Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ICU4                                                           <---------AHL20(2)                                                       <---------AHL20(2)                                                       --------->AHL20(2)                                                       <---------YAB1               <---------ZAT14                        <---------AHL20(2)               --------->ZAT14                    <---------AHL20(2)            --------->LBD16                       --------->AHL20(2)       <---------GLK1(1)                    <---------ANAC46       --------->GLK1(1)                  <------MYB83--------->AHL20(2)      <---------ICU4                      <------MYB46(1)  --------->AHL20(2) --->DOF2 <---------LBD16  ------->TEIL <---------WOX13(1) --------->ATHB51 -------->AGL1--------->ALFIN1         <---------GLK1(2)  --------->ICU4            --------->CCA1(2)   gcatgtaagaattccggtgtagtccaatgtattttgaaacagattggtgtatttattttaattattttcatatgagtttcaaaacgatacaagtcttgtt  6673500                                                   <-------GAMYB                                                  <---------MYB46(3)                                                <---------ANAC46                                             --------->ALFIN1                                             <--------P                                            <-------GAMYB                                 <---------ICU4<------MYB46(1)                      <----------DOF2     <---------TOE2(3)                     <---------DAG2    <<<<<<<<<MYB98  <---------ANAC46                     --------------->AGL15<---------TOE1(3)                  <---------YAB1         <          <---------LBD16       <---------YAB1--------->ALFIN1            --------->AHL20(2)      <--         ----------->RAV1(2)    --------->ICU4<---------AtMYB61           <---------AHL20(2)     <---        -------->P<-----------GT1--------->YAB1<------MYB83  <---------AHL20(2)        <---------YAB1     <---------MYB52(2)    --------->ANAC55(2)<---------MYB46(3)      --------->ICU4   --------->ICU4   cagacaaactaacctggattttaccttttatgtaataataagttagggttgggggttgtgttttaaaatgacataatttatcagtggtcatttttgtatt  6673600                                            ----------->HVH21                                          --------->At4g35610        ----------->HVH21      --------->ATHB12      ----------->RAV1(2)     <---------AHL20(2)               --------->YAB1  <---------ALFIN1            <---------AHL20(1)               <---------AHL20(2)  --------->ANAC46            --------->AHL20(2)    <---------AHL20(2)    --------->ICU4 ---------ALFIN1              --------->AHL20(1)   --------->AHL20(2)  --------->AHL20(2) ---------GT1      --------->DAG2         <---------At4g35610  --------->AHL20(2)      <---------YAB1 --------GT1      ---------->DOF2      ---------->DOF2<---------TOE2(3)<---------AHL20(2)   ttccactcccctgaaggctgaaaagtgtgcattttattggtaaaagctgacaaattaatgttcaattatatgtttaattagtaagactgatgatatcaag  6673700                                               --------->ZAT6                                     <---------AHL20(2)                                     <---------AHL20(1)                                     --------->AHL20(2)                                    --------->YAB1                                                ---                                   <---------YAB1                                                 ===                                   <---------AHL20(2)                                             ---                             <------MYB83 --------->YAB1 --------->TOE2(3)                       ----                             ----------->GT1 <-----------GT1                                     ----     --------->YAB1          <------MYB46(1)<-----------GT1                                     -----     <------ZmHOX2a(1)     --------->ALFIN1<---------AHL20(2) --------->ZAT6                   ------    ----------->GT1    ---------->DOF2<---------YAB1  ----------->RAV1(1)<----------DOF2       <-----   aagagaaggataatacaaaaacttggaaagtgggtatattataattttaacacttccaacattagcactaaaaaactttatatgtttgtcacaaatggga  6673800                                                                                                    <                                                                                                    -                                                                                                 <---                                                                                                =====                                       <---------ICU4                                           ----- -------------->AGL3                   --------->YAB1                                           <---- ==================================================================================================== -------------->AGL2                  <---------ATHB12                                         <----- ----->ANAC58               --------->ANAC55(2)                                         ------>ZmHOX2a(1) ----->ANAC58            <---------AHL20(2)                                        <---------GLK1(2)< ---->PCF2      ----------->GT1       ------------>CBF                   <---------TOE2(3)     ------ --->TCP15(1)<---------ANAC46  ------->TEIL                             ---------->DOF2 ============= ----PCF2    <---------bZIP60(2)   ------>ZmHOX2a(1)     ----------->HVH21----------->GT1  --------->LBD16   cccaaaatcagtatgatgtggtaacaatttatgtatcctaatcaatattctaagtgaaggtgacatactgacattaaagtaaaaagattcctccgaagat  6673900  <------------CBF <------------ATHB5 --------->ATHB51 --------->ATHB12 <---------ICU4                                 -------->P <--------ATHB1                                 ------>MYB83 >>>>>>>>>>AGL20                                ------>MYB46(1) -------->ATHB1                               --------->AtMYB61 >>>>>>>>>>AGL22                              ------->GAMYB >>>>>>>>>>AGL24                             <---------MYB55(2) --------->YAB1                              --------->MYB46(3) ---------ATHB12                             <---------MYB52(2) -------->ICU4                              --------->ANAC58 --------------AGL3              --------->MYB52(1) ==========================HOX2a_HOX2a      --------->ANAC46 ------->CBF                     ----------->RAV1(1)       <---------ICU4 --ZmHOX2a(2)       ------>ZmHOX2a(1)       --------->ANAC58 ==============MADS_MADS--------->YAB1    --------->MYB46(3)                                      <-- ----ARR11(3)      --------->TOE1(3)    --------->ANAC58  --------->ICU4                          --- ---------ATHB51   --------->TOE2(3) --------->At4g35610  <---------YAB1                          --- --->ARR11(3)   <---------ARR14(2)  ------->GAMYB        <---------TOE2(3)                       <--- ==HOX2a_HOX2a  --------->ARR14(2) *TSS --------->ANAC58--------->YAB1                        -------   caataattgggaacatcaaatccttatcagaaaaacaacagcaaacaaccaactccattgatgattatctaagaagaagccccattgatgtcgaaatcaa  6674000 -------ARR11(3)                                                                       <---------At4g35610 ------>ARR11(3)                                                    --------->ZAT6     --------->At4g35610 ------>GLK1(2)                    ------>ZmHOX2a(1)         ---------->DOF2    <---------ARR11(3) ------GLK1(2)        <---------DAG2                        --------->AtMYB61<-------PIF5 -->YAB1              <----------DOF2                      --------->ANAC46  ------->PIF5  <---------ALFIN1   aatctctagccttcgtaatcgctgctttatcttactccttcttctccctcttctcttctccaccaaagtctcactaccacgagctcttcatctccacttc  6674100                                               <---------ATERF1(1)                                               ------>NtERF2                                              --------->DEAR3(1)                                              --------->RAP2.6(2)                                              --------->RRTF1(3)                                              --------->RRTF1(2)                                              --------->RAP2.3(3)                                              --------->RAP2.3(2)                                              --------->DREB2C(2)                                              <---------ALFIN1                                             --------->DEAR4(2)                                             --------->RAP2.3(1)                                             --------->DEAR3(2)                                             --------->ORA47(2)                                             --------->ERF1                                             --------->ATERF1(1)                                             --------->RRTF1(1)                                             <------NtERF2                                            <---------ATERF1(1)                                            ------>NtERF2                                           --------->ANAC46                                         --------->ANAC58                                         =================================================bZIP_DOF                                         --------->ANAC58                                         <---------TGA1a                                         --------->ANAC46                                         --------->TGA1a        <-------TEIL                --------->LBD16        <---------ALFIN1         --------->SPL7       <---------At4g35610               <---------ANAC58      <-----------HVH21     <---------ANAC46          --------->At4g35610               <---------ANAC58  <---------ALFIN1     <---------REM1(1) <---------WRKY12    ------>NtERF2                --------->ANAC46--------->RAP2.3(3)    <---------WRKY38(1)   ----------->HVH21           --------->AtMYB61<------NtERF2<---------DEAR3(2)      <---------LBD16   --------->ANAC46            <---------ALFIN1--------->ABI4(1)<---------ZAT14   <---------At4g35610   <---------ETT(1)         --------->AtMYB61--------->RAP2.6(1)--------->ZAT14---------->DOF2   cttctccgacaacgcttccgtcgctctaaacctccacaccctcacgcgccgccctcatgtagccggtacagtggccaacgctgaagcagcggaatatgtt  6674200                                        <---------ANAC58                                --------->ANAC58                                                 <---                                --------->ANAC46                                            ------>NtERF2                                --------->ANAC58                                           --------->At1g77200                                <---------TGA1a                                            <---------ETT(1)                                ======================================MYC_MYB              ----------                                --------->TGA1a                                            --------->DEAR4(1)                  --------->ZAT14   <-------GAMYB                                          --------->RAP2.3(3)                  <---------At4g35610   <---------ANAC58                                   --------->DEAR3(1)                  --------->At4g35610<---------MYB52(1)                                    --------->DREB2C(2)               ------>ZmHOX2a(1)============MYC_MYB                                   --------->MYB52(1)           <---------ALFIN1     --------->bZIP60(2)                          <----------DOF2---------          <---------At4g35610   <---------O2                                 --------------------->WRI1        <-----------GT1         --------->O2                 -------->P    <----------DOF2--------->RAP2.3(1)   cgctctgttttcacctcctctgctctcaaatcacacgtcgttgcttaccaagtgtctctaacttacccagttcatcgctctttggtactaacgccgacag  6674300                                                                                                  <--                                                                                                  ---                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                      --------->CCA1(2)                                                                                      --------->ARR14(1)                        <---------HSFB2a(2)                                          --------->ARR11(1)                   <---------ANAC58                                                  --------->ARR14(2)      --------->ANAC58  --------->HSFB2a(2)                                 <---------------AGL15 ---      --------->ANAC58 <---------ANAC46                                     <---------DAG2        <--    ---------->DOF2<---------ANAC58                               --------->ALFIN1   <---------ARR14(2) ------GLK1(2)  <----------DOF2        <---------LBD16       <---------ATHB12   <---------AtLEC2<---- ->HVH21  --------->WOX13(1)   --------->ANAC58        <---------YAB1       <----------DOF2   <------ -->RAV1(1) <---------ATHB12   --------->ANAC58     ------>ZmHOX2a(1)      <-----------------AGL3----   actctgcaaagccaatcactttcttgctggaacaagaaaaactcggagacaatccttatgctaatgaagtgatgcctacttttcatggatacgctaagtc  6674400  Previous    Next  AGI:  At5g19740.1    Description:  peptidase M28 family protein. similar to AMP1 (ALTERED MERISTEM PROGRAM 1), dipeptidase [Arabidopsis thaliana] (TAIR:AT3G54720.1); similar to hypothetical protein OsJ_003322 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13497.1); similar to hypothetical protein OsI_003627 [Oryza sativa (indica cultivar-group)] (GB:EAY75780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65437.1); contains InterPro domain Protease-associated PA (InterPro:IPR003137); contains InterPro domain Peptidase M28; (InterPro:IPR007484); contains InterPro domain Transferrin receptor-like, dimerisation (InterPro:IPR007365) Range:  from: 6673935    to: 6676861    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version