Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->AHL20(1)                                       <---------AHL20(1)                                       <---------ARR11(3)                                 ----------->GT1                         ---------->DOF2                                --------->ANAC58                     --------------->AGL15                                --------->ANAC46           <---------GLK1(2)                                --------->ANAC58           --------->ARR14(2)                      <-                              --------->CCA1(2)            <---------ARR14(2)                      -- -----AHL20(2)               --------->ARR11(1)            --------->ARR11(3)                      <- ---->AHL20(2)              --------->YAB1    --------->HSFB2a(2)    <---------------AGL15     ------ -GT1                      <---------YAB1     <---------HSFB2a(2) ------->TEIL               <-------   aaacgatagcatatgaagaatcacatactatgatacggcaaaatatttctagtaatctacagattttgaatctactaaaggcaaacactcagatttaaca  6852700                                                                                            <------ZmHOX2a(2)       --------->At4g35610                                                                 --------->ARR11(3)       <---------At4g35610                                                                 <---------ARR11(3)      ------->GAMYB                                                                        >>>>>>>>>GATA-2    ---------->DOF2                                                                        --------->AGP1  --------->ANAC46                                                                         >>>>>>>>>GATA-1 --------ZAT18                                                                             >>>>>>>>>GATA-4 ------->ZAT14                            <-------TEIL  --------->TOE1(2)                  >>>>>>>>>GATA-3 --------ZAT14                          <---------ARR14(2)                                --------->GLK1(1) --->ZAT6 ------>NtERF2                 --------->ARR14(2) --------->ANAC46      ------->TEIL------>ZmHOX2a(2) ----GT1 <---------ZAT18               --------->GLK1(1)--------->TOE2(2) --------->AHL20(2)---------   gttcacaacagcggacaaaactcttaagcgttttaaaacggagattcacaaactctaatctacgacgagcggagcataaaatgaatcggaagagatctaa  6852800                                                      ------>NtERF2                                                   ----------------------->TaNAC69(2)                                                <---------ANAC58                                                <---------ANAC58                                               <---------At4g35610       <---------ANAC46      ------                                              <---------YAB1    --------->ANAC58               ------                      <----------DOF2       <---------At4g35610 --------->ANAC58               ------            ---------->DOF2               <---------ANAC58      --------->ANAC46     --------->O2          --------->ANAC58                <---------ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)   <------ >CCA1(2) --------->ANAC58         ------>ZmHOX2a(1)<-----------------AGL1           <---------O2----   aaaatgagaaaaacgaaagactcactttcgcttcttcctccattgcttctgcttgcctccagtggcacgcctcttgtggatagagtcacgagaaatacct  6852900          --------->ARR14(2)          <---------ARR14(2)          --------->GLK1(2)         <---------GLK1(2)                                               --------->GLK1(1) --->TOE2(2)                    ----------->RAV1(1)                 ----------->GT1 --->TOE2(3)            --------->GLK1(2)                          --------->ALFIN1        <------ZmHOX2a(1) --->TOE1(2)            <-----------ARR10                       <------ZmHOX2a(1)   --------->DAG2 ---ANAC55(2)          <---------GLK1(2)                  <------ZmHOX2a(2)  ---------->DOF2 ----->MYB52(1)     --------->YAB1      --------->YAB1    =============HOX2a_HOX2a ---------->DOF2   aagagaaaccagaatccatatatcagaatctaaacaacaatagcataacacagaaacgagatcgaaggagtggagaaatcaaagagaaagcgaggagaga  6853000                                                                                          --------->CCA1(2)                                                 <---------LBD16                         --------->ARR11(3)                <------NtERF2                    --------->LBD16                         <---------AHL20(1)               ------>NtERF2                    <---------ANAC46                         --------->AHL20(1)            <-----------HVH21                  <---------LBD16                          <-----------TBP           <-----------RAV1(1)              --------->ZAT2                --------->ARR11(3)   <---------SPL7                   ---------->DOF2 <------NtERF2   *TSS  <---------ARR11(3)     ----  <---------ANAC58                 <---------ATHB12--------->LBD16--------->ZAT18       --------->AHL20(2)  <---------ANAC58        <---------GLK1(1) <---------ZAT2    <------ZmHOX2a(1)     --------->AHL20(2) --------------->AtSPL3<---------TOE2(3)    --------->At4g35610   <---------ZAT14   ----------->TBP --------------->AtSPL8<---------TOE1(3)    <---------At4g35610<---------ANAC46     <---------AHL20(2)   ttgttcgtacccattgtcgccgattagggtttctccaataaagtttagctgcgcggagttgagaggagtgaacgaagagcttaaatataaatatataggg  6853100                                    <---------RAP2.6(3)                                    ------>NtERF2--------->ANAC58                                   --------->DEAR3(1)                                   --------->ATERF1(2)                                   <---------RAP2.6(2)                                   --------->RAP2.6(2)                       <----------DOF2                                   <---------ATERF1(2)                      <---------MYB52(1)    <--                  ----------->RAV1(2)   <----------DOF2                 ------>NtERF2             <--                  <---------At4g35610  <----------DOF2                 ------>NtERF2        <--------         <---------TOE2(2)        --------->DEAR3(2)                   --------->LBD16     <---------AHL20(2)         <---------TOE1(2)        --------->ATERF1(1)                <---------LBD16       <---------AHL20(1)        <---------STY1(1)       <---------ARR14(2)                  --------->MYB52(1)     --------->AHL20(1)        --------->STY1(1)       --------->ARR14(2)               <---------At4g35610       --------->AHL20(2)   <-----------GT1--------->At4g35610<------NtERF2               --------->At4g35610  <---------YAB1 ------->GT1   <---------YAB1--------->HSFB2a(2) --------->ANAC58--------->ZAT2 <---------TOE2(3)----   agtataaaccctaggttatcatctggcccatccagagccggcctttgggccaagcccatgaagcatcagcttccggccgttttatgttataaataaaatt  6853200                   <---------ANAC46            --------->AHL20(2)                                                                  -----            --------->YAB1                                                                      <----            <---------AHL20(2)                                                                  <----            <---------ICU4                                                 ------>ZmHOX2a(1)    <----            <---------AHL20(1)                                           ------>ZmHOX2a(2)      <----         --------->YAB1                                                 <------ZmHOX2a(2)       <----        <---------YAB1                                                 <---------ARR14(2)      ------      --------->YAB1                                                   --------->ARR11(3)      <-----     <---------ZAT6<---------ANAC58                                    --------->ARR14(2)      <-----   ----------->GT1 <---------ANAC58                --------->YAB1      <---------GLK1(2)       <----- ----MYB83 --------->ICU4              <-------GAMYB                   <---------ARR11(3)    <------- ----MYB46(1)    <---------ANAC46     <---------MYB46(3)               --------->AGP1        -------- -AHL20(2) <---------YAB1            <---------AtMYB61       ---------->DOF2                <-------GAMYB ----->MYB59<--------ATHB1  <---------AHL20(2)     ----------->GT1   ----------->ARR10    <---------TOE2(3)   tggtctagtgataataattttgtgtgttatttcattgttttggttgaagaaaatcgtaaaaaaaaaagagatagatcctggcagattgaactagggttgg  6853300      <---------At5g28300     --------->MYB52(1) <-----------ARR10 ------->TEIL                      <---------ANAC58 ------>GT1                        <------MYB83 -----ANAC58                       <---------ANAC46 -----ANAC58                       <------MYB46(1) --MYB83------->GAMYB              <---------ANAC58 --MYB46(1)                      <---------ANAC46 -----ANAC46      --------->AHL20(2) --->MYB55(2)     <---------AHL20(1)                             --------->TOE2(3) -MYB83<------------AtMYB77   --------->ALFIN1                ----------->RAV1(1)     ------>MYB83 -MYB46(1)        <---------AHL20(2)              --------->GLK1(2)                   ------>MYB46(1) ----MYB46(3)     --------->AHL20(1)              <---------ARR11(3)               --------->MYB46(3) -P  <-----------GT1         <-------MYC3         <---------ARR14(2)         --------->ZAT6   ------- ->ALFIN1  <-------TEIL      ------->MYC3         --------->ARR14(2)  <---------ICU4 --------->MYB52(1)   gtgaatctaaccgtgcatattttattgaaaacgtgttgggtttgagagccaaaatctgttctaacaacataaacatttcacactgaccaacgagagactc  6853400                                                                                               <-----                                                                                             --------                                                                                      --------->REM1(1)                  <------ZmHOX2a(1)                     <-------TEIL          <---------ARR11(3) -->GLK1(2)      <----------ID1 --------->ARR11(3) <---------GLK1(1)          --------->ARR11(3)   ttgcacataagttatcaacaggacaagagtataacatattgaacaattgaaggaaatgtgcatatgttctgtcttccaaacatctcttacatcagttatc  6853500                                   ------>MYB83                                   ------>MYB46(1)                                 --------->TOE2(3)                                 <---------MYB46(2)                                 <---------MYB59                                --------->ANAC55(2)                              <-----------GT1                            <----------DOF2                         <-----------GT1                         <---------AHL20(2)         ----------->GT1                     <---------AHL20(2)           ----------->GT1                    --------->AHL20(2)        <------ZmHOX2a(1)                    <---------AHL20(1)      <---------TOE2(3)                    --------->AHL20(1) <---------AHL20(2)                <<<<<<<<<TBF1                    <---------AHL20(2) --------->AHL20(2)          <----------DOF2                    <---------ARR11(3)--------->AHL20(2)          <---------ICU4 ----YAB1           --------->ARR11(3)<---------AHL20(1)        --------->GLK1(2)    ------>ZmHOX2a(1) ->YAB1            --------->AHL20(2) <---------AHL20(2)    <-----------GT1         --------->TOE2(3)   atctattcatatgtgtccaaaatatattttctttacctaatttttttaggaaacgagaaaattcacaatcttttcttcttcattttcctcagtcatttca  6853600  Previous    Next  AGI:  At5g20290.1    Description:  40S ribosomal protein S8 (RPS8A). Identical to 40S ribosomal protein S8-1 (RPS8A) [Arabidopsis Thaliana] (GB:Q93VG5); similar to 40S ribosomal protein S8 (RPS8B) [Arabidopsis thaliana] (TAIR:AT5G59240.1); similar to ribosomal subunit 8E protein [Brachypodium sylvaticum] (GB:ABL85034.1); contains InterPro domain Ribosomal protein S8e; (InterPro:IPR001047) Range:  from: 6851454    to: 6853068    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g20300.1    Description:  chloroplast outer membrane protein, putative. similar to ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120), GTP binding / P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT3G16620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69284.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71551.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917) Range:  from: 6853428    to: 6856904    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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