Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                  <--                                                                                             <-------                                                                                             <-------                                                                                            <--------                            <-------TEIL                                                    <--------                        <---------------AtSPL3                                            --------->ATHB12                        <---------------AtSPL8              --------->ARR14(2)            <---------ICU4                        <---------KAN4(2)                   <---------ARR14(2)           <---------YAB1                 --------->ALFIN1            --------->ANAC58                            --------->ICU4               --------->ALFIN1     <-----------GT1        <------ZmHOX2a(1)           --------->YAB1           ---------->DOF2  ------->TEIL     --------->ANAC58                          <---------ICU4       ----------->GT1  --------------->AtSPL8           <---------TOE2(3)      <---------MYB46(3)<--   aatagaagaaggttaaagtgtgtgagaatgtacatatataacaatgcaggcattggttttaggatttggacatgagacttggtgtttgatcatgattgtt  6606300 -------ANAC46 -------ANAC58                                                 --------->AHL20(1) --MYB46(3)        ------>ZmHOX2a(1)                           <---------ARR11(3) ----RAV1(1)       <-----------RAV1(1)                         --------->ARR11(3) -WOX13(1)    <---------ANAC58                                 <---------AHL20(1) -YAB1  <---------YAB1                                   <-----------GT1             ---------->ID1 -------ANAC58<---------ANAC58                        ----------->GT1            <----------DOF2   gcttgttttgactattgcttcctgttgttttttctaagaaggaagtgtgattcagtgtgtaacaatattttggtatttttgttctttggtgttttgtatt  6606400                                                                                                    -                                                              <---------ZAT18                       <                                                              --------->ZAT14                  <-----                                                   <---------YAB1                              ------                                                   --------->ICU4                              ------                                                 <---------ICU4                                <-----                          --------->MYB52(1)     --------->YAB1         --------->YAB1         <-----             ----------->RAV1(1)              --------->YAB1  --------->ZAT18                  ------            --------->REM1(1)          <---------At4g35610   <---------ZAT6                 --------- <---------ANAC46        ------>ZmHOX2a(1)  <---------WOX13(1)<---------ZAT14      --------->TOE2(3)-   gtaacgtctaatctacaacattgtttcctaatggattttgaagctcattgataatgactagtagtgtagtagtattgtaatgaaacattatttgatgacg  6606500 ---------->GT1                                                                                    -- ---------ANAC55(2)      <---------YAB1                                                           <-- ----ETT(2)            <-----------GT1                                  <---------MYB52(1)       ---- --->TGA2(1) <---------ANAC58                                          <-------GAMYB             <--- --->ETT(2)  <---------ANAC58                   --------->LBD16       ----------->GT1         <xxxxxx ----TGA2(1) <---------ANAC46                 <---------LBD16        <-------TEIL            <------- ----bZIP60(1)    --------->YAB1             ------>MYB83          <---------ARR14(2) <---------AHL20(2) --->bZIP60(1)   <---------YAB1              ------>MYB46(1)       --------->ARR14(2)--------->AHL20(2) -->TGA1   <---------MYB46(3)    ------>ZmHOX2a(2)           <---------ARR14(2)      <---------AHL20(2) -------->ANAC55(2) <---------YAB1      <-----------GT1  <---------TOE2(3)--------->MYB52(2)<--------   acatgtaatttagtggtttgtgataataccattgatctgtgtttaccatccggactattcaggtattcgggtccgttatttggatttttaaatttttcgg  6606600                                         --------->GLK1(1)                                  --------->ARR14(2)                    <---------ANAC46     <---------GLK1(1)            <---------MYB52(1)    <---------ARR14(2)           <------MYB83         <---------DEAR3(2)           <------MYB46(1)      <------MYB46(1)  <---------ATHB12          --------------->AtSPL3<---------MYB46(3) ---->ZmHOX2a(2)    <---------ANAC58    --------->ARR14(2)        ------>ZmHOX2a(2) ----ZmHOX2a(2)     <---------ANAC58 --------->HSFB2a(2)        --------->ARR11(3) ----->ARR14(2)  <----------DOF2<------MYB83     <---------AHL20(2) ------ARR14(2) <---------DAG2 <---------DEAR3(1)<---------ATHB51<---------GLK1(1) xxxxxxxxxxsmallRNA(i)        <--------P<---------ARR14(2)      <---------ARR11(3)     <---------MYB46(3) --LBD16  --------->MYB46(2) <-----------HVH21   --------->AHL20(2)   <----------DOF2  ----------->GT1 ---GT1   --------->MYB59<-------TEIL<---------HSFB2a(2)  <----------DOF2 --------->ANAC46       ----   atcgggtttagttcggtacctttcgggttcgggtcggttctggatatccaaataattcttctttttgatctcctttactcaacatttagtggttaaaaca  6606700                                 --------->LBD16                                --------->ATERF1(2)                                --------->DEAR3(1)                               --------->ATERF1(1)                    <------MYB83                               --------->DEAR3(2)                     <------MYB46(1)                               <------NtERF2                        <--------P                              ------>NtERF2                         --------->ALFIN1                              --------->MYB52(1)                    =================================                              <---------ATERF1(1)                  <-------GAMYB                             --------->DEAR3(1)                    <---------SPL7                             <---------ALFIN1                      <------NtERF2                            <---------MYB55(2)                     ==================================                       --------->ARR14(2)                         <---------DEAR3(2)                -                 --------->ARR14(2)                               <---------MYB46(3)                <                 --------->GLK1(2)                               <---------RAP2.6(2)      --------->AtMYB61            ----------->GT1 --------->MYB46(3)                   <---------ANAC46        --------->MYB46(3)           --------->DAG2  --------->At4g35610                  <------NtERF2           ------>NtERF2         ---------->DOF2<------ZmHOX2a(2)                      <---------ERF1         --------->MYB46(3)   --------->MYB52(1)  <---------ARR14(2)                     <---------DEAR3(1)      --------->ATERF1(1)  *TSS------->GAMYB<---------LBD16       <---------TOE2(3)    --------->ALFIN1       <---------ATERF1(1) ----->ANAC46    <---------ARR14(2)<---------DEAR3(1)      --------->ALFIN1         --------->PCF2---   cagaacaacggaaaaggcaaatcgggatcagccaccggcgatgaaggaagacatggataagatggtggcggtagggctcgtatggggagccaccaatgct  6606800                                                                                           --------->ICU4                                                                                  <------NtERF2                                                                                  --------->LBD16                                                                                 ----------->RAV1(1)                                                                                 --------->RRTF1(3)                                                                                 --------->RAP2.3(2)                                                                                 --------->RRTF1(2)                                                                                 --------->DEAR3(1)                                                                                 --------->RAP2.6(2)                                                                                 --------->RAP2.3(3)                                                                                --------->RRTF1(1)                                                                                --------->RAP2.3(1)                                                                               <---------ATERF1(1)                                                                               ------>NtERF2<--------                                                                               --------->At4g35610                                                                               --------->LBD16            <---------ZAT18                                                   --------->ANAC46           <---------ANAC58                                                   --------->DEAR3(1)           <---------ANAC58                                                  ------>ZmHOX2a(2)          <------NtERF2                                                     <------ZmHOX2a(2)        --------->ALFIN1                                                    --------->ARR14(1)      <---------TGA1a                                                       --------->CCA1(2)      --------->TGA1a                                                      <---------ARR14(2)      --------->O2                                                         --------->ARR14(2)      =====================================bZIP_DOF                        --------->AGP1<---------ICU4      <---------ANAC46                                              ===============HOX2a_HOX2a      <---------O2  <---------LBD16                                 ================HOX2a_HOX2a    <-----------HVH21--------->LBD16                             ==================HOX2a_HOX2a  ------>ZmHOX2a(2)<---------ANAC46                  --------->GLK1(2)     <---------GLK1(2)--------- ===============MYC_MYB                              <-----------ARR10    <---------At4g35610 <------ ===============MYC_MYB         ---------->DOF2     <---------GLK1(2)    ----------->ARR10 <---------YAB1 -------->ARR14(2) ----------->RAV1(2)            ------->GAMYB  ===================HOX2a_HOX2a ---------ARR14(2) <---------ANAC58            ----------->RAV1(1)  ------>ZmHOX2a(1)    --------->YAB1 -------->HVH21    <---------ANAC58         --------->HSFB2a(2)  ------>ZmHOX2a(1)------>NtERF2   ctgatccgtcgtggcgctcttgcctgggataaaacaaagtcttcttcgacaacagaatctcattctcctcctcttcagatccgccgcaaaatcatgattg  6606900                                                                            <---------GLK1(2)                                                                         ----------->RAV1(1)                                                                         <---------ALFIN1                                                                       ------>NtERF2                                                                       --------->LBD16                                                                      --------->DEAR3(1)                                                                      --------->ANAC46                                                                      --------->ANAC58              --------->WOX13(1)                                      --------->ANAC58     ------>NtERF2                                                  ------>NtERF2    ----------->HVH21                                              --------->DEAR3(1)   --------->LBD16           <---------HSFB2a(2)                   <---------ALFIN1   ------>NtERF2        ------>ZmHOX2a(1)                         --------->ATERF1(1)  --------->ANAC46    <-----------------AGL1                     <---------ATERF1(1) <---------LBD16     ------>ZmHOX2a(1)        <----------DOF2    ------>NtERF2 -ICU4      ===================HOX2a_HOX2a   <---------ANAC58   --------->ANAC46                 ---- >ATHB12    ================HOX2a_HOX2a      <---------ANAC58   --------->DEAR3(1)               ---- ---WOX13(1)<------ZmHOX2a(2)--------->HSFB2a(2)   ------>ZmHOX2a(1)<---------ATERF1(1)      <-------   ctctccgcgactggatcaatctcctcctcttctggcaatactcaattcctttcctcataaacctctccgcctccgccacattcttcgcccttctcagtca  6607000                                                                   <---------------AGL15                                                                  <-----------------AGL2                                                                  <-----------------AGL3                                                                  ----------------->AGL3                                                                  ===================================                                                         <----------DOF2                                                      --------->DEAR3(1)                                                      --------->RAP2.3(2)                                                     ===============================MADS_MADS                                                     <-----------------AG                                                   ------->GAMYB  ----------------->AGL1                              --------->ANAC58     --------->DEAR3(1)                              --------->ANAC58    --------->ATERF1(1)                            --------->MYB52(1)    --------->DEAR3(2)                          <---------MYB52(2)      <------------AtMYB77                       --------->WRKY38(1)        <---------MYB55(2)<---------------AGL15                     <---------At4g35610          --------->MYB46(3)=================================                     --------->LBD16             <---------ATERF1(1)------>ZmHOX2a(1)                    <---------ANAC46          ------>NtERF2       ------>ZmHOX2a(2)                   <---------LBD16           --------->ANAC46    <------ZmHOX2a(2)                 <---------ARR14(2)          --------->RAP2.6(2)--------->ARR11(3)                 --------->ARR14(2)         <---------LBD16     --------->ARR14(2)                 <---------MYB52(1)    --------->TOE2(3) <---------DAG2       --------->ANAC58                <---------RAP2.6(3) <---------ALFIN1 --------->DEAR4(2)       ----------->ARR10     <---------CCA1(2)<---------MYB52(1)<----------DOF2------>NtERF2<----------DOF2                <- ----->ANAC58   <---------SPL7--------->ANAC46--------->LBD16   <---------ARR14(2)                 -- ----->ANAC58  <---------ANAC58    --------->MYB46(3)--------->RAP2.3(1)      --------->ANAC58    <-- ----HVH21     <---------ANAC58    <---------ALFIN1--------->ANAC46--------------->AGL15          <--   cgctcccatctctcttgccgttccggtgactaacgccacaacctttgccgcaaccgccgcttttgggatccttttaggggaagaaactcaaatcggactt  6607100         <-------TEIL      <------MYB83      <------MYB46(1)     --------->MYB46(2)     <---------------AtSPL8     --------->MYB111(1)     --------->MYB59     --------->MYB52(2)     --------------->AtSPL3    <---------MYB55(1)   <<<<<<<<<MYB98   <---------MYB52(1) ==============MADS_MADS                                                                    ------>ZmHOX2a(2) ==============MADS_MADS                                                                   <------ZmHOX2a(2) ---------DOF2                                                                            --------->ARR11(3) ------------->AGL15                          ----------->GT1           ----------->HVH21 --------->AGP1 -------ANAC58                                <---------ANAC46         --------->At5g28300<---------ARR11(3) -------ANAC58 <----------DOF2       <----------DOF2          ----------->GT1        <-----------HVH21   gctttgttaggtacgagctttattgtatttggaatttggctttgtgttctgtgaaattcgaattttgtaaaaccgtgactctgtttctgtgagatctatt  6607200  Previous    Next  AGI:  At5g19560.1    Description:  ATROPGEF10/ROPGEF10 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor/. similar to ATROPGEF8/ROPGEF8 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor/ [Arabidopsis thaliana] (TAIR:AT3G24620.1); similar to pollen-specific kinase partner protein [Lycopersicon esculentum] (GB:AAW57535.1); contains InterPro domain Protein of unknown function DUF315, plant (InterPro:IPR005512) Range:  from: 6603293    to: 6606450    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g19570.1    Description:  similar to hypothetical protein OsI_018061 [Oryza sativa (indica cultivar-group)] (GB:EAY96828.1); similar to Os05g0188300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054840.1) Range:  from: 6606702    to: 6607205    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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