Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   >>>>>>>>>>>>>>>>>LFY                                                <-----------GT1                                              --------->CCA1(2)                                              <----------TaMYB80                                              <---------GLK1(1)                                              --------->GLK1(1)                                             ---------->TaMYB80                                             <---------ARR14(2)      --------->AHL20(2)                                             --------->ARR14(2)      <---------AHL20(2)                         --------->ICU4   --------->LBD16           <---------AHL20(2)                     <-----------TGA1    <---------ANAC46           <---------AHL20(1)                    --------->ANAC46     <---------ANAC55(2)        --------->AHL20(2)                <-----------GT1          --------->ANAC55(2)       <---------ATHB12             ----------->TBP        <---------ICU4       <---------ZAT14         --------->CCA1(2)        ------>ZmHOX2a(1)      --------->ZAT14         ------>ZmHOX2a(1)        --------->ARR11(3)       --------->TOE2(3)       <---------ZAT18        --------->TOE2(3)       <<<<<<<<<RAP2.2   <---------YAB1<-----------GT1 --------->ZAT14          --------->TOE1(3) -------CBF----------->TBP<---------ICU4<---------LBD16<---------ZAT14   <-----------GT1   tgattttttagatatataaaacccgtcattattctccttaattacgggatataccactgtacactcccaattaatttactctccttaaacattttgtatt  6553400                                <---------ARR14(2)                                --------->GLK1(2)                                --------->ARR11(3)                                <---------ARR11(3)                                --------->ARR14(2)                       --------->REM1(2)                               --------->GLK1(1)   <----------DOF2    <---------ANAC58                               <---------GLK1(1)--------->ANAC58      <---------ANAC46                     <----------DOF2            --------->ANAC58      <---------ANAC58           <---------ANAC46<---------ANAC46  <---------At4g35610   <----------DOF2 ----------->HVH21   <---------DAG2  <---------MYB52(1)         <-----------GT1        <----------DOF2   tctgtgactagtaatgtggaaggctttttgcgaatatctgttttttcagcaagcttttttcgaatattactttcgtgtatacatttgctctttttttttt  6553500                                                    ------>MYB83                                                    ------>MYB46(1)                                                   <---------------AGL15                                                  <---------MYB111(1)                                                  <---------MYB46(2)                                                  <---------MYB59                                               <---------ALFIN1                                              --------->MYB46(3)                            ---------->DOF2  -------->P ---------->DOF2                 --------->YAB1              ------>MYB46(1)                                    <----                 --------->ATHB12            ------>MYB83<---------TOE2(3)                  ---------                 <---------ICU4             --------->MYB55(1)                              <--------                 -------->HAHB4            <---------MYB46(2)     --------->ATHB12   --------->ANAC58                <---------ATHB12           <---------MYB111(2)   --------->ICU4      --------->AtLEC2                <---------YAB1             <---------MYB59       <---------YAB1      --------->ANAC58                --------->ICU4      <---------AHL20(2) <---------AHL20(2)        <-----------HVH21               <---------TOE2(3)    --------->AHL20(2) --------->AHL20(2)      <---------ARR11(3)   --------->AHL20(2)    <----------DOF2   <---------MYB111(1) --------->YAB1  --------->ARR11(3)   ttggtttaaatttttctaatgatgggactttaaagaatttaaatacctaccacctaattaaagaagaatgattcaatagaagatgtcatgcaaattaaat  6553600         --------->YAB1         <---------ICU4        --------->ICU4      <---------ICU4                                                                               <-     --------->ICU4                                                                                --   --------->YAB1                                                                                <---   --------->ANAC46                                                      <---------ICU4      <-------   --------->ANAC55(1)                                                 --------->ARR11(3)    <------- <---------ALFIN1                       <---------YAB1                 <---------ARR11(3)   <-------- -------GT1               <---------ARR14(2)                        <---------YAB1          <-------- >AHL20(2)                <---------GLK1(2)                  ---------->DOF2           <---------ICU4 -AHL20(2) <---------YAB1 --------->ARR14(2)       ------->TEIL----------->GT1    --------->AHL20(2)   accacacataattatgttatttgtaatggatactctatgactatgatgtaatgtattttcttcaaaagttataaatcttgacattttaaaaattgcttta  6553700                      <---------ZAT18                      --------->ZAT14                      --------->ZAT18                      <---------ZAT14                    <---------------AtSPL3  ----------->GT1   <---------------AtSPL8 ------>ZmHOX2a(2) <---------ANAC58              <-----------RAV1(2)         <---------HSFB2a(1) --------ARR11(3)  <---------ANAC58           ----------->HVH21<-----------RAV1(1) ------->ARR11(3)  <---------ANAC46------------>CBF    ----------->ARR10     --------->HSFC1(2) ------YAB1      <---------YAB1  ---------->ID1  ==========================RAV  <-------TEIL --DAG2     <---------ANAC58   <-----------RAV1(1) ----------->GT1           --------->HSFB2a(1) ---DOF2    <---------ANAC58   ==============================RAV             <---------HSFC1(2) -ANAC58    <---------ANAC46  ------>ZmHOX2a(2)<------ZmHOX2a(1)       <------ZmHOX2a(1)  <---------MYB52(1) -ANAC58   ---------->ID1     ========================HOX2a_HOX2a --------->ALFIN1   --------->ARR14(2)   tgatctgtaacatgtcgttttgagtgtactgatctgtcgcaattctataggacaggttagaacttctggtggaggaagaaggttcgggttctgttttgtc  6553800                                                                                      --------->MYB46(3)                                                                                    <---------ALFIN1                                                                                    ----------->RAV1(1)                                                                                 --------->PCF2                                                                                <-----------HVH21                              <---------LBD16      <-----------ARR10         <---------At4g35610                --------->MYB52(2)   --------->YAB1--------->ARR11(3)        --------->At4g35610              <---------MYB52(1)     <---------ICU4<---------ARR14(2)       --------->MYB52(2)       <----------DOF2        <---------ANAC46     --------->ARR14(2)    <---------SPL7   <---------ZAT18          <---------ARR14(2)     <---------ARR11(3)   <---------MYB46(3)  <---------ANAC58         *TSS     <---------ATHB12     <----------DOF2<---------DEAR3(2)  <---------ANAC58      <---------TOE2(3)         <---------GLK1(1)     --------->MYB55(2)  <--------  <---------ANAC46--------->ARR11(3)--------->ICU4<---------CCA1(2)    --------->ALFIN1   <---------ALFIN1   tcttgtgtgctttgttgttagttcttgaggtatcgggaatcattctcttagcatatctccttttctcgtctcggtggttcgctgtcccacagccactctc  6553900                                                                                                    <                                                                      <---------ANAC58        <------NtERF2                                                                --------->ARR14(2)           <-------                                                                <---------ARR14(2)           ------>NtERF2                                                                <---------ARR11(3)          ---------                                                                <---------ARR11(1)          ---------                                                               <---------ARR14(1)           ---------                                                               ------>MYB46(1)              ---------                                                               <---------CCA1(2)            ---------                                                           -------->P <---------ANAC58      <--------                                                          ------->GAMYB <---------MYB52(1)  ---------                                                         <---------MYB111(2)                ---------                 <---------ICU4           --------->ARR11(3) <---------MYB59                ---------                 --------->YAB1    <---------At4g35610   <---------MYB52(2)                 ---------            ------>ZmHOX2a(1)      --------->At4g35610   <---------MYB111(1)               --------->RAP2.3(1)     --------->LBD16             <---------HSFB2a(2)     <---------MYB55(2)                --------->ORA47(2)    <---------LBD16           --------->GLK1(1)          --------->MYB46(3)                --------->ERF1   <---------LBD16      --------->MYB52(1)<---------ARR11(3) <---------MYB111(1)          <---------RAP2.3(1) -ALFIN1   --------->TOE2(3)  <---------GLK1(1) <----------DOF2------>MYB83 <-----------GT1--------->ATERF1(1)   tctaatccgggctccttaatcttgacgaacagatttcagaagaacatcttctttcttcaactaccaaatctttcgttttttctatctaatttcgccgcca  6554000      --------->DOF5.7(2)      <---------MYB52(1)     <-------GAMYB    <---------ANAC58    <---------ANAC55(2)    <---------ANAC58    --------->ANAC55(2) ---------GLK1(1) --RAP2.6(3) >RRTF1(2) >ANAC46<---------DOF5.7(2) >RRTF1(3)               --------->At4g35610 >ATERF1(2)              <---------At4g35610       <---------ARR14(2) >DREB2C(2)     <---------ANAC58                   --------->ARR14(2) -ATERF1(2)     <---------ANAC58                  <------ZmHOX2a(1)             <-----------GT1 >DEAR3(1)      ------>ZmHOX2a(2)              <---------LBD16             <----------DOF2        <-- >RAP2.6(2)    <------ZmHOX2a(2)     ====================HOX2a_HOX2a     <-------TEIL<---------MYB52(1) >RAP2.3(3)   <---------ARR11(3)     --------->ETT(2)                   <---------ARR11(3)        --- >RAP2.3(2)   --------->ARR11(3)     ------>ZmHOX2a(2)  ---------->ID1 <---------GLK1(2)          <--   tgagttccgttaccgagatcgtgtctgagcagcaagtgatcgacggtattcaggatttggcccttcaaaatcaggttctttgttacccttattcaattca  6554100                                               <---------ANAC58                                               <---------ANAC58                                               <---------ANAC46                                           <----------DOF2               <---------ZAT2            <-                                          <---------ANAC58               --------->At4g35610     <---     <---------CCA1(2)                    <---------ANAC58     <---------ANAC46             <-------- -------ARR14(2)                    <---------YAB1            <---------LBD16<---------GLK1(2)<------ ------>ARR14(2)              <---------AHL20(2) <-----------RAV1(1)     <---------At4g35610<-------- -------GLK1(2)               --------->AHL20(2) --------->ALFIN1    --------->ALFIN1     <---------YAB1   tattctcgtctcttgatgaaaattttcaaattttaaatatgtttgctttgtgtgtcggtcttgtttcggagttggagctgattctgtccatgatgcttct  6554200                                             <---------ANAC58                  --------->AHL20(2)                                             <---------ANAC55(2)         <---------ANAC55(2) ---------DOF2                               <---------ANAC46            --------->ANAC55(2) ------At4g35610                             <---------ANAC58            <---------ANAC46 -ANAC58                                     ----------->GT1             <---------ANAC55(1) ---At4g35610  ------->TEIL            <---------TOE2(3)              <---------YAB1 -ANAC58      <---------CCA1(2)        <---------TOE1(3)          <-------GAMYB<---------AHL20(2)   gcttctatgtggaaatgtatctagccttgctccacaatattagggtttcgtaaatttttgattttgtgcgttattatgtgtttaatttcgaattggacga  6554300  Previous    Next  AGI:  At5g19430.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G12310.1); similar to Os01g0954400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045432.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16852.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6553827    to: 6555833    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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