Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               ------>ZmHOX2a(2)                            <---------GLK1(1)                            <------ZmHOX2a(2)                            --------->GLK1(1)                        <---------TOE2(3)                           <---------ARR11(3)                       --------->MYB52(1)                           --------->ARR14(2)                       <---------DOF5.7(2)                           <---------ARR14(2)               <------ZmHOX2a(2)                           --------->ARR11(3)              --------->ARR11(3)                           --------->ARR14(3)              <-----------ARR10                           <---------ARR14(3)          --------->MYB52(1)                          --------->RVE1(1) --------->LBD16<---------ARR11(3)                       ---------->DOF2      ------>NtERF2  --------->ARR14(2)                ------>ZmHOX2a(1)                    <---------At4g35610    --------->DEAR3(1)------>ZmHOX2a(2)     ------->GAMYB             <---------GLK1(2)   ------>ZmHOX2a(1) --------->ZAT6 --------->DOF5.7(2)       ---------             --------->ARR14(2)  ===================================HOX2a_HOX2a   --------->ANAC46 -------->HVH21     --------->At4g35610    --------->ANAC46<---------ARR14(2)     --------->ANAC58 ---->CCA1(2)<---------ARR14(2)  ==================================HOX2a_HOX2a    --------->ANAC58 <-   acgacggtttagccaaattcgctgctaaagatctcctaaacctctccgcctcaacactaccgatcttcgctaacgaattcatcaacgccaatttcctcag  6887100                     --------->YAB1            --------->WRKY38(1)                              <----               --------->TOE1(3)               --------->WRKY12                                 -----               --------->TOE2(3)               ----------->HVH21                               <-----         --------->TOE2(3)            <---------MYB46(3)                                       ------      ----------->RAV1(1)  <-----------GT1 <---------YAB1                  --------->GLK1(1)  <------ >TOE2(3)--------->TOE1(3)--------->YAB1 <-----------GT1    --------->GLK1(2)    <---------TOE1(2)  - ------TEIL   --------->ZAT6      <---------YAB1<---------WRKY18(1)        <---------GLK1(1) <-------   attcaatccaacattaaccctaatcgtattatcaccacgattgttacgcttgaccgtcgaagaagctagggttttggatttctcatgttctaatcggcgg  6887200                                      <---------ZAT18                                  <------ZmHOX2a(1)                                       <------MYB46(1)        <---------LBD16         <---------TOE2(2)                                         <------MYB83       --------->MYB52(1)       <---------TOE1(2)                         ------------>MYB.PH3(1)     --------->ZAT18          <---------SPL7                              --------->MYB52(1)    -----     <---------ABI4(2)       <---------ANAC46                             ------------>AtMYB77  <---- --NtERF2                 <---------ANAC58                               <---------ARR14(2)    <----- ---->At5g28300           <---------ANAC58                               --------->ARR14(2)    <----- ----MYB46(3)             <---------ANAC46                      <---------ICU4            <---------MYB46(3) ----->GT1              --------->ALFIN1                        --------->ATHB12         <---------AtMYB61 ---DEAR3(1)---------->DOF2<-----------HVH21    <----------DOF2--------->ICU4  --------->ARR14(2) --------->DOF2    <-----------RAV1(2)--------->ZAT18          <---------YAB1  <---------ARR14(2) --ABI4(1)--------->LBD16<-------TEIL <---------ZAT14        <---------At4g35610    <---------LBD16   tgaaaagagcaccggaaagaaccagggtgcgtcgtaggagagcacaaacactttctcttggtctgatgattagaagaaacggttacgacggatggtttcg  6887300                                                                           --------->YAB1                                                                          <---------YAB1                                                                          --------->ICU4        --------->LBD16                                                 --------->YAB1       --------->LBD16                                                 --------->ICU4      <---------ANAC46                                               <XXXXXXXXXXXXXXXXXXXXMIR414      <---------HSFB2a(2)                                          <---------TOE2(3)      <---------LBD16                                             <---------DOF5.7(2)     <---------ANAC46      --------->HSFB2a(2)                                        --------->WRKY12      <---------MYB46(3)     <---------LBD16                                             --------->WRKY38(1)  <---------WOX13(1)  <---------ANAC58                                               --------->WRKY45     <---------YAB1  <---------ANAC58                                               ----------->HVH21  --------->ATHB12 <---------HSFB2a(1)                                            --------->DOF5.7(2)<---------YAB1 --------->HSFC1(2)                                           ------>ZmHOX2a(2)    --------->ICU4 <---------HSFC1(2)                                         --------->ARR11(3)   --------->YAB1 --------->HSFB2a(1)                           <---------AtLEC2<-------GAMYB    <---------YAB1 ---->HSFB2a(2)                           <-----------RAV1(1)<------ZmHOX2a(2)  --------->ICU4 -----HSFB2a(2)                       --------->GLK1(2)     <---------ARR11(3)--------->YAB1 ----LBD16                           <---------GLK1(2)     <---------GLK1(1) --------->ICU4 ----ANAC46                        <---------TOE2(3)       --------->GLK1(1) <---------YAB1 <--------   ggatgcttccgggagaataaaacttcaatcggagattgagattcttgttgcaaggagacggagatcgttgacgatgatgatgatgatgattgttgtgtaa  6887400                                                     <------NtERF2                                                    ------>NtERF2                                                    <---------RAP2.6(3)                                                   --------->ANAC46                                                   >>>>>>>>>AtERF-1                                                   >>>>>>>>>AtERF-2                                                   --------->DEAR3(1)                                                   >>>>>>>>>AtERF-5                                                   >>>>>>>>>AtERF-4                                                   >>>>>>>>>AtERF-3                                                   --------->RAP2.3(2)                                                   --------->RAP2.6(2)                                                   --------->RAP2.3(3)                                                  --------->MYB46(3)                                                  --------->ERF1                                                  --------->ATERF1(1)                                                 <---------ATERF1(1)                                            <---------HSFB2a(2)                                            --------->HSFB2a(2)                                        ------>ZmHOX2a(2)                               ------>ZmHOX2a(2)--------->ARR14(2)                   <---------ANAC46   <---------ARR11(3)         --------->ZAT14                 <------ZmHOX2a(1) <----------DOF2--------->RAP2.3(1)                 =====================HOX2a_HOX2a--------->At4g35610    --------->REM1(2)   <---------AGP1--------->ARR11(3)         <---------ZAT14              <------ -ANAC46         ==============================HOX2a_HOX2a       <---------ZAT18<------ZmHOX2a(2)   tctctgtgaagaagagagaggacgtagaactgatcggcttgatcttccagtagccgccatttctctctgcacaagtgaagagatcgatgagagttttaag  6887500                                                <-------GAMYB                                               <---------MYB46(3)                                --------->AHL20(2)                                <---------AHL20(2)                               --------->AHL20(2)                           <---------AHL20(2)  --------->MYB52(2)                           --------->AHL20(2)<---------MYB52(1)        <----------DOF2                     <---------ANAC55(1)   <---------YAB1          --------->GLK1(2)             <---                     <---------ANAC46--------->MYB59               <---------ARR14(2)     <----------    ---------->ID1   --------->ANAC55(2)--------->ARR14(2)  <-------TEIL                <------------  <-----------RAV1(1)<---------ANAC55(2)<---------ARR14(2)<---------ARR14(2)           <------------- -----GT1       <---------ZAT6 <---------AHL20(2)         --------->ARR14(2)           <-------------   cgttttgttgttttttttgtgttaagtgtttaattaaattcggttctgtttgttgaagaagattcagcgattccttttgtttcgcatcatctatttatgg  6887600                               --------->GLK1(2)                               --------->ARR14(2)                            <---------ANAC58                            <---------ANAC58                        --------->ATERF1(1)                        <-------GAMYB                       <---------DEAR3(2)                       <---------MYB46(3)                       --------->MYB55(2)                      <---------DEAR3(1)                ------>ZmHOX2a(2)               <---------GLK1(1)  --------->ARR11(3)  <---------ANAC46  --------->ARR14(2)  <---------ANAC58  <---------ARR11(3)  <---------ANAC58          --------->GLK1(2)   ----------->GT1  <---------ARR14(2)  <---------DREB2C(2)       <---------ARR14(2)<---------At4g35610             --- <---------CCA1(2)  ------------>AtMYB77        --------->ARR14(2)--------->At4g35610   <----------DOF2 ------ANAC46  <------ZmHOX2a(2)           <-----------HVH21      ----------->RAV1(2)   <---------DAG2 -TBP          --------->GLK1(1)       <---------LBD16        <-----------HVH21      ---------->ID1 ---AGL15     --------->ARR11(3) <---------ANAC58         <---------AHL20(2)         <-----------GT1 ----AGL3     <---------ARR11(3) <---------ANAC58        --------->AHL20(2)         <-----------GT1-- ----AGL2    <---------GLK1(1) <---------ARR14(2)   <-----------HVH21      ----------->GT1     ------   agtatatctacgtagagatctctggcggttgcgaatcgtgtccagggtcaaatctgtcatttaatgtcacctgtaaaatgttattttttcctttttccta  6887700           ------->TEIL           <-----------------AGL1       --------------->AtSPL8       <---------TOE2(3)       <---------------AtSPL8                             <----------DOF2       <---------------AtSPL3                      --------->ANAC46     <---------AHL20(2)                    ------>ZmHOX2a(1)                                 -------- ------>At4g35610      ----------->GT1--------->WOX13(1) <---------DAG2         --------->AHL20(2) ------->YAB1   <------------CBF    ------------>CBF  <---------ALFIN1 --------->ZAT6   ------->TEIL >ZmHOX2a(1) <---------MYB59   --------->YAB1------------>CBF<-----------GT1    <---------AHL20(2)   agcagaattaatgtaccgaattggaaggaaaaatcagagtcaatcctttcaatactccaccttttacccattaacactgagtttaatttgcatctatgca  6887800                                                                   <-----------GT1                                    <----------DOF2     ------->GAMYB                <---------ZAT18   <----------DOF2    ----------->RAV1(1)                <---------ZAT14 <---------ZAT14     --------->ANAC46        <----------DOF2                --------->ZAT14 --------->ZAT14<----------DOF2 --------->AHL20(1)            --------     <------ZmHOX2a(1)      --------->ZAT6    <---------ANAC58 <---------AHL20(2) <-----------GT1 ->AtLEC2--------->DAG2  <-----------GT1      <---------ANAC58 --------->AHL20(2)<-----------GT1 ----   aaaaccaggataaggcagtgaacaaaattaccactgctctttgtttttgctttcacaacagaaaattttttaccatttcttttttacctatacaataaca  6887900                                                                                               <-----                                                                                     --------->MYB46(3)                                                                                     <---------ATHB12                                                                                    ------>MYB46(1) -                                                                                    -------->P-------                                                                       <---------ANAC58       -------                                                         ----------->RAV1(2)        ------>MYB83   <- ->YAB1                              <---------YAB1   ------->TEIL     <---------ANAC46      <------- ------>DOF2              --------->YAB1       <----------DOF2         <---------ANAC58      --------   aaagtttctccatgtttttgtgcctcaataacaaaacttatgagtcttcctttctgaacgtctgaggctcactgcttgcaaatgccaaccatacaaccgt  6888000  Previous    Next  AGI:  At5g20370.1    Description:  serine-rich protein-related. similar to serine-rich protein-related [Arabidopsis thaliana] (TAIR:AT5G11090.1); similar to CTV.15 [Poncirus trifoliata] (GB:AAN62344.1) Range:  from: 6886933    to: 6887460    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g20380.1    Description:  transporter-related. similar to ANTR2 (anion transporter 2), organic anion transmembrane transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ59971.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 6887727    to: 6892434    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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