Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->ZAT6                                       <---------------------WRI1           <------MYB83         --------->LBD16              --------->MYB52(1)             --------->MYB52(1)        --------->HSFB2a(2)      --------->DAG2   <---------------AtSPL3    <------MYB46(1)        <---------HSFB2a(2)     ---------->DOF2<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------LBD16    <---------AtLEC2--------->At5g28300      --------->DOF5.7(2)   <----------DOF2      <---------HSFB2a(2)<--------P  --------->ANAC58   <--------P<---------ARR11(3) ------ARR11(3)        <---------LBD16<---------DOF5.7(2) ------->TEIL   <---------MYB52(1) >At4g35610      --------->At4g35610 ----------->HVH21 --------->ANAC58 ------->GAMYB<------ZmHOX2a(2) -At4g35610      <---------At4g35610 --------->WRKY12 --------->SPL7 <---------DOF5.7(2)   atcttctttcccagaaatgagctgctctggatggaaaagttgacggtaagtaccagtacgaacttcgtcgataacggtaggctcgagatcaacgaagaca  6684200                                                                            --------->ZAT6                                                                     --------->ZAT14                          <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->REM1(1)                      <                    ----------->RAV1(1)                    ----------->RAV1(1)          ------->GAMYB                 --------->ANAC46                     <---------ANAC46     <---------YAB1  ----------                --------->ANAC46                  ------->TEIL    ------>MYB46(1)      --------->ANAC58           <---------ANAC58                    --------->ANAC58   ------>MYB83         --------->ANAC46           <---------ANAC58                    --------->ANAC46 --------->AtMYB61      --------->ANAC58 --------->STY1(1)--------->ZAT2    ---------->DOF2 <---------ANAC46 <---------ZAT14--------->MYB46(3) <---------STY1(1)<---------ZAT2---------->DOF2--------->ANAC58 --------->MYB46(3)----------->RAV1(1)   gccctagggacatgcttcccagcaccagtctcgctaaagaaagtattgaacgcatcgtgtgcaacaccaactgtagtatcactgcaacaacgcaaaagac  6684300          <---------ARR11(3)                                                   --------->ZAT2          <-----------ARR10                                                 --------->SPL7          --------->GLK1(2)                                                <---------MYB52(1) ------->TEIL     <---------ARR14(2)                                       <---------SPL1(1) --------->ARR14(2)    --------->ANAC46                                   <---------SPL7 <---------ARR11(1)  ----------->RAV1(1)          <---------TOE2(3)      <---------ANAC58 <---------ARR14(2)<------ZmHOX2a(2)              <---------TOE1(3)      <---------ANAC58 ---------CCA1(2) --------->ARR14(2)     ----------->GT1            <---------ICU4             ------ >DOF2    --------->ARR11(3)            --------->DAG2          <------NtERF2  <---------ZAT2  <-----   tcgtatctcaaaaatcttccgatccacagaaacagagtacaaagagtgaattagggtttatacctcggcatcattccgtccggctggattccatgttcga  6684400                           <---------ZAT2                           --------->ZAT2    <---------TOE1(1)                        ----------->HVH21    <---------TOE2(1)                        <---------ETT(1)  <---------WRKY18(1)                    --------->GLK1(1) --------->ZAT2                   <-----------ARR10                    <---------GLK1(1) <---------ZAT2                  <---------CCA1(2)                --------->ANAC46  ------>ZmHOX2a(2)            <---------GLK1(1)      <---------At4g35610  ----------->RAV1(2)               --------->ATHB12                     <--   ---------->DOF2 ------->TEIL  <------ZmHOX2a(2)          <---------YAB1                        <-- --->HSFB2a(2)  --------->ANAC58--------->ARR14(2)      <---------ANAC58                  --------->TOE2(3) ----HSFB2a(2)  --------->ANAC58<---------ARR14(2)      <---------ANAC58                  --------->TOE1(3)   gacagtaaagctcccaacacgaatttccgacctggatcccagcttgtccgatgtgaatgcttatgatttctcgcatcttctctcagtagaaaccctaatt  6684500                                                         ------>ZmHOX2a(2)                                                         ====================HOX2a_HOX2a                                                        =====================HOX2a_HOX2a                                                        <------ZmHOX2a(2)                                                       --------->AGP1  <---------ICU4                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                                       <---------ARR14(3)                                                       --------->ARR14(2)                                                       --------->ARR14(3)                                  ==============================HOX2a_HOX2a                                  =============================HOX2a_HOX2a                     --------->SPL7            --------->ALFIN1      <---------MYB59                    --------->MYB52(1)        <-----------HVH21    ---------->ID1          <----------DOF2       <---------TOE2(3)      <---------ARR14(2)         <---------YAB1    -    --------->ARR14(2) ----------->GT1      <---------DEAR3(1)    <-----------GT1<---------ARR11(3)<- -------ANAC58     ----------->HVH21       <---------ZAT14   <----------DOF2     *TSS <-----------RAV1(1) -------ANAC58     <---------SPL7 <------ZmHOX2a(1)  ----------->ARR10------>ZmHOX2a(1)       <------   tcgagcgattcgcttcttcgacggacggagaattgaggaaatgagagcggtgagcgagatcttctttttttcctaatttccatgatttttgtgggaaatt  6684600                                     <------NtERF2                                     ------>NtERF2                                    --------->ANAC58                                  <---------ATERF1(1)                                               -                                  --------->ATERF1(1)                                               <                                 <---------SPL7                                                     -                                 <---------ARR14(2)                                             -----                                 <---------PCF5                                               <------                              <------MYB83                                                    -------                              <------MYB46(1)                                              <-------TEIL                            <--------P                                                    --------->ARR14(1)                           <---------ANAC58                                               --------->CCA1(2)                           <---------ANAC58                                               --------->GLK1(2)                          <---------MYB46(3)                                           ----------->ARR10                          --------->ATHB12                                          --------->TOE1(2)    <---------AHL20(2)  <---------WOX13(1)                                         --------->ANAC55(2)    --------->ATHB12   <------------CBF                                            <---------ANAC55(1)   <---------AHL20(2) <---------ICU4--------->ANAC58                               <---------ANAC55(2) -------->AHL20(2)    --------->ATHB12        ----------->HVH21                    <---------ANAC58 < --------YAB1        <---------YAB1--------->SPL7         <----------DOF2          <---------ANAC58 < ------CBF      --------->CCA1(2)--------->ARR14(2)      <----------DOF2          <-------TEIL<------   gattatttattgaatgagatttgataattggttggggtccgccaagttgtgacagcctgcctttgggactgggcatagacaaaatacgtgagattcgatc  6684700         --------->HSFB2a(2)         <---------HSFB2a(2)       --------->CCA1(2)       <------ZmHOX2a(2)      <---------ARR11(3)      --------->ARR11(3)      --------->ARR14(2)      <---------ARR14(2)      <---------AGP1      --------->AGP1                                                                                -  ------>ZmHOX2a(2)                                                                               ---  <-----------------AGL2                                                                          --- -------->ARR14(2)                                                                               ---- ---------AGP1                                                                ----------->GT1   ----- -------->ARR11(3)                                               <---------MYB52(1)             ----- ->ZmHOX2a(2)   --------->ALFIN1        <-----------GT1 --------->ANAC55(2)   <---------ANAC46 ------ ---AGP1------>ZmHOX2a(2)          --------->AHL20(2)  <---------TOE2(3)     --------->MYB59   ------ -->ARR14(2)  <------MYB83     ----------->GT1  --------->LBD16 --------->TOE2(3)            -------- ---------ARR11(3)         <-----------GT1   --------->MYB52(1)<---------ANAC58           --------->TOE1(3) ---------ARR14(2)<------NtERF2--------->LBD16<---------LBD16  <---------ANAC58     <---------AHL20(2) ---ARR14(2)  <------MYB46(1)<---------LBD16 -------->P--------->MYB59 <---------YAB1--------->YAB1 <   tggatctagatctggaaggtgtcgatttttatccggtttaaataacttaccggaatttaggtatttcgttagtatgagtgaggtaaataatagcttaacc  6684800 -------->TOE2(3) --->MYB83 --->MYB46(1)                                                                                      -- ----->ORA47(1)                                                                                <----- ---->DEAR3(1)                                 --------->ATHB12                                <----- -->GAMYB                              --------->AHL20(2)                                     ------- --->DEAR3(2)             <---------TOE1(3)   <---------YAB1                           ---------->DOF2 --->MYB46(3)    ----------->GT1   <---------MYB46(3)   <---------YAB1      --------->ANAC46  ------- ->MYB52(1)<---------YAB1 <---------TOE2(3) <-----------GT1   <------ZmHOX2a(1)  --------->MYB52(1)<- ---------MYB59 ----------->GT1    ----------->GT1 <---------MYB46(3)       <----------ID1    -------   gacctaaatcgatattataggttaaattagggtttagtggtttaaataactattggttatagtaggatgtttttgtaagcgccaaacagaaaagaaacgt  6684900   <---------TOE2(3)                               <---------AHL20(2)                ------->MYC3   <---------TOE1(3)                               --------->AHL20(2)         --------->TOE2(3) ------->ANAC55(2)                              <---------AHL20(2)           --------->ANAC55(2) ------HVH21                           <---------ZAT18                       --------->ANAC58 ------TGA1                 <---------GLK1(2)  --------->AHL20(2)            <---------ANAC55(2) -->ANAC58            <---------ARR11(3)       <---------AHL20(2)            --------->ANAC46 -->bZIP60(2)         <---------GLK1(2)--------->ZAT18 --------->AHL20(2)    --------->ANAC58   <---- --------ANAC55(2)    --------->ARR11(3)    --------->AHL20(2)               ----------->GT1    ----- -->ANAC58 <----------DOF2<---------YAB1    <---------AHL20(2) --------->TOE2(3)     <-------MYC3----   catgtaaggttgtctttgttataagattttgattctcttagtgcatttatttattaattaacttacataaatattgactacgtaaaacgtgttttcaaga  6685000           <---------ARR11(3)      ------>ZmHOX2a(1)     --------->YAB1                <----------DOF2 -----ARR11(3)            --------->LBD16                  --------->YAB1                ----------->GT1 ---->ARR14(2)          <---------LBD16                 ----------->GT1       <---------AHL20(2) ----->CCA1(2)         ------->GAMYB                 <------ZmHOX2a(1)       --------->AHL20(2)   tttgaaatcacaagttctgagataaccccgtataatccttttaatgacataagtaggagaataaaaatttgcaaaactataaatttgtagaatgaaaaat  6685100  Previous    Next  AGI:  At5g19770.1    Description:  TUA3 (tubulin alpha-3). Identical to Tubulin alpha-3/alpha-5 chain (TUBA5) [Arabidopsis Thaliana] (GB:P20363); similar to TUA2 (tubulin alpha-2 chain) [Arabidopsis thaliana] (TAIR:AT1G50010.1); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to TUA4 (tubulin alpha-4 chain) [Arabidopsis thaliana] (TAIR:AT1G04820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22082.1); similar to alpha tubulin-1D [Triticum aestivum] (GB:ABD92942.1); similar to tubulin A [Glycine max] (GB:AAX86047.1); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, GTPase; ( Range:  from: 6682495    to: 6684581    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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