggaacattgttatccattagtcaaagtaatccagtctgtactttggcatttcaa  6903100                                                  <---------ZAT2                                                  --------->At4g35610                              ----------->GT1     <---------At4g35610                              --                  ---------->DOF2                 --------->ZAT2                                  ---                --------->HSFB2a(2)     <----------DOF2                --------->AHL20(2)      ====== --->WOX13(1)   <---------HSFB2a(2)  <-----------GT1  <-----------RAV1(1)                      <-----   tccaacaatttccaacttctcaaagtactgaatggtttataactttaagttcagctctgtggctaacttgcacttaaatgagaacagaagaaaattgata  6903200                                                                                                  ---                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                                            ---------               --------->ANAC58                                                             -------->P          ------->TEIL                                                                   --------->MYB46(3)        <---------ZAT18                                                                  <---------ATHB12        --------->ZAT18                                                       <----------DOF2--------     --------->GLK1(1)                                 <----------DOF2     <-----------GT1 --------->WOX13(1) ------->DAG2  --------->ANAC58        <---------------AGL15            --------->YAB1  --------->ANAC58 ------->DOF2  --------->ANAC46        --------------->AGL15          <-----------TBP------------>CBF ======================================================MADS_MADS    --------->AHL20(2)  --------->ANAC58 ----------AGL15        <------ZmHOX2a(2)  ----------->GT1          <---------AHL20(2) --------->WOX13(1)   taaagggaaatgcacttacgacatggatcaaatggatgcttcaaattgtagaaacctcttttcttcatatttttttataacttttgggccaatcaaccaa  6903300                            ----------->RAV1(1)                         ------->GAMYB                     --------->REM1(1)                   ------>ZmHOX2a(1) <------------CBF --------->TOE1(2) -------->RAV1(1)------>ZmHOX2a(2) ----->MYB46(3) <------ZmHOX2a(2) ->MYB46(1)    <---------ARR14(3)                                                                   < ->MYB83       <---------ARR11(3)                                                          <---------At4g35610 >GAMYB        --------->ARR11(3)                                   <---------YAB1      <------ZmHOX2a(2) -->AtMYB61    <---------ARR14(2)                        --------->At4g35610            ============= --MYB55(2)    --------->ARR14(2)                    <-----------HVH21   ------------>CBF  --------->At4g35610 --MYB52(2)    --------->ARR14(3)        --------->MYB46(3)        <-----------TBP ---------->DOF2 <- >ANAC58      --------->GLK1(1)          <---------MYB52(2)        --------->AHL20(2)  <---------ARR11(3) >ANAC58      --------->HSFB2a(1)      <-----------GT1   <---------At4g35610 <---------ATHB12   ----- ->MYB46(3)  ----------->ARR10      --------->YAB1---------->DOF2  <---------AHL20(2)  --------->ARR11(3)   caacattgttatgcgaagatcctacaacggcaacataagtataacaaaccccaaaagtcagatgcctatttttatagcaataactcaaagatcagcagaa  6903400                         <---------------AGL15             --------->ZAT18             <---------ZAT14           <---------ZAT14           --------->ZAT14      <---------TOE2(3)      <---------ZAT14    --------------->AGL15                    <---------WOX13(1)      --------->ZAT14    <----------DOF2                         <------------CBF ------ZmHOX2a(1) <---------ZAT14                               --------->ATHB12 ======HOX2a_HOX2a--------->ZAT14----------->GT1               <---------YAB1       <-------TEIL ---------ID1--------->ZAT14--------->YAB1                <----------DOF2 <---------GLK1(1)  <------- ----->DOF2<---------ZAT18 --------->ICU4              <---------YAB1     --------->GLK1(1) <-------TEIL   aaggacagaacagtgtgctctgctctgctattatgaggtaacttagttttcagtcttatgcttttttgattgagggaaatgctaagtgcatatgtgcatg  6903500                      --------->ATHB51                     <---------YAB1                   --------->YAB1 <---------ARR11(3)         <------MYB83--------->ICU4                                                            <-----         ----------->GT1          --------->ARR11(3)                                         --------        --------->MYB59<------------CBF                                             --------->ANAC46 --------->YAB1 ----------->GT1  <---------CCA1(2)                                  --------->ANAC58 --AtLEC2<------MYB46(1)<---------WOX13(1)                                          --------->ANAC58   taatcaaaatttggttaagagttataattgatgctatatctttccaaatcgcttcacatttcgaagtctaatcttacatacaaaacaaggaacagagaac  6903600                                     --------->TGA1a                                     --------->O2                                     =========================bZIP_DOF                                   <---------ALFIN1                               ------>MYB83                               ------>MYB46(1)                             ------->GAMYB                             <---------MYB59       ---------->DOF2                             --------->AtMYB61  --------->ANAC58           --------->GLK1(2)                             ==================MYC_MYB                  <---------TOE2(3)                            --------->MYB46(3)  --------->ANAC58    --------->TOE2(3)                           --------->ANAC58     --------->ANAC46    --------->TOE1(3)    <---------ARR14(2)     --------->ANAC58  <-------TEIL   <---------CCA1(2)     --------->DAG2    --------->ARR14(2) --------->ANAC46     --------->CCA1(2)     <---------TOE2(2)           ------- ----GLK1(1)           --------->ANAC58    <---------ARR14(2)     <---------TOE1(2)   --------->ZAT18 ->ZAT14               --------->ANAC58    --------->ARR14(2)<-----------ARR10   ---------->DOF2   <-   tctgcatatatgaaaacttgatcatacacaaccaaacccacatcggatacacgaaaagactcaaatcttacgttaagaatcgaaaaagttcacaaattgt  6903700                                          --------->LBD16                 --------->AHL20(1)                                          --------->HSFB2a(2)             <---------AHL20(1)                                          ------>ZmHOX2a(1)              --------->AHL20(2)                                          <---------HSFB2a(2)          --------->AHL20(2)              ----------->GT1            <---------LBD16             --------->AHL20(2)     ---------             --------->MYB59            ----------->RAV1(2)    ----------->GT1         <-----------HVH21             <---------TOE1(3)    <---------AHL20(2)    --------->HSFB2a(2) --------->AHL20(1)             <---------TOE2(3)   <---------AHL20(1)     <---------HSFB2a(2) <---------AHL20(1)  ----- ---->GT1<----------DOF2         <---------ARR11(3)    ----------------->AGL1    <---------AHL20(2) --------TOE2(3)                <---------CCA1(2)      <-----------------AGL1   --------->AHL20(2)   taacatttgtgtttttaggtaaaaaacaaaacccatatattttcctggaacagagagtccagaagaggcaaaaaaatatatattaaatcggtcatcacta  6903800  Previous    Next  AGI:  At5g20420.1    Description:  CHR42 (chromatin remodeling 42); ATP binding / DNA binding / helicase. similar to CHR38 (chromatin remodeling 38), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G42670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41437.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75315.1); similar to SNF2 domain-containing protein [Olimarabidopsis pumila] (GB:ABA18099.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contain Range:  from: 6899017    to: 6903268    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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