Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ARR14(2)                                                                   --------->ARR14(2)             --------->ARR11(3)                                   --------->O2             <---------ARR11(3)                                 <-----------RAV1(2) ----->NtERF2--------->ARR14(2)                              ----------->HVH21                      < ------At4g35610                                           <---------ANAC58                       --- ----->At4g35610                                           <---------ANAC58                      <--- ------ATERF1(1)                       --------->REM1(1)--------->GLK1(2)             ---------->DOF2 -----DEAR3(1)                --------->AHL20(2)       <---------ARR14(2)          ----------------->AGL2 -----MYB46(3)                <---------ATHB12         <---------GLK1(2)           --------->MYB46(3) -----HVH21  <---------ARR14(2)<---------ICU4      --------->MYB52(1)      --------->MYB52(1) -------   gctgccagtattgaagatacttcaagtatccaataaatgcttcatcttcaaaataccgattctgtgccaggtctgccaaacagtaaccaaaagcagaatg  6732500 <---------------AtSPL8                   --------->TOE2(3) --------P                           <---------AHL20(2)            --------->ANAC46 -------->GT1                    <----------DOF2                   --------->ANAC58             <---- ------------AtSPL8              <---------DAG2       --------->ZAT6                       <---------At5g28300 -->GLK1(2)       --------->TOE2(3)  --------->AHL20(2)            --------->ANAC58       <<<<<<<<<<<   tggtaagtacaaaccctaagccttagaacaaatccctttttaaatctcaatttcgaacactaaaaccctaagccatagaacgaattctaaacttacagtg  6732600                                                                     <---------ARR11(3)                                                                     --------->ARR14(2)                           --------->AHL20(2)                        <---------ARR14(2)                           <---------AHL20(1)         <---------ANAC58 ------>ZmHOX2a(2)     --------         <---------ARR14(2)<---------AHL20(2)         <---------ANAC58<------ZmHOX2a(2)      <-------         --------->ARR14(2)--------->AHL20(1)  --------->GLK1(2)   <------NtERF2          <---------ANAC58        <------ZmHOX2a(1) --------->AHL20(2)  <---------GLK1(2)<-----------HVH21          <---------ANAC58 -----MYB46(3)<---------ANAC58         --------->HSFB2a(2)    --------->DEAR3(1)          <---------ANAC46 <<<<<<LFY    <---------ANAC58         <---------HSFB2a(2) <---------ALFIN1        <----------DOF2---   gatgtaagtaggattggcgagacattgaataaattcaagttccagtaagaatcgttgccttccaccgtcgggatccttgtaagtgttttttggcctgtag  6732700                                            --------->ZAT18          <---------ANAC46                         --------->ARR14(2) <---------ZAT14          <---------O2                         <---------ARR14(2) --------->ZAT14         <---------LBD16                       ----------->ARR10    <---------ZAT18        --------->MYB52(1) ->REM1(2)      ---------->DOF2        ---------->DOF2            ----------->HVH21               --- --ZAT14       --------->AHL20(2)    <---------YAB1           <-------TEIL                  <-------- ------>CCA1(2)<---------AHL20(2) --------->GLK1(2)  <------ZmHOX2a(1)--------->LBD16       ---------   agatgcgaattagataataaaagagcagatttgaagaatatgaaagtgtacaagaggaagaagatgcactcacggggatggaatttctgatgcatcatca  6732800                                     --------->ANAC58                                     --------->ANAC58  <---------------AGL15                                ----------->RAV1(2)    --------------->AGL15                           --------->ANAC58           ----------------->AGL1                           --------->ANAC46           --------------->AGL15                           --------->ANAC58           <-----------------AGL1                        <                        <---------SPL7                <---------------AGL15                      <---              --------->ANAC58--------->ARR14(2)<---------GLK1(2)                      --------->ARR11(3)              --------->ANAC58<---------ARR14(2)<---------ARR14(2)                     <---------ARR14(2) ------>MYB46(3)       <---------MYB52(2) <---------ARR14(2)                           --------->ARR14(2) -ICU4----------->RAV1(2)--------->MYB52(1)     --------->ARR14(2)            --------->ETT(2)*TSS  - >YAB1------>ZmHOX2a(1)--------->MYB46(3) --------->ARR14(2)   <------ZmHOX2a(1)      <------ZmHOX2a(1)   cccatctcctctggcgaagccatgaacgaacggaacctgaagcaaatttggattctcccaatagaggaatcagacggaggtagacggaggattttggttc  6732900                                                                                          <---------TOE2(3)                                                                             --------------->AtSPL8                                                                             <---------------AtSPL8       <------------CBF     ---------->DOF2                           ----------->GT1    <---------At5g28300 ---------GLK1(1)           --------->MYB52(1)<---------YAB1         ----------->GT1    --------->MYB52(1) ------YAB1     <---------TOE2(3)          --------->ARR14(2)      <------------CBF     <-----------GT1 -------->GLK1(1)----------->GT1           <---------ARR14(2)---------->DOF2 <---------ICU4   tgatttctgaattgaattttggttataaaccaaaggcctaaaccggttctgaatgcaaatagaaaaagagattggaaaattagtacaaaattacggttta  6733000                                                             --------->At4g35610                            ---------->DOF2      <---------MYB52(1)                       --------->HSFB2a(2)     ----------->GT1  --------->At4g35610                    <-----------GT1     ---------->DOF2      <---------At4g35610                 <---       <----------DOF2 <---------HSFB2a(2)  ------------>MYB.PH3(1)            ------>NtERF2  <------   agaagcggtctttttttttttttttccacaagaagcggtcttaaaagaaccgttatactcggtagcagatggagaagtctctgcccaaacttggagttac  6733100                                                                                 <------ZmHOX2a(1)                                                                      <---------YAB1  --------->ARR14(2)                                                       <---------ANAC58         <----------ID1                      <------NtERF2             <----------DOF2   <---------GLK1(2)   --------->ARR11(3) -------DOF2<-------TEIL                   ------->TEIL<---------ANAC58  ------->TEIL <---------ARR14(2) -----GT1 <---------GLK1(2)             <---------YAB1 --------->ANAC55(2) --------->YAB1   tttacattcaaagattcacttggtggcatttttagtcatgttatgaatctctttcttacttatctcaagattatgaatcacaaggacaaatcttgaattt  6733200                                                                                                  <--                <----------DOF2                              <---------REM1(1)                <------             --------->GLK1(2)                              --------->ARR11(3)           <---------MYB46(3)            <---------GLK1(2)   ---------->DOF2    <---------ATHB12            --------->AtLEC2 <----          --------->LBD16 --------->YAB1          ------>MYB83                 <---------YAB1 <------        <---------LBD16  <---------ATHB12         ------>MYB46(1)       <----------DOF2 <---------YAB1       ------->TEIL    --------->WOX13(1)   ----------->HVH21<-----------RAV1(1)        <---------TOE2(3)   tgaaacatggaccggaatctttatgcaatcatacaaaagtttttttgtgaccaatcgatatagatgttgcaactctttgtcatgctaactatggttgagg  6733300                     <------ZmHOX2a(1)                                                             --              <-----------ARR10                                                       --------->LBD16              --------->ARR14(2)                                                     --------->LBD16         ----------->GT1                                                             --------->ANAC46   <---------At4g35610                                                               --------->ANAC58 -------YAB1  <---------ARR11(3)                                                     --------->ANAC58 ---TOE2(3)   <---------ARR14(2)                                                    --------->LBD16-- --ZmHOX2a(1) --------->ARR11(3)                         --------->ZAT14            <---------LBD16<- ---TOE1(3)   --------->GLK1(2)     <---------ATHB12     <---------ZAT14 --------->ICU4       -------   attatagcagacagaaaatctgaggacatttggctccaatgagttggccctcaaaaatgtatactgtacattgtaatgttgtaatccccgcaaaatgtga  6733400  Previous    Next  AGI:  At5g19910.1    Description:  SOH1 family protein. Identical to Mediator of RNA polymerase II transcription subunit 31 [Arabidopsis Thaliana] (GB:Q8VYB1); similar to unknown [Picea sitchensis] (GB:ABK24720.1); contains InterPro domain SOH1; (InterPro:IPR008831) Range:  from: 6731187    to: 6732894    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g19920.1    Description:  transducin family protein / WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G50970.1); similar to unknown [Populus trichocarpa] (GB:ABK95770.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 6733218    to: 6737375    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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