Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <-----------GT1            <----------DOF2                <---------YAB1            --------->HSFB2a(1)             --------->SPL7              <---------ICU4             ------->TEIL                 --------------->AtSPL3              <--------HAHB4        <------ZmHOX2a(1)            --------->ANAC58 <---------ANAC58             --------->ICU4        <----------ID1                --------->ANAC58 <---------ANAC58  --------->GLK1(2)             ---------->DOF2                 <---------LBD16  --------->STY1(2)  <---------ARR14(2)        --------->LBD16<---------DAG2   --------->ANAC58     <---------STY1(2)  --------->ARR14(2)      ----------------->AGL3            --------->ANAC58<---------ALFIN1        <   tccaaatctgaatcgattattacaaaattccgaaaaaaggacgaaccttttagcaagttgggaagccacggactcgtaccacttgctagcattggggaag  6582900                                --------->TOE2(3)                         <---------ANAC46                        <---------At4g35610                        <------NtERF2                                                             ---                        --------->At4g35610                                              --------->MYB52(1)                   --------->ANAC58                       ------>ZmHOX2a(2)         --------->TOE2(3)                   --------->ANAC58  <---------bZIP60(1) <---------GLK1(1)         --------->ANAC58                  --------->SPL7--------->TOE1(3)       --------->ARR11(3)         --------->ANAC46 ------NtERF2    --------->ARR14(2)  --------->bZIP60(1)<---------ARR11(3)         --------->ANAC58   gcatcgctgggtttcactggaacggcagcgtaaaccttgacatcatccacagacaattgatctctgcaaattcaaactctcttatacgtcaaaacgggaa  6583000                                                                                          <---------ARR14(2)                                                                                       --------->ANAC46                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                      ------>NtERF2   --------->LBD16                 <---------ANAC46                        <---------REM1(1)            <---------LBD16                 ----------->GT1             <---------DAG2  <------MYB46(1) --------->ALFIN1--------            <---------ANAC58      --------->DAG2    --------->LBD16   --------->LBD16<---------ALFIN1            <---------ANAC58   <------ZmHOX2a(1)   --------->ANAC46  <---------LBD16<---------REM1(2)          <---------ARR14(2)  <----------ID1 <----------DOF2 <------MYB83 --------->ALFIN1--------->ARR14(2) -------->GT1    --------->ETT(1)---------->DOF2  <---------LBD16   <---------LBD16------>ZmHOX2a(1)<   tagaaacaatcgaatcgtgtcgcaaaaacaataggaaaagtgagaaactttacccggagatgtaggtttttccggcgaggtgctcctccacggatttgac  6583100                           --------->MYB52(1)                       --------->DAG2                      <xxxxxxxxxxxxxxxxsmallRNA(si3)                 ------>ZmHOX2a(2)                --------->CCA1(2)               --------->AGP1               --------->ARR14(2)               --------->ARR11(3)               <---------ARR11(3)               <---------AGP1                                                                       -               <---------ARR14(2)                                                                   <              <---------CCA1(2)                                                                     -             ----------->ARR10------->GAMYB                                                 <-------GAMYB        <---------ANAC46   <---------DOF5.7(2)        --------->ALFIN1                   --------->At4g35610    ====================HOX2a_HOX2a                 <---------ANAC58                  <---------At4g35610    ------>ZmHOX2a(1)---------->DOF2    <---------At4g35610    <------MYB46(1)        --------->At4g35610    ===================HOX2a_HOX2a      --------->At4g35610    <------MYB83           <---------ZAT2- --->HVH21 --------->REM1(2) --------->MYB46(3)     <---------ANAC58   <---------GLK1(1) <---------At4g35610 ---------ALFIN1<------ZmHOX2a(2)   <-----------RAV1(1) --------->ALFIN1 <------ZmHOX2a(2) <---------MYB46(3)   accctcctctgtgtgtagatctgaaaaggtaacggccattgttgctgagttttagggtgtgagggaggtagagagatcagagagactaagctgctgttga  6583200                   --------->ZAT2                ------>ZmHOX2a(1)              ----------->RAV1(2)            --------->ARR14(2)            <---------ARR14(2)            --------->ARR11(3)           <---------CCA1(2)           --------->GLK1(1)           <---------GLK1(1)          ---------->TaMYB80          --------->ARR14(2)          <---------ARR14(2)       ----------->GT1   ---------->DOF2 --------->At4g35610                                                         <----- -------->TOE1(3)  <---------At4g35610 --------->TOE2(3)                                       <----- ---------------AGL15                  --------->TOE1(3)                                       <----- -------------->AGL15       --------->GLK1(2)     *TSS                                      --------- -------->TOE2(3)  <---------ZAT2   --------->GLK1(1)                                   ---------->DOF2   aacctaaaagagtatatcctgagctgtgagactctgagaaaccctaaacccaaataaactgacaaatatttgggcttatttatgggccttcaaagtggct  6583300                                              <---------------AGL15                                              ==================================================MADS_MADS                                              <----------DOF2                                              --------------->AGL15                                             <-----------------AGL3                                 =                                             ========================================================                                             <-----------------AG                           <--------                    --------->DAG2           <-----------------AGL2                       ---------->DOF2               --------->LBD16               ========================================================              --------->HSFB2a(2)            ----------------->AGL2                    <---------ANAC55(2)              <---------HSFB2a(2)            <-----------------AGL1             --------------->AGL15    ---------->DOF2---------->DOF2       <---------MYB46(3)                     =====================  <---------HSFB2a(2)----------->GT1 --------->MYB59 ----------->GT1            <---------------AGL15 ----ANAC58  <---------LBD16         <---------TOE2(3)                         <-----------------AG < ----ANAC46<---------ARR14(2)        <---------TOE1(3)    --------->AHL20(2)   ====================== ----ANAC58--------->GLK1(2)  <-----------GT1======================================================== >ALFIN1 <---------------AtSPL8<---------TOE2(3)<---------AHL20(2)--------->TOE2(2)   --------->MYB59   cgttcccaaagagagtccggaaaaagtaaaattaacatttaggttgttctttatttggaaaaaaataacataggtctcaactctcaaataggtaaaggta  6583400                                             <---------TOE1(2)                                            --------------->AGL15                                   <---------AHL20(2)                                  <---------AHL20(2)                                  --------->AHL20(2)                                  --------->AHL20(1)                                  <---------AHL20(1)       ----------->GT1                              <---------AHL20(2)    <---------ANAC46                             --------->AHL20(2)   <---------ANAC46                          --------->YAB1    <---------------AGL15                          -------->HAHB4   <-----------------AG                         <---------YAB1    <-----------------AGL1                      <---------AHL20(2)   ----------------->AGL2        ----------->GT1 <---------TOE2(3)  <-----------------AGL3 ===========================================================MADS_MADS ===========================================================MADS_MADS -TOE2(3)             --------->AHL20(2)   ----------------->AGL3 ============================================================MADS_MADS                      <-------- ===========================================================MADS_MADS              --------->YAB1 -----------------AG --------->AHL20(2)    <-----------------AGL2  --------->TOE2(3)     ------------ ===========================================================MADS_MADS              ----------->GT1 ============================================================MADS_MADS    <---------YAB1 <-----------   tctacaaaattggaaataaacaaattaatgataaaatttattcttcccagttttgggtatagagtgaaaccttgatatgaatgaattgtaatttgtacta  6583500                                   <---------YAB1                                  <---------AHL20(1)                                  --------->AHL20(1)                                  --------->ARR11(3)                                  <---------ARR11(3)    --------->ANAC55(2)                                --------->AHL20(1)      <---------ANAC58                                <---------AHL20(1)      <---------ANAC58                          ----------->GT1             <-----------GT1                         --------->DAG2         <---------AHL20(2) ---GT1                 ---------->DOF2         --------->AHL20(2) --->AtSPL8           --------->YAB1         ------->TEIL          <---------WOX13(1) ----AtSPL8  <---------ARR14(2) <---------AHL20(2)    <---------AHL20(2)--------->YAB1<---------At4g35610   ttttgtatatatgtaaatctgtaatgaaaagtaaaatatttttgatgaatttaaatttacttgactccgattgatcatactaaaccagagctcattttgg  6583600                                                                                                   --                                                                                                   <-                                                                                           --------->CCA1(2)                                                                                          <---------ARR14(2)                                                                                          --------->ARR11(1)                                                                                          --------->ARR14(2)                                                                                          <---------ARR11(3)                                                                                          --------->ARR11(3)                                     --------->ANAC55(2)                                --------->LBD16                                   --------->YAB1                                      <-------------                       --------->MYB52(1)                                              --------------                     <------------MYB.PH3(2)                                          <--------------                     <---------MYB59 <---------ANAC55(2)                <---------ZAT6---------------                     <---------MYB111(1)                              <---------ANAC58<--------------                     <---------MYB46(2)                               <---------ANAC58---------------                     <<<<<<<<<<AtMYB44         <---------ANAC46  --------->GLK1(2)    <--------------                   <-----------GT1<---------ATHB51         <-----------GT1            ---------------            <---------YAB1        --------->ICU4         <---------AHL20(2)           ---------------       <---------ZAT6<---------MYB52(2)    <-----------HVH21    <---------GLK1(2)     <--------------   acttagtttgtgttattttagtaactaacttagacaattatgtaatgtcatgtgtatattttaacagaatttgagtgtcaattctcttcccagatatggc  6583700 ------->ICU4 --------ATHB12 --AGL15 ->AGL15                                                            <---------AtLEC2 ---AGL3                                                        --------->At4g35610 -->AGL2                                                        <---------At4g35610 ---AGL2                                                       <---------MYB46(3) -->AGL3                                                      <--------P ---AGL1                                                     <---------ANAC58                   <---- -->AG                                --------->REM1(1)      <---------ANAC58       --------->DAG2 -->AGL1                            ------>ZmHOX2a(1)        <-------GAMYB  ----------->RAV1(1) ----- ---AG                   <---------YAB1                     <---------MYB46(3)     ---------->DOF2   aatgagtcactaccatgctgcatatttatagttggctccttcatcttggaatcaacttctcttggttgctgcatgatacaacagataaagcttgagtctg  6583800  Previous    Next  AGI:  At5g19510.1    Description:  elongation factor 1B alpha-subunit 2 (eEF1Balpha2). Identical to Elongation factor 1-beta 2 [Arabidopsis Thaliana] (GB:Q9SCX3); similar to elongation factor 1B alpha-subunit 1 (eEF1Balpha1) [Arabidopsis thaliana] (TAIR:AT5G12110.1); similar to unknown [Populus trichocarpa] (GB:ABK92471.1); contains InterPro domain Translation elongation factor EF1B, beta/delta chains, conserved site; (InterPro:IPR001326); contains InterPro domain Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange; (InterPro:IPR014038); contains InterPro domain Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717); c Range:  from: 6581660    to: 6583250    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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