Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ALFIN1                  --------->AGP1                  --------->ARR11(3)                  <---------ARR11(3)                  --------->ARR14(2)                  <---------ARR14(2)           ---------->DOF2   <---------ANAC46                                             <---------TOE1(2)       <---------TOE2(3)     --------->ALFIN1                                             <---------TOE2(2)     ---------->DOF2    ---------->DOF2                                          <---------ANAC58 -------->ZAT2    <---------AGP1--------->REM1(2)                                <---------ANAC58 ---------ZAT2<---------At4g35610                     <---------At4g35610       --------->ZAT2 ---------At4g35610 ------>ZmHOX2a(2)                 --------->At4g35610       <---------At4g35610 < -------->At4g35610<------ZmHOX2a(2)             --------->WOX13(1)   ---------->DOF2    ------>ZmHOX2a(1) ------At4g35610 <---------CCA1(2)     --------->ANAC58           --------->YAB1--------->At4g35610 - ----->At4g35610----------->ARR10      --------->ANAC58    --------->GLK1(1)    <---------ZAT2     <-   gcagctgcaaaggtagagcagatctgtaaaggtgtggagagaagccagagtctatcaactgatttcaatcttgaaagcggtgagcttgctcctatgttta  6782200                               ------>ZmHOX2a(2)                               ===============================HOX2a_HOX2a                             <---------ARR11(3)                             <-----------ARR10                       --------->YAB1                         ----------->RAV1(2)                       --------->ANAC46                       --------->AtMYB61                        <---------ZAT18                       <---------ALFIN1                         --------->ZAT18    ------>NtERF2      --------->DEAR3(1)                       --------->ZAT14   <---------PCF5   --------->ANAC46                   ----------->TGA1   <---------TCP16(1) --------->MYB46(3)             <---------At4g35610 --------->LBD16   <---------ZAT18      ----------->GT1----------->HVH21             --------->ALFIN1 ---------LBD16    --------->ZAT18     ----------->GT1 ------>ZmHOX2a(1)     ---------->DOF2 -------->LBD16   --------->ANAC58 <---------ZAT2    --------->At4g35610     --------->MYB46(3) --------LBD16    --------->ANAC58 --------->ZAT2    ----------->RAV1(2)  <----------ID1   tcccggggccatttgccatcgcgcaccacctgatctcagcatgggtaaatcaggctcctgacgatgttcactcaaaacaacaagcgggtgtctctctctc  6782300                                                     <---------ANAC46                                                     <---------ANAC58                                           <---------MYB52(1)                               ---------                                       --------->MYB52(1)                                   <--------                                       ------>MYB46(1)                                   <---------ANAC46                   ------->TEIL        ------>MYB83  <---------ANAC58                    --------->ALFIN1           ---------->DOF2           --------->AtMYB61<----------DOF2              ------>ZmHOX2a(1)   aagtttgtagctagaaagatgaacttagatgcttagaaaccaaacgtttgctatggcttctatgcttattttgaattgctgagtcctaagtgtgtggact  6782400                                                                 --------->AHL20(2)                                                                 <---------AHL20(1)                                             --------->WOX13(1)  <---------AHL20(2)                                            --------->AHL20(2)   --------->AHL20(1)                                            <---------AHL20(2)  <---------ATHB12                                      --------->AHL20(2)   --------->TOE2(3)                      ------->GAMYB   --------->YAB1    <---------WRKY18(1)                     --------->MYB46(3)    --------->AHL20(2)   --------->AHL20(2) >ZAT18              --------->DEAR3(1) --------->ICU4<---------WOX13(1) -ZAT18       <----------DOF2    <------ZmHOX2a(2)  --------->ATHB12       <-----------TBP  <--------   tcgctcgaagttatttctttgcaacgacgatttagatcaataaaaattaatcaaagattgacctcaataaatttgagttttatagttcgtttttctttag  6782500                                                                    *TSS      --------->YAB1                                                                   ----------->GT1         ----------                                     ------>ZmHOX2a(1)            --------->DAG2  --------->GLK1(1) --DOF2                 <-----------GT1          ----------->GT1 ---------->DOF2  <---------GLK1(1)   tggctgtgttcttctaaatcagatgtttactgcttcttcctaatgttcttgttgtaaaacaaaaaaaaaaagttaacaaatgagaattccactgttctta  6782600                                                                                                -----                                                                                               ------                                                                                              >>>>>>>                                                                                              >>>>>>>                                                                                              -------               <---------ANAC58                                                               >>>>>>>               <---------ANAC46                                                               >>>>>>>               <---------ANAC58          --------->GLK1(2)                                    -------    --------->ANAC46                    --------->ARR14(2)                                    <------ --------->ZAT14                        <---------GLK1(2)          ================================== --------->ZAT18                        <---------ARR14(2)         ================================== <---------ZAT18                    --------->LBD16                ------>ZmHOX2a(1)<----------DOF2 <---------ZAT14                    <---------LBD16             ------>ZmHOX2a(1)---------->ID1<----- ------------->TaNAC69(2)       ------>ZmHOX2a(1)    <---------ALFIN1  --------->ANAC46      --------   gagtacacatctccatagcgtagcattcactctccttccccagattctaaaaccccctccctagtcctcctccaaaccattttgttctttctcagagatc  6782700     <---------ICU4     --------->YAB1 ->ZmHOX2a(2) --->CCA1(2)                              --------->ZAT2                           --------->ARR14(2) >>GATA-2                                 <---------At4g35610                      <---------ARR14(2) >>GATA-4                            <------MYB46(1)                               --------->GLK1(2) -->AGP1                             <------MYB83                      --------->ARR11(3) >>GATA-3                       --------->ANAC58                       <---------ARR11(3) >>GATA-1                       --------->ANAC58                       <---------AGP1    <---------ARR14(2) -->ARR11(3)                ------>NtERF2 <---------ZAT2    <-----------HVH21     <---------GLK1(1) ---ARR11(3)                <---------ATERF1(1)            <-----------RAV1(1)--------->ANAC58 =HOX2a_HOX2a              --------->DEAR3(1)            <---------ANAC58     --------->ANAC58 ==HOX2a_HOX2a           --------->LBD16  --------->At4g35610         <---------CCA1(2)  --------->ARR14(2) -ZmHOX2a(2)             ------>NtERF2  <---------WRKY12 ----------->RAV1(2)---------->DOF2       <-- ->GLK1(1)             <---------LBD16<-----------HVH21  <---------ANAC58------>ZmHOX2a(2)  <--------   taaaccatcatggctacttccttcttccggcgactcgctaggtcagctccgattacattccctgtcgcatttggatctcaaagcaaatctggttctggcg  6782800                                        <---------GLK1(2)                              <---------DAG2                              <----------DOF2                             --------->HSFB2a(1)          <---------ALFIN1   <---------HSFB2a(1)     --------->ARR14(2)    <---------ALFIN1    ------>ZmHOX2a(1)        --------->GLK1(2)     <---------ARR14(2)   <------NtERF2 --------->ARR14(2)            --------->MYB46(3)    <---------MYB52(1)  --------->ANAC46<---------ARR14(2)          ----------->RAV1(1)   --------->LBD16     <---------LBD16<---------MYB46(3)         --------->LBD16 <---------LBD16 <---------ZAT18    <---------MYB52(1)          --------->ANAC46 --------DOF2    --------->ABI4(2) --------->LBD16             <---------LBD16       <-----------GT1 ---RAV1(1)      --------->ZAT14 <---------LBD16         ----------->HVH21  ----------->GT1        <-   ctttccggttctccaccggtgcaatcgcggcactttccggtggattctcctattactacttgacatccggcaacaatctggtgaatttttctatctaatg  6782900                                       --------->AHL20(2)                                       <---------AHL20(2)                                     <---------MYB52(1)                                   <---------ANAC58               ------>ZmHOX2a(2)                                   <---------ANAC46  <---------At4g35610                            <                                   <---------ANAC58  --------->ZAT2                                 - ---------DOF2 --------->ICU4  <---------GLK1(1)     <---------ZAT2  <----------DOF2        ---------   tctttgatttctatgtaatagttgatcacttcgaattccgtttaatttttcgtcgagctggtttttgatccctttctcttgcattttgtccaatgtgtgt  6783000                                                                     <---------MYB52(1)                                                          ------>ZmHOX2a(2)                                                         <------ZmHOX2a(2)                                                        --------->ARR11(3)             <---------TOE2(2)                                                        <---------ARR14(3)             <---------TOE1(2)                                                        --------->ARR14(3)            <-----------RAV1(2)                                                        <---------ARR11(3)        <---------ARR11(3)                                                        <---------ARR14(2)        --------->ARR11(3)                                                        --------->ARR14(2)      <---------YAB1      =  ---------->ID1                  <---------------------WRI1       <---------ANAC58 ================= <-------GAMYB       --------->YAB1                     <---------AGP1      <---------DAG2          < ---------MYB46(3)  <---------ATHB12                  ----------->ARR10     <----------DOF2         = -------->MYB52(2)--------->WOX13(1)  <------ZmHOX2a(2)<---------CCA1(2) <-----------GT1       <----- >ALFIN1   --------->YAB1  ----------->GT1   ---------->DOF2       <---------ANAC58 ------>ZmHOX2a(2)   gtttgttgtattttcatattcaatcagacgagtttatacgatcaatacaaagtatgtagatcttcattttcgtttgtactttatgatctcaggtttatct  6783100  Previous    Next  AGI:  At5g20070.1    Description:  ATNUDT19 (Arabidopsis thaliana Nudix hydrolase homolog 19); hydrolase. Identical to Probable NADH pyrophosphatase NUDT19, chloroplast precursor (NUDT19) [Arabidopsis Thaliana] (GB:Q94A82); similar to unnamed protein product [Vitis vinifera] (GB:CAO65631.1); contains InterPro domain NADH pyrophosphatase-like, N-terminal (InterPro:IPR015375); contains InterPro domain NUDIX hydrolase, core; (InterPro:IPR000086); contains InterPro domain NUDIX; (InterPro:IPR015797); contains InterPro domain Zinc ribbon, NADH pyrophosphatase (InterPro:IPR015376) Range:  from: 6779856    to: 6782484    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g20080.1    Description:  NADH-cytochrome b5 reductase, putative. Identical to NADH-cytochrome b5 reductase-like protein [Arabidopsis Thaliana] (GB:P83291;GB:Q8LBD3); similar to ATCBR (NADH:CYTOCHROME B5 REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT5G17770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65634.1); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Oxidoreductase FAD-binding region; (InterPro:IPR008333); contains InterPro domain NADH:cytochrome b5 reductase (CBR); (InterPro:IPR001834 Range:  from: 6782568    to: 6786666    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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