Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          ---------->DOF2                                                                                       <---------WRKY12                                                                       <-----------GT1 <---------WRKY45                                                                <------NtERF2          <---------WRKY38(1)                                       ---------->DOF2         ------>NtERF2  --------->ANAC46                                      <---------WRKY12        --------->DEAR3(1)      --------->WRKY18(1)                                      <---------WRKY38(1)     <---------DEAR3(1)     <-----------HVH21                         --------->HSFC1(2)                ------>ZmHOX2a(2)  --------->ANAC58                     --------->ANAC58 <---------WRKY45    <------ZmHOX2a(2)   --------->ANAC58                     --------->ANAC58--------->WRKY18(1) <---------ARR14(2)  --------->SPL1(2)          <---------REM1(1)       <------NtERF2          <-----------ARR10   --------->SPL7          ----------->HVH21       --------->ALFIN1       --------->ARR14(3)  --------->RAP2.6(3)          --------->ALFIN1      <---------ANAC58         <---------ARR14(3) --------->SPL1(1)        <---------At4g35610     <---------ANAC46         --------->ARR11(3)<---------SPL7        <---------ANAC46 <---------HSFC1(2)              <---------ARR11(3)--------->ZAT14        <--        --------->At4g35610  <---------DEAR3(1)          --------->ARR14(2)<---------ZAT14   -------- -ZmHOX2a(1) <---------AtMYB61  <---------ANAC58       ----------->ARR10 <---------------AtSPL3<-----   agaagaagtgaggtgaaggtcggaagaaacatcggcgtggtcaaagtcgagtgagcgaagatcgtcgccgatttcactgtacggcatggtcaaaggagga  6868900                                                      <----------DOF2                                                      <---------DAG2                                                 <---------At4g35610                          <------                                                <-----------RAV1(1)                 <<<<<<<<<TBF1                         <---------ANAC46    ------>ZmHOX2a(1)      <------------------------ANAC81                         <---------ZAT6 <---------ANAC58      <----------DOF2   <-----------GT1<----- ----ZmHOX2a(1)   <---------At4g35610   <---------ANAC58  <-----------GT1  ---------->ID1     ------- ->ALFIN1         --------->At4g35610  --------->MYB59<------------------------ANAC81         <------ -ZmHOX2a(1)      <------NtERF2 >>>>>>>>>TBF1<----------DOF2  <---------DAG2<------------------------ANAC81   ggaagaaacttgtgagtggcagcactagtgtgaagaagaattgggtccttttgctgctttttagcttttttgtttttgtttttttcttcttcacaatttt  6869000                                                                                 <---------TGA1a                                                                                 --------->ANAC55(2)                                                                                 --------->O2                                                                                 <---------O2                                                                                 --------->ANAC58                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                              --------->ANAC58   --------->ANAC58                                                              --------->ANAC58   --------->TGA1a                                                              <---------ANAC55(2)<---------ANAC55(2)                                                          <-----------HVH21<---------ARR11(3) ---AHL20(2)            <---------HSFC1(2)         <---------WRKY12    <-----------GT1 ----AHL20(2)           --------->HSFC1(2)      --------->ANAC58    ----------------------->TaNAC69(2) -->AHL20(2)         ---------->DOF2            --------->ANAC58--------->YAB1   --------->ANAC46 ---AHL20(1)      --------->LBD16      --------->WRKY18(1)<-----------TGA1 --------->ARR11(3)   tttgttctctgtctcgcttccccaaaagcttcgagggaatggtcaagctcaagtcaacttcgtcacgcataattcacgatctcacgtctccctctctctt  6869100                                          --------->AHL20(2)                                          <---------AHL20(1)                                          --------->AHL20(1)                        <---------TOE1(3)                                          <---------AHL20(2)                        <---------TOE2(3)                                  <----------DOF2                             <---------DAG2      <--                              --------->GLK1(1)                            <-----------GT1        <--                              <---------GLK1(1)                <---------ICU4 <---------------AGL15                            <------ZmHOX2a(1)            --------->At4g35610  <----------DOF2     <--                     --------->ICU4      <---------ATHB12<---------At4g35610 <-----------------AGL3                     <---------YAB1      --------->AHL20(2)   <---------ATHB12--------------->AGL15 -                ----------->GT1  <---------ANAC58   <-----------GT1     --------->YAB1           <---            <---------At5g28300  <---------ANAC58  <---------AHL20(2)   <---------ICU4      <--------   ctcttctcttctattacagcgttattattaggatttctttccaataaattgattttatcagctaatcaatacaattataactttttaagggtattttttt  6869200       ----------->GT1     --------->ALFIN1                             <---------GLK1(2)   <---------ANAC58                          <---------ICU4   <---------ANAC46                          <--------ATHB1   <---------ANAC58                          --------->YAB1 <---------ZAT14                             -------->ATHB1                                       --- -------ANAC58                               --------->ATHB51                                     <-- -------ANAC46                               --------->ATHB12                         --------->ARR11(3) -------ANAC58                              --------->ICU4                            <---------ARR11(3) -------->ALFIN1            <---------ATHB12<---------ATHB12                    <---------ZAT14  <--- ------MYB46(3)           --------->GLK1(1) <---------YAB1               <------------CBF       <---- -AHL20(2)    --------->GLK1(2)          ------------>ATHB5         *TSS--------->ATHB12   --------->AHL20(2)   gggtggagtgtgtgaaattctgaaccagaaatcatgtgtttctacaatcattgattctgaaaatttttgtggagttattgagtttagagattttaaaata  6869300                                   --------->ARR11(3)                                   <---------ARR11(3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <---------bZIP60(2)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------At4g35610                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ARR11(3)         xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ARR11(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <-----------ARR10         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ARR14(2)                       <---------MYB52(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->RVE1(1)                        <-------GAMYB     ----------->GT1--------->ALFIN1--------->CCA1(2)                             <----------DOF2 <----------DOF2xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------CCA1(2) <---------CCA1(2) xxxxxxxxxxxx ------------>AGL15xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->TOE2(3)    <---------MYB46(3) -------------AGL15xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ARR11(3)  <xxxxxxxxxxxxxxx --------------AGxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------CCA1(2)  --------->TOE2(3) ---TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ------->TEIL     <---------GLK1(1)<xxxxxxxxxxxxxxxxxxx   catcttttggtaaatttttagagtgctgatgtgtcaagatatatagatgaatatcttatctcttcgaaatctcaaatctcaattctttggctgttaagtt  6869400                                                                                <---------MYB46(3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               <---------WOX13(1)                                                                             --------->ATHB12                                                                            <---------YAB1                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <-----------GT1             --------->ANAC46                <---------TOE2(3)  <-------GAMYB     <----------DOF2                   <---------------------WRI1     <---------AHL20(2)  xxxxxxxxxxx ------>ZmHOX2a(1)                    <-----------GT1            --------->AHL20(2)       <---------MYB46(3) xxxxxxxxxx>smallRNA(si3)     <-----------GT1                    <---------AHL20(2)<---------MYB46(3) xxxxxxxxsmallRNA(si3)       <-----------GT1                <---------AHL20(1)<---------ANAC58 xxxsmallRNA(se3)<---------YAB1<---------TOE2(3)            --------->AHL20(1)<---------ANAC58     --   atcctctctttgttttactataagtgttgttttaacatttttacgaaaattacaaaaacatatatattaaaatttatgttgattgttgttgatggttagg  6869500                                                                                                    <                                                                                                    x                                                                                                   <-                                                                                                <xxxx                                                                                              xxxxxxx          <---------------AGL15                                                               <------          --------------->AGL15                                                               <------         <-----------------AGL1                                                               <xxxxxx         ----------------->AGL1                                                               <------         --------->ANAC55(2)                                                                 xxxxxxxx         <---------ANAC55(2)                                                                 <xxxxxxx         <-----------------AG                                                      <---------O2<xxxxx       <-----------GT1                                                      <---------GLK1(1)<xxxxxxx xx>smallRNA(si3)----------->GT1                                       <----------DOF2    xxxxxxxxxxx xxxxxxxxxxxx>smallRNA(se3)                      <-------TEIL  <---------DAG2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->GT1  --------->MYB59             ---------->DOF2    <----------DOF2     --------->O2<xxxxx   gatgttatattacatattttggtaaattttaagagtattgatgtgccaaagtacatagatgaatactttatctctttgaaatctcaagtcgcgatttcgt  6869600         --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <-------GAMYB ---------MYB46(3)                                                      <---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  --------->YAB1 --------ANAC46                                                       <---------YAB1 xxxxxxxxxxxxxxxxxxsmallRNA(le3)                              --------->AHL20(2) xxxxxxxxx>smallRNA(s)                                     -------->ATHB1 ---ANAC46                 <----------DOF2                 <---------ICU4 ---ANAC58              <-----------GT1                   <---------YAB1<---------AHL20(2) xxxxxxxxxxxxxxxsmallRNA(si3)                             --------->ICU4--------->AHL20(2) ---ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->AHL20(1) xxxxxxxx>smallRNA(i)<---------MYB52(1)          <-----------GT1     --------->TOE2(3) xxxxxxxxxxxxxxxsmallRNA(le3)                 <---------ICU4 <---------YAB1          <-----------GT1 xxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->AHL20(2)<---------AHL20(2)       --------->YAB1 xxxxxxxxxxxxxxxsmallRNA(i2)            <---------AHL20(2)--------->AHL20(2)      <---------YAB1 xxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2) <---------ICU4 xxxxxxxxxxxxxxxxxxsmallRNA(si3)  <-----------HVH21    <---------AHL20(2)<---------YAB1   ggctgttaagttatcttctctccgttttactttaagtgtcatttaaaatttttacaaaaaattattaaaaacattataatttctattatacccttacaat  6869700                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                    <---------ANAC58                               <---------ANAC55(2)                                  <---------ANAC55(1)                               <------MYB46(1)                                      --------->ANAC55(2)                               --------->ANAC55(2)                                  <---------ANAC58                               <------MYB83            --------->GLK1(2)            <---------ANAC46                     ----------->GT1                   --------->ARR11(3)    <---------AHL20(2)                    <---------TOE2(3)         <---------ARR14(2)            --------->AHL20(2)                    <---------TOE1(3)         <---------GLK1(2)     <-------TEIL    <---------ANAC55(2)                    --------->DAG2       ------>ZmHOX2a(2)       <---------ANAC58  <---------TOE2(3)                --------->YAB1--------->MYB59 --------->ARR11(3) <---------ANAC58 <-----------GT1               <---------YAB1 <---------TOE2(3)        <---------ARR11(3)   <---------AHL20(2)   ctagatgactcttgattttgataaggttaaattaggtatttgatctcagattttgaaaatctaaaatgcgttcattttttaaatttacgtatacacttga  6869800  Previous    Next  AGI:  At5g20320.1    Description:  DCL4 (DICER-LIKE 4); RNA binding / ribonuclease III. similar to DCL2 (DICER-LIKE 2), ATP-dependent helicase/ ribonuclease III [Arabidopsis thaliana] (TAIR:AT3G03300.1); similar to SHOOT ORGANIZATION1 [Oryza sativa (japonica cultivar-group)] (GB:BAF80150.1); similar to dicer-like protein [Oryza sativa Japonica Group] (GB:ABS32306.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67716.1); contains InterPro domain Argonaute and Dicer protein, PAZ (InterPro:IPR003100); contains InterPro domain Protein of unknown function DUF283 (InterPro:IPR005034); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014 Range:  from: 6859220    to: 6869268    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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