Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->AHL20(2)                                    <---------AHL20(2)                                   <---------AHL20(2)                                <--------HAHB4                                --------->ATHB51                                -------->ATHB1                                --------->AHL20(2)                                <---------AHL20(2)                               <---------ATHB12                               --------->ICU4              --------->TOE1(2)<---------ATHB51                                   ------>ZmHOX2a(1)           ------->TEIL      --------->WOX13(1)                               --------->ARR14(2)   <-   ---------->DOF2        ------>MYB46(1)                                ----------->GT1           <- <---------MYB52(2)       ------>MYB83   ----------->GT1                <---------TOE2(3)          -- ->ZmHOX2a(1)--------->YAB1<---------ATHB12<---------ZAT6 --------->TOE2(3)   <---------ARR14(2)   <-   tcaactaaagatgaatcgtgagaaaacctatcaattatttatttagtgaaaaaactctaaacttaaaatttgttaatgtaaatcctcatccatctatatt  6756200                                       <---------AHL20(1)                             --------->AHL20(2)                             <---------AHL20(2)                <---------ICU4                             --------->AHL20(1)                <---------AHL20(2)                        --------->AHL20(2)                    --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AHL20(1) --------->AHL20(1) --------ANAC46         <---------AHL20(2)                --------->AHL20(2)                  ------- --------ANAC58        --------->YAB1 --------->ICU4     --------->YAB1                 ----------->GT1 --------->GT1         --------->AHL20(2)    <-----------GT1--------->YAB1        --------->YAB1 --------ANAC58    <---------YAB1----------->GT1    ----------->GT1               --------->AHL20(2)<   gtcgtgaaaattggacggattacaattaaaataaaatgtaatatttttcacaaattgaaaaataataaatatacacttaaacaataaaaattgtaaataa  6756300                          <---------ARR14(2)                          --------->ARR14(2)                                                   <-----                          <-----------ARR10                                                    <-----                          --------->GLK1(2)                                                    <-----                          <---------ARR11(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------TOE2(3)                          ------->TEIL     <---------AHL20(2)                           <---------TOE1(3)                         <---------ARR14(1)--------->AHL20(2)                   <---------RVE1(1)                       <---------MYB59    <---------AHL20(1)                   --------->ARR11(3) ----------->RAV1(1)  --------->ANAC46    <---------AHL20(2)        ----------->GT1<---------YAB1 <-- -->AHL20(2) <---------YAB1               --------->AHL20(1)      ----------->GT1 --------->AHL20(2) ----------ID1      <-----------GT1       --------->AHL20(2)    ---------->DOF2<---------ARR11(3)<---   aaacaacaaaatgttcttatttataccgaatctaaattttctaatttatttaagctctaaaatttagaaagtgaaaaatgagatttttataaggtttgtg  6756400                                                                                               ------  <---------HSFB2a(2)                                                                     <---------AHL20(2) ----ANAC58                                     <---------YAB1                            --------->AHL20(2) ----ANAC58        <---------AHL20(2)        <---------YAB1                          <---------AHL20(2) ----ANAC46       <---------AHL20(2)         <---------AHL20(2)                  <---------GLK1(2) -----GAMYB  <-------TEIL       -------->P <---------ICU4                   <-----------GT1---------- --------RAV1(1)  --------->AHL20(2)      --------->ICU4              ----------->GT1--------->AHL20(2)   tgttgtcgaagtcgattcattttaatttgaccctaacccgtctaatttttattactaaaaatgaagagagaattgtattaacagaatttaaattaaaggg  6756500                                                                                      <---------ANAC58                        ----------->GT1                                      ----------->GT1             <----------DOF2                                            --------->AHL20(2)         --------->YAB1<---------AtMYB61                                --------->YAB1<---------ANAC58   <-----------GT1   <---------ANAC46     <----------DOF2              <---------ATHB51   <---------AtMYB61 ----->GT1 <---------YAB1      <---------YAB1     --------->AHL20(2)   <---------ATHB12 --------->ALFIN1 >DOF2  <---------ATHB12<---------MYB46(3)<---------DAG2           ------------>CBF   <---------ANAC46   tatttttacaatcatctttagtcgagtggttttattactaaaaacttttttttaaaatacaaatgtttatgcaataatatggtttattcggtgtggtttt  6756600                        --------->YAB1                        -------->HAHB4                       <---------YAB1             ---------->DOF2                                                 ------>MYB46(1)        --------------->AGL15                                                --------->MYB52(1)        <---------------AGL15     --------->MYB52(2)               <-----------GT1  <------MYB83--------->DAG2   <----------DOF2                  --------->YAB1    <----------DOF2  <------MYB46(1)    --------->YAB1*TSS                      --------->YAB1  ------>MYB83 --------->MYB59   --------->AHL20(2)  <---------AtMYB61    --------->AHL20(2)  ----------->GT1   agttgggttacccaaaaaagttttaataataggctttagttgtggttttggtattgcagacattaaaaataacaaaaccaagcggtttatagactcggtt  6756700                      <---------AHL20(2)                                     <---------ANAC58           --------->MYB52(2)                                                <---------ANAC46          <---------TOE1(2)                    <---------AHL20(2)            <---------ANAC58      <-         <---------MYB52(1)          --------->AHL20(2)                  --------->ARR11(3)      <---        <---------SPL7--------->AHL20(2)    ----------->GT1              <---------ARR11(3)   -------       <---------MYB46(3)           --------->AHL20(2)               ---------->DOF2         <-------   tattttgggtcgttcgttttccattttattctcacaaaataaaaaatagtaaattgaacttacaaaaaaaaaaaagatgtcttgttggataatccaaggt  6756800                 <----------DOF2        <---------AHL20(2)                                                      ------>ZmHOX2a(2)    <---------------AGL15                                                      <------ZmHOX2a(2)    --------------->AGL15                                                     <---------ARR14(2)   ----------------->AGL3                                                     <---------ARR11(3)   <-----------------AGL3                   ------>ZmHOX2a(2)                 --------->ARR11(3) ---------DOF2  --------->MYB52(2)        --------->ARR11(3)                  --------->ARR14(2) ----TEIL---------->DOF2   --------->ARR11(3)               ---------->DOF2   --------->AGP1 -->HSFB2a(1)  <-------TEIL<---------ARR11(3)         ------->TEIL           <---------GLK1(1) --TOE1(2) <---------TOE2(3) ------>ZmHOX2a(2)   <----------DOF2             --------->GLK1(1)      -   tcttttctatataaaggttctttgctcatgatcttagtccctgtgatctatctttgaatctcaaaagcatacttgagagagatctgtttcgataatttgc  6756900                                                                                        <------NtERF2                                                                                        --------->RAP2.3(1)                                                                                       <---------ERF1                                                                                       ------>NtERF2                                                                                       <---------ORA47(2)                                                                                       <---------RAP2.3(1)                                                                                       <---------ATERF1(1)                                                                                       <---------DEAR4(2)                                                                                      <---------ANAC46                                                                                      <---------DEAR3(1)                                                                                      <---------ATERF1(2)                                                                                      --------->ATERF1(2)                                                                                      --------->DEAR3(1)                                                                                      <---------RAP2.3(2)                             --------->ALFIN1                                         <---------RAP2.3(3)                   ------>NtERF2                                                     <---------ABI4(1)                   <------NtERF2                                                     --------->RAP2.3(1)                  ------------------>SPL14                                           --------->ATERF1(1)                  ------>NtERF2                                                      <------NtERF2                 <---------ANAC58                                                   <---------RAP2.3(1)                 <---------RRTF1(2)                                                 <---------ATERF1(1)                 <---------RAP2.3(3)                                               --------->ALFIN1                 <---------ANAC58                                                  --------->ATERF1(1)                 <---------DREB2C(2)                                              --------->At4g35610                 <---------RRTF1(3)                                               --------->ATERF1(1)                 <---------RAP2.3(2)                                              <---------ABI4(1)                 <---------RAP2.6(2)                                         <---------TOE2(3)                 --------->ATERF1(2)                                         <---------TOE1(3)                 <---------ATERF1(2)                                      --------->DOF5.7(2)                --------->RAP2.6(3)                                      --------->TOE1(3)    <---------At5g28300   <------ZmHOX2a(1)   <-----------HVH21          --------->TOE2(3)   --------->YAB1<---------DEAR3(1)          ------>ZmHOX2a(1)    --------->TOE1(2)<---------DEAR3(1)  <---------ATHB12<---------RAP2.3(1)      ----------->RAV1(2) <---------GLK1(1)  <---------At4g35610  --------->MYB46(3)  <---------SPL7   <---------ARR11(3)    <------ZmHOX2a(1)   --------->ALFIN1 -------->WOX13(1)<---------ERF1  <------NtERF2----------->HVH21 ----------->RAV1(2)<---------DEAR4(2)   ttcaatcaccgtgttaatggcggccgtaggagtggaggcgagacctcctgtgacagcgatggaggaaacctgcaacgttaagggagcggcggcgaaacaa  6757000                                               ----------->RAV1(2)                                              <---------ATERF1(1)                                              ------>NtERF2             --------->TOE2(3)                                             --------->DEAR3(1)         --------->TOE1(3)        <---                                           <---------ATERF1(1)       <-----------GT1           <-----                                          <---------ALFIN1      <---------ANAC46            ---------                                      <---------At4g35610   --------->DAG2                <----------                           <---------GLK1(2)<---------At4g35610 ----------->GT1        --------->At4g35610            --------------->AtSPL8    --------->At4g35610  ---------->DOF2             <---------At4g35610   ggagaagggcttaacaagtactacctccagcatctcgatgagctccagcgcctgcaacgcgaaaagtcgtataaccttaatcgtcttgaagctcagagga  6757100  Previous    Next  AGI:  At5g20000.1    Description:  (REGULATORY PARTICLE TRIPLE-A 6A); ATPase. similar to RPT6A, ATPase [Arabidopsis thaliana] (TAIR:AT5G19990.1); similar to unknown [Populus trichocarpa] (GB:ABK95350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44148.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937) Range:  from: 6756635    to: 6759752    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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