Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->TOE2(3)    --------->TOE1(3) ---->HSFB2a(2)                                  --------->GLK1(2) -----HSFB2a(2)                          <----------DOF2 ----TOE1(1)                          --------->ZAT6 ----TOE2(1)         ----------->GT1<-----------GT1 <----------DOF2       --------->DAG2 -->SPL7      --------->DAG2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ---------->DOF2       <----- -SPL7       ---------->DOF2 <---------DAG2  --------->YAB1    ----------->GT1         --------->YAB1 ---->AtSPL3--------->YAB1   <----------DOF2<---------YAB1     <---------ANAC46        ----------->GT1   agaaaaccttacaataaaagtgagagtaaaactttttgtaacacttttgataatctttttgtgttttgtataaaaaaaagctatacaaattgtaatactt  6751600               ---------->DOF2                                                                    <--              --------->YAB1                                                                   ------             <---------ATHB12                                                               ---------            ------>MYB83                                                                  ------>ZmHOX2a(2)            ------>MYB46(1)                                   --------->ZAT18    --------->ARR11(3)       <-----------GT1   <---------TOE2(3)                    --------->ZAT14    <---------ARR11(1)  <---------YAB1    <---------MYB46(3)                        <---------ZAT14   <---------CCA1(2) --- -----DOF2 --------->WOX13(1)                       --------->AtLEC2   ----------->GT1  --------->ARR11(3)   tgtttttattcaccaatcaaagtcgttgatgttgaaacatgttgttgagacatcatgcatcaactacactaaaatgttattcaaatctttgatctagtaa  6751700                                    --------->ANAC46                                <---------AHL20(2)                              --------->CCA1(2) -------AHL20(2)      <---------TOE2(3) ---------->DOF2 --->YAB1    <---------ANAC46<---------ARR11(3) -->GT1   <---------YAB1     --------->ARR11(3) ----------->GT1--------->HSFB2a(1) ------>AHL20(2)     ---------->DOF2<----------ID1   <---------YAB1                      <---------ETT(2)   taaaacatgtttatgatgtgtattaaagtaagatttaaacgaaaaagaagaagttattaatccgaatgtttcaaagtttcaactatctccctcgacaact  6751800                        --------->AHL20(2)                                                <---------ZAT6              ----------->GT1                               <---------MYB46(3)       --------->ZAT2             --------->DAG2                                 --------->HSFB2a(1)      --------->At4g35610             <---------TOE2(3)                     --------->ZAT6 --------->MYB52(1) <---------ZAT2       --------------->AGL15          --------->YAB1        <---------HSFC1(2)     --------->MYB46(3)       <---------------AGL15        --------->ANAC58        --------->HSFC1(2)   ------>NtERF2      <-----------------AGL1        --------->ANAC58        <---------HSFB2a(1)--------->MYB46(3)   ctcttcttactcgataaggtgaaacttaaattactaacaagcagaacgttttatctctaagatggttccaacggcttattagccaccagctagagtaagc  6751900                                                                      --------->AHL20(1)                                                                  --------->YAB1                                                                 --------->AHL20(2)                                                          ----------->GT1                          <-                                                         --------->DAG2       <------------CBF     <-                                                   --------->ANAC46   <---------ARR11(3)           --                                                   --------->ANAC58   --------->ARR11(3)        <----                                                   --------->AtLEC2   <---------AHL20(1)<---------AHL20(2)                      <------ZmHOX2a(1)            --------->ANAC58--------->AHL20(2)----------->GT1                  <------ZmHOX2a(1)      ----------->GT1---------->DOF2     <---------YAB1  <--------   ctgagaaaacgtagactcgaggaaggactctaaacgaactagaaggttaagacaagcaaaaagtaaaataaaaatatttctattgttgagttaatttcct  6752000               --------->bZIP60(1)          --------->ANAC55(2)         <---------TOE2(3)    --------->AHL20(2)    <---------AHL20(2)   <---------AHL20(2)                   <---------GLK1(1)   --------->AHL20(2)             ----------->HVH21 --------AHL20(2)               <---------ANAC58 --------YAB1  <---------TGA2(1)<---------ANAC46        ------>ZmHOX2a(2)                      ------ ------->AHL20(2)             <---------ANAC46   --------->GLK1(2)                        <---------At4g35610 ------DOF2    <---------bZIP60(1)--------->ALFIN1  <---------YAB1            <----------DOF2  ====== ---GT1 *TSS   --------->GLK1(1)<---------ANAC58<---------GLK1(2)             <---------DAG2   ======   ttttattaatttaggtgatatcatataatgcttcgcgtgagggtttctgagattctgatcgacgaaaactaatctctctcctttttcttctcatctcctt  6752100                                                           ----------->ARR10                                                       <------ZmHOX2a(1)                                                   <---------SPL7                                                <------NtERF2                                                ------>NtERF2--------->ARR11(1)                                               <---------ERF1--------->ARR14(2)                                              <---------ATERF1(2)                                              <---------RAP2.3(2)                                              --------->ATERF1(2)                                              <---------RAP2.3(3)      ------>ZmHOX2a(2)                       <---------RRTF1(3)     --------->GLK1(1)                        <---------DEAR3(1)     <------ZmHOX2a(2)                        <---------RAP2.6(2)     <---------GLK1(1)                        <---------RRTF1(2)          ------>ZmHOX2a(1)    --------->ARR11(3)                        <---------ANAC58 <-------TEIL ----------->HVH21    <---------ARR11(3)                        <---------ANAC58--------->CCA1(2)   <---------GLK1(1)                          <---------DREB2C(2)      <------NtERF2              --- >ZmHOX2a(1)                                 --------->RAP2.6(3)     <---------ANAC58            <--- ============HOX2a_HOX2a       <---------ATHB12<---------RAP2.3(1)   <---------ANAC58       <-------- ===========HOX2a_HOX2a      --------->WOX13(1)------>NtERF2 <---------ARR14(2)           <------ZmHOX2a(1)   actagagatctctgtcttcgataatttgtttcaatcactgagaaaatggcggccgtaggagtagattcgaggcgtcctgagacagcgatggaggaaacct  6752200                ------>NtERF2                <---------ATERF1(1)                <---------ERF1                <---------DEAR4(2)                <---------RAP2.3(1)                <---------ORA47(2)               --------->ATERF1(2)               <---------DEAR3(1)               <---------ATERF1(2)               --------->DEAR3(1)               <---------ANAC46               <---------RAP2.3(2)              <------NtERF2              --------->ATERF1(1)              --------->RAP2.3(1)             <---------RAP2.3(1)             <---------DEAR4(2)            <---------DEAR3(1)                                                      ----------->RAV1(1)            --------->ALFIN1                                                       ----------->HVH21            --------->ATERF1(1)                                                <---------At4g35610           --------->At4g35610                                                 --------->At4g35610     ---------->DOF2                                                           <---------ZAT2  --------->TOE1(3)                                                            --------->ZAT2 <---------ANAC55(2)                                                          ------>NtERF2 <---------O2<---------ATERF1(1)                                             <-----------RAV1(2) <---------ANAC46                                                            ===================RAV <---------ANAC55(1)                                                   <---------ALFIN1 <---------ANAC58--------->RAP2.3(1)                         <-------TEIL  ------>NtERF2 <---------ANAC58<------NtERF2                          <---------ALFIN1<---------ATERF1(1)       <-- -------->HVH21<---------RAP2.3(3)                     <---------At4g35610--------->DEAR3(1)   ------ --------HVH21<---------ABI4(1)          --------------->AtSPL3    <---------At4g35610  <---------At4g35610 -GLK1(1) --------->ALFIN1               --------------->AtSPL8    --------->At4g35610  --------->At4g35610   gtaacgtgaaaggagcggcggcgaaacaaggggaagggcttaagcagtactatctccagcacatccatgagctccagcgccagcttcgacagaagactaa  6752300                                                                                                 ----                                                                                               <-----                                                                                              <------                                                                                         <----------DOF2                                                                                        ------>ZmHOX2a(2)                --------->At4g35610                                                   --------->ARR11(3)       ------->GAMYB                                                                  <---------ARR11(3) --------->TOE1(3)        <---------KAN4(2)                                           --------->ARR14(2) --------->TOE2(3)  ---------->DOF2    <---------HSFB2a(2)                            <---------AGP1 ---------GT1   <---------At4g35610    --------->HSFB2a(2)                            <---------ARR14(2) --->YAB1    ---------->DOF2  ------->TEIL  <---------ARR11(3)   --------->TOE2(3)   <---------CCA1(2)   taacctcaatcgccttgaagctcaaaggaatgaactcaattctcgaggtctcttcttccttctcttaccctaattctctgcaaaattggatcttttttat  6752400                        --------->GLK1(2)                       <---------ARR14(2)                       <---------GLK1(2)                       --------->ARR14(2)                   <---------At4g35610            <---------ANAC58                   <---------ANAC58            <---------ANAC55(2)                <---------ANAC58  <---------WOX13(1) ----->YAB1 --------->ANAC55(2)       <----------DOF2       --------->ZAT2 ------GT1  <---------ANAC46         <---------ANAC58       <---------ZAT2 -----GT1   <---------ANAC58         <---------ANAC58       --------->At4g35610           <---------AtMYB61   catctccttgtgtttcgtaatctcagattctgtgctagggctttcgatttcgttccaattggagctgagtgatttcaaatttcaaaattgttgtggtgat  6752500  Previous    Next  AGI:  At5g19990.1    Description:  RPT6A; ATPase. similar to (REGULATORY PARTICLE TRIPLE-A 6A), ATPase [Arabidopsis thaliana] (TAIR:AT5G20000.1); similar to unknown [Populus trichocarpa] (GB:ABK95350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44148.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937) Range:  from: 6752008    to: 6755082    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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