Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <---------ICU4                                                                             ------>MYB83<-----------GT1    --------->MYB46(3)                                                       ------>MYB46(1)  ----------->RAV1(1)                                                      <---------MYB59          < ----->GAMYB                --------->AHL20(2)                           <---------ARR11(3)         - ----->At4g35610        ----------->GT1                  --------->ATHB12--------->ARR11(3)     <----   actgcaacaattgagcattctgaaactagtttaaatctaagtatatcagtgagagtgactcattgaattagcgaagacctaatgccaattgttactgact  6743400                                                                          --------->LBD16                                                                      --------->ARR14(2)                                                                      <---------ARR14(2)                                                                    <---------MYB46(3)                  ----------->RAV1(2)                               <---------DEAR3(2)         --------->ANAC58                                        <-----------HVH21  <-----------GT1         --------->ANAC58                                  <---------ARR14(2)       <<<<<<<<<GT-1     <---------WOX13(1)     <----------DOF2             --------->ANAC46 --------->HSFB2a(2)   --------->ATHB12      <---------ARR11(3)             <---------ANAC58 <---------LBD16         ---- ---------At4g35610      --------->ARR11(3)             <---------ANAC58 <---------HSFB2a(2)   <----- -------->At4g35610<---------LBD16                   --------->TOE2(2)<-----------HVH21--------->TOE1(2) ------DOF2      ------->TEIL     ------>NtERF2     ----------->RAV1(2) <---------LBD16--------->TOE2(2)   ttagctgattgaagcaatgtacctggagaactttggggccttgaagatgagaacacctgcgtaactcggtcgggtccgggagggatttacctccgattaa  6743500                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                    <------ZmHOX2a(2)                                                               --------->LBD16                                                               <---------ATERF1(1)                                                              --------->ATERF1(2)                                                              --------->RRTF1(3)                                                              --------->RRTF1(2)                                                              <---------DEAR3(1)                                                              --------->DEAR3(1)                                                              <---------ATERF1(2)                                                              --------->RAP2.6(2)                                                              --------->RAP2.3(2)                                                             --------->ATERF1(1)                                                             --------->RRTF1(1)                                                             <------NtERF2                                                             --------->ORA47(2)                                                             --------->RAP2.3(1)                                                             --------->RAP2.6(1)                                                             --------->ERF1                                                            --------->ABI4(1)                                                            <---------At4g35610                                                            --------->At4g35610                            --------->At4g35610             <---------RAP2.3(1)                            <---------At4g35610             ------>NtERF2                          <---------ZAT14                   <---------DREB2C(1)                         ------>NtERF2                      --------->DREB2C(1)                        --------->DEAR3(1)                 --------->DEAR3(1)                      <---------ATERF1(1)           <---------AHL20(2) <---------TOE2(3)                      ------>NtERF2                <----------DOF2  <---------ATHB12                     <---------ALFIN1         <------NtERF2--------->ATERF1(2)                     --------->DEAR3(1)       --------->ATERF1(1)--------->DEAR3(1)                   <---------ATERF1(1)       <---------RAP2.3(1)<------NtERF2                  <---------ARR14(2)         ------>NtERF2 <---------ATERF1(2)                  --------->ARR14(2)        <---------RAP2.6(2)------>NtERF2                 --------->ZAT2             <---------RAP2.3(2)--------->ABI4(1)                 <---------ZAT2             <---------ANAC46<---------ATERF1(1)                 <---------At4g35610      <---------ATERF1(1)--------->DEAR4(2)                 -----      --------------->AGL15<---------ALFIN1--------->ATERF1(1)--------->RAP2.3(3)     ----------->HVH21 ----->TOE2(3)   --------->At4g35610     <---------DEAR3(1)--------->ANAC46     <---------GLK1(1) ------GT1    <---------At4g35610     --------->ANAC46    <---------RAP2.6(2)   --------->GLK1(1)----   cttaatatccatgttaagcagctccgcctccactgactccacgatggcgcctgttttattgccgccgccgatcaaggaagagatttcagtgaccagggat  6743600                                                                            <---------DEAR3(1)                                                                           <---------LBD16                                                                           <------NtERF2                                                                           --------->ATERF1(1)                                                                          --------->LBD16                                                                          <---------ORA47(2)                                                                          <---------ERF1                                                                          <---------ATERF1(1)                                                                         <---------DEAR3(1)                                                                         --------->DEAR3(1)                                                                         <---------ATERF1(2)                                                                         <---------RAP2.3(2)                                                                        --------->ATERF1(1)                                                                        --------->RAP2.3(1)                                                                        <------NtERF2                                                                        <---------LBD16                                                                       <---------RAP2.3(1)                                                                       <---------ATERF1(1)                                                                      <---------DEAR3(1)                                                                      --------->ETT(2)                                                                     --------->ATERF1(1)                                                                  --------->ALFIN1                              --------->DEAR3(1)                  <---------AtMYB61                          ------>MYB83 --------->MYB59        <---------ANAC58<------NtERF2                          --------->ZAT2                      <---------ANAC58--------->ATERF1(1)                        --------->DEAR3(1)                  --------->ALFIN1<---------ANAC46          --------->O2  --------->MYB46(3)                <---------ANAC46------>NtERF2          --------->TGA1a ------>MYB46(1)              <---------DEAR3(1)--------->ATERF1(2)          <---------TGA1a--------->ANAC46           --------->ANAC46<-----------HVH21<----------DOF2          <---------O2  <---------ALFIN1          --------->YAB1--------->ALFIN1 <------ZmHOX2a(1) ---->GLK1(1)          --------->At4g35610<---------ZAT18 --------->ALFIN1<---------RAP2.3(1)     --- ------------------->TaNAC69(2)------>NtERF2   --------->YAB1<---------MYB46(3)--------->ALFIN1------   ttcaagtattcgacgtctctgaagcaccagccccgactagttagggcatttatcacgacggtgtgggtgtggtcgccggcggaggagcttgatgttccca  6743700                                             <---------ARR11(3)                                 <---------LBD16    <-------GAMYB           <---------------AGL15   <---------ANAC58        ----------------->AG   <---------ANAC58        ----------------->AGL1<---------AHL20(2)                                <-   <---------ANAC46       <-----------------AGL1<---------AHL20(2)                               <--- ------>AtMYB61           <-----------------AG  --------->AHL20(2)          ------------>CBF  <------ --->ANAC46    <-----------RAV1(1)           --------->ARR11(3)            *TSS      ----------->GT1   ccattgcgttgatgctcttgtcgcgctaaaccaattggggaagacgagattttaatttggagaattgattttgttatggtcaatatcgagttaaactaat  6743800           --------->YAB1           -------->HAHB4          <---------ATHB12                                                              --------->DAG2          <---------YAB1 --------->AHL20(2)                                            ---------->DOF2         <---------TOE2(3)                                                  ----------->GT1      ---- --------YAB1   <---------DAG2             ---------->DOF2                 --------->DAG2       ----- --------GT1    <----------DOF2           <---------ATHB12                ---------->DOF2     ------>ZmHOX2a(1) ---ICU4--------->YAB1<---------AtLEC2------------>CBF             ------------------------>ANAC81  -   tactattcactaatgatactttttgcataaaatcgttttgatcaataaagaagaacatttttaacagaaaaactagaaaagtaattcgaaaaagtcctat  6743900                  <---------ANAC46               <---------ARR14(2)                                 <---------SPL7         <-----------GT1                                        <---------------AtSPL3     <---------RVE1(1)                                       ----------->HVH21     <---------CCA1(1)                                   --------->GLK1(1)    <---------ARR11(3)                                   <---------GLK1(1)    --------->ARR11(3)       <---------PCF2             <---------ARR11(3)                   <-------   ----------->GT1<---------ANAC58                      --------->ARR11(3)               <----------DOF2  --------->DAG2  <---------ANAC58                     --------->HSFB2a(1)   ---------->DOF2 <------- ----->YAB1  --------->LBD16*TSS                 --------->ZAT6 --------->ZAT6          <---------ANAC58 ------>TBP<---------LBD16 <---------ZAT18  --------->ANAC55(2) --------------->AtSPL3  <---------ANAC58 --------->DOF2--------->ARR14(2)--------->MYB52(1)--------->ANAC46 --------->SPL7  <----------DOF2   aaaaaaggtattttccggtttcgttttagtgggcctaatggcccatatgtaacacgaagatttctgacagtacgacttctaaagtactttgctttccttg  6744000                                                                 --------->ATERF1(1)                                                                <------NtERF2                                                                --------->ATERF1(1)                                                                ------>NtERF2                                                                <---------ATERF1(1)                                                               ------>NtERF2                                                               --------->RAP2.6(2)                                                               <---------ATERF1(1)                                                               <---------RAP2.3(1)                                                              <---------RAP2.6(2)                                                              <---------DEAR3(1)                                                             <---------At4g35610                                                             --------->At4g35610                                                             --------->ATERF1(1)                                                             <------NtERF2   <---------bZIP60(1)                                                            <---------DEAR3(2)                                                            <---------RAP2.3(1)                                                            <---------ERF1--------->ANAC46                                                            <---------RRTF1(1)                                                            ------>NtERF2 --------->ANAC58                                                            <---------ATERF1(1)                                                            <---------ORA47(2)                                                           <---------DREB2C(2)                                                           <---------At1g77200                                           --------->At5g28300--------->DEAR3(1)                  <--     <---------ETT(1)                     ----------->GT1  <---------DEAR3(1)--------->bZIP60(1) <--- <---------GLK1(1) ---------->DOF2        --------->YAB1   <---------RAP2.3(3)     --------->DEAR3(1) --ANAC58 ---------->DOF2      <---------YAB1            <-----------HVH21--------->ANAC58   <------- --ANAC58--------->AtMYB61  ----------->TGA1            --------->ANAC46 --------->SPL7<------ZmHOX2a(1)   ttgaattccgaccaaagtcgataaagagttatgacgatggacgatggtaactccgtctacgtcggcggcctcccttacgacatcaccgaggaggctgtcc  6744100                            <---------ALFIN1                           ------>ZmHOX2a(1)                      --------->DEAR3(1)                     --------->ATERF1(1)                     <------NtERF2                    ------>NtERF2                <---------RAP2.3(2)                <---------RAP2.6(2)               <---------LBD16               <---------At5g28300                                         --------------->AGL15         ----------------->AGL3                   <----------DOF2          <---------------AGL15         <-----------------AGL3     <---------TOE1(3)                     --------->TOE2(3)         ==================================================================================MADS_MADS <---------ANAC58   <---------ATERF1(1)        <-----------GT1------>ZmHOX2a(1) <---------ANAC46  <---------ARR14(2)        <-----------GT1  <---------YAB1 <---------ANAC58  --------->ARR14(2)----------->GT1      <---------ARR11(3)         <---------YAB1 -------MYB52(1)--------->ANAC46 --------->DOF5.7(2)      --------->ARR14(2)       <------ZmHOX2a(1) --------HVH21 --------->RAP2.6(3)  <---------TOE2(3)     <---------ARR14(2)     <---------TOE2(3)<-- ----HVH21    <-----------GT1    <---------MYB52(1)       --------->ARR11(3)    --------->YAB1 <-----   gtcgcgtcttctccatttacggctccgtcctcaccgttaaggttaattttctcttttcaatatcctgatttaagtttcttaattaggatgattcaaattc  6744200 <---------ANAC55(2)                                        --------->ARR11(3) --------->ANAC55(2)              ------>ZmHOX2a(2)         <---------ARR11(3) <---------ANAC46               --------->ARR11(3)         <---------GLK1(1) <---------ANAC58               <---------ARR11(3)         --------->GLK1(1) <---------ANAC58     <---------YAB1                      --------->ARR11(3) -------MYB52(1)     --------->YAB1                       <---------ARR11(3) --TEIL              --------->TOE2(3)            <----------DOF2   gtttcgtgattttgaagttccaatcttattgtatgatcttatagatgataagctttagtagatatctatgtagaaagactgaccaagtgatttagataac  6744300  Previous    Next  AGI:  At5g19950.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63540.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63540.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67825.1); contains InterPro domain Region of unknown function DUF1767 (InterPro:IPR013894) Range:  from: 6740779    to: 6743775    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g19960.1    Description:  RNA recognition motif (RRM)-containing protein. similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.2); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65599.1); contains InterPro domain RNA recognition motif, glycine rich protein (InterPro:IPR015465); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (I Range:  from: 6743928    to: 6746341    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version