Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                          <----------                                                                                          ---------->CDC5                                                                                       <---------ZAT2                                                                                  --------->WOX13(1)                                                                                <---------YAB1                                                                              --------->GLK1(1)                                                                              <---------GLK1(1)                                                                             <---------ARR14(2)                                      <------MYB46(1)                        --------->ARR11(3)                                      <------MYB83                           --------->ARR14(2)                    <------ZmHOX2a(1) ----------->GT1                        <---------ARR11(3)     -           <-----------HVH21         --------->MYB111(1)               <------NtERF2   --------->At4g35610          <---------MYB46(3)         --------->MYB59                  --------->LBD16  <---------At4g35610         <---------AtMYB61           <---------AtMYB61              <---------LBD16    --------->ZAT2         --------->ALFIN1<---------YAB1                         ---------->DOF2<---------ARR11(3)   -      --------->ALFIN1 --------->YAB1--------->MYB46(2)   <-----------HVH21 <------ZmHOX2a(1)   <----   taagcgaagaggtggtcagtgaggatgatgatgcgaggtttggtatcaaatacacatttgggtcagaaaagccggagaggatatcattcagctcagcagg  6821600   <---------DEAR3(1) --------->MYB52(1)          <---------WRKY38(1) -At4g35610              --------->ANAC58 >ZAT2                   --------->ANAC58   <---------ANAC46 >At4g35610   <-------GAMYB<------ZmHOX2a(1)<---------ANAC58 -ZAT2     --------->At4g35610              <---------ANAC58          <----------DOF2           <---- -RAV1(2)  <---------At4g35610--------->MYB52(1)                  <-----------GT1               <---- ---------->HVH21   <----------ID1   <----------DOF2          <---------AHL20(2)  --------->HSFB2a(2) ---------->TGA1  ---------->DOF2------->GAMYB                --------->AHL20(2)  --------->HSFC1(1)< --ZmHOX2a(1)----------->GT1 <---------WRKY12                --------->AHL20(2)   <---------HSFB2a(2)   aagtgacggtgtctgctgttaaaagacaaggacaacggtctttgtttcttgtatgttttccaaaaaaatttccttttttgttttctcgaattgtttttgc  6821700                                                                              --------->ARR14(2)    -                                   <---------YAB1                          <---------YAB1     -------                                <------ZmHOX2a(2)                --------->ATHB12           <--------     <----------DOF2            ====================================HOX2a_HOX2a             ---------     --------------->AGL15     <---------ARR11(3)              <---------WOX13(1)      <---------YAB1 -----ANAC58                   --------->ARR11(3)            <------ZmHOX2a(1)------->TEIL --------->YAB1 -----ANAC58          <---------ANAC58               --------->ATHB12  <----------DOF2--------->AHL20(2) ----------DOF2       <---------ANAC58    <---------YAB1   <---------TOE2(3)  <---------ARR14(2)  ---   ttctttacttttgagagtagaattttgtgcctagatcatgagttttgatttctattcatttgaggattgatttctttatgaatccgatttttataaaaat  6821800                                                                                                 <---                                                                                                <----                                                                                             ------>ZmHOX2a(1)                                                                                            ---------                                                                                         --------->ARR14(2)                                                                                         <---------ARR11(3)                                                                                         <---------ARR14(2)                                                                                        <---------CCA1(2)                                                                                        --------->GLK1(1)                                                    --------->ZAT6                      <---------GLK1(1) ----------->GT1                                  --------->YAB1 --------->ANAC55(2)   ---------->TaMYB80 -------->DAG2                                  --------->AHL20(2)      --------->ANAC55(2) --------- -->YAB1                                     --------->AHL20(2) <---------TOE2(3)      --------->ARR14(2) -AHL20(2)                                --------->TOE2(3)<---------DAG2              <---------ARR14(2) >AHL20(2)                                <----------DOF2  <----------DOF2            <---------CCA1(2) ------->DOF2                <-----------HVH21 --------->YAB1  <-----------GT1      <---------ANAC46   aaaaggttaatcgagatttataggtcgaaaatgtcatttgattactttaaaataatactaactttttacgttttaagtattttctctcgtatatccttaa  6821900                                                                        <---------PCF2          -----               <------MYB83                                            <------MYB46(1)        <------               <------MYB46(1)                                         <------MYB83           -------            <------------CBF                                           <---------DEAR3(2)    <-------           --------->ATHB12                <------------CBF           <---------MYB46(3)     --------       --------->GLK1(2)                 <---------AHL20(2)          <---------ANAC46        -------- --------RAV1(1)   ---------->DOF2      --------->AHL20(2)        <---------AtMYB61          -------- -----TOE2(3)<---------WOX13(1)       --------->AHL20(2)--------->At4g35610                  <------- >TOE2(3) <---------YAB1         ------------>CBF    --------->ICU4<---------MYB46(3)       *TSS----- >TOE1(3) <---------AHL20(2) <---------REM1(1) <---------TOE2(3)  <-----------RAV1(1)    ---------->DOF2   tgttggaagaatttgattggtgaaagcagagttgtagcaatataaaattgatgtaattagcagagtttgtggtgggttcgaattagagaacaaaagatat  6822000                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                               <-----                                                                                               <-----          <---------SPL7                                                                     <------- --------->bZIP60(2)                                                                        --------- --------->ANAC58                                                                         --------->ALFIN1 --------->O2                                                                           --------->ALFIN1 --------->ANAC46                                                                     <---------ANAC46 --------->ANAC58                                                                   <---------TGA1a-- ---->ANAC58                                          ========================================bZIP_DOF ---GLK1(1)                                           ---------->DOF2               --------->TGA1a-- -->CCA1(2)                                     ---------->DOF2                     --------->O2  <-- --ARR11(3)                                   <---------At4g35610               <---------ALFIN1<---- ->ARR11(3)     ------>NtERF2                 --------->At4g35610       <---------HSFB2a(2) <-------- ->ARR11(1)     --------->LBD16           --------->ANAC58              --------->HSFB2a(2)<---------ZAT14 ->ARR14(2)    --------->LBD16            --------->ANAC58           <-----------GT1<---------O2----- --ARR14(2)   <------NtERF2               --------->ANAC46<---------GLK1(2)     --------->ZAT6 ------ ---->ANAC58  <---------LBD16 --------->GLK1(2) ==============================================bZIP_DOF   gccacgttatatcgtccccgcgtattagccacaatctatcgaagacgcagcaaagttaaagcttctcttattttccagacgaacactcgtgtgtgtggtg  6822100        ================HOX2a_HOX2a  --------->ALFIN1 ---------ANAC58 ---------ANAC58 ---------ANAC46 ------MYB46(1) ------MYB83 --------DEAR3(1) --------MYB46(3) ------>ALFIN1 -------MYB55(1) ----DEAR3(1)               <---------ZAT14 ----AtMYB61            <---------WRKY18(1)                                        <---------TOE2(3) --ANAC46   ------>ZmHOX2a(2)                                                      <---------TOE1(3) >ALFIN1------>ZmHOX2a(1) --------------->AtSPL8                                  <-----------RAV1(2) ------->MYB111(2)   <---------ANAC58                       <-------MYC3     <------MYB83         --- ------->MYB55(2)    <---------ANAC58                   ------>ZmHOX2a(1)    <------MYB46(1)    ----- -------ANAC46   ------>ZmHOX2a(2)                  --------->ARR14(2)      <---------TOE1(2)  ------ -----MYB46(3) --------->ARR11(3)                   <---------ARR14(2)<---------ANAC58        ------- -AtMYB61 --------->ARR14(2)--------->ZAT14    <-------GAMYB------->MYC3 <---------STY1(2)   <------- ---->MYB55(2) <---------ARR11(3)             <---------MYB46(3)      <---------ANAC58       ------>NtERF2 --->ALFIN1<---------At4g35610------->TEIL    --------->MYB52(2)   <---------GLK1(2)  --------->ARR14(2)   gtgggtgttcctgatctgatcttccttgactgtacttgtaaccagggtttgttgaatcctcatgtgctcgattcttgctaggtttcaggttttgcagcca  6822200                                                                                                <<<<< ------>AtMYB61                                                                        <<<<<<<<<TBF1 ->NtERF2  ---------->DOF2                                         <-----------GT1  <<<<<<<<<TBF1  << --->RAP2.6(2)                                                 <----------DOF2    <------------------ -->MYB46(3)         <---------ARR14(2)                      ---------->ID1--------->LBD16   <<<<<<<< --At4g35610         --------->ARR14(2)                   <-------TEIL ------>ZmHOX2a(1)  <<<<<<<<<TBF1   ccacaatggatgagaaagaagaagacccgatttcagttccttctcaatcccaactcaaaattcgtcttttttcctcgcgcgatttcttcttcttcttctt  6822300                                                                                                    -                                                                                                   --                                                                                                   --                                                               <---------AHL20(2)                  <-                                                --------------->AtSPL8                             <-    <---------ETT(1)                 <---------HSFB2a(2)     <---------YAB1                    ------ <<<<TBF1                            --------->HSFB2a(2)  <---------AHL20(2)                   ------ <<<<<<<TBF1                    <---------At4g35610       --------->AHL20(2)                   ------ ------ANAC81                <-------TEIL      --------->MYB52(1)<-----------GT1            --------- <TBF1              <---------MYB46(3)--------->LBD16     <---------YAB1                    <--------   cttcttccgacaacaacaacgatggttcagtttcatcttccagacaaaacaacgtactatattattaaaacctttctctatctcttacaaatcgtatacg  6822400         <---------DAG2                                                                          ====      <---------ALFIN1                                                                           <---   <-----------GT1                                                                           <------- -------->KAN4(2)                                                                          <------ZmHOX2a(1) ------->HSFC1(2)                                                                       <---------At4g35610 ------->HSFB2a(1)                                                                  <-----------HVH21 --------HSFC1(2)                                                                 ------>ZmHOX2a(2) --------HSFB2a(1)                                                              --------->ARR11(3) --->ANAC46                                       <-------PIF5                  <---------ARR11(3) --->ANAC58                                       ------->PIF5     <-----------RAV1(2)  --------->At4g35610 --->ANAC58                               <----------DOF2        ----------->RAV1(1)------>ZmHOX2a(1) >ARR14(2)      --------------->AtSPL8    <---------DAG2        ----------->HVH21 ================HOX2a_HOX2a -ARR14(2) <----------DOF2             <-----------GT1<----------DOF2         <---------YAB1 --------   aaaattctccactctttgtttgtactcacattgatggaatttcacttttgcccctgctttgaaacagcgacagatgggttatgatccttcagaggaactc  6822500  Previous    Next  AGI:  At5g20200.1    Description:  nucleoporin-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65687.1) Range:  from: 6816709    to: 6821812    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g20220.1    Description:  zinc knuckle (CCHC-type) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO41044.1); contains InterPro domain Heat shock protein DnaJ, cysteine-rich region; (InterPro:IPR001305); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 6821992    to: 6825983    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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