Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <-----------ARR10                <---------ARR11(3)                --------->GLK1(2)                --------->ARR11(3)           <---------AHL20(2)                                                     <---------ARR14(2)           --------->AHL20(2)       <---------YAB1                                --------->ARR14(2)       --------->ATHB12  --------->AHL20(2)                                       <---------ARR11(3)      <---------YAB1   <----------DOF2                                <---------AHL20(2)      <---------ATHB12--------->TOE2(3)                              <---------AHL20(2) <---------At4g35610------->TEIL    <---------MYB52(1)           <---------YAB1  <------ZmHOX2a(1) -ZAT6--------->ICU4-------->P    <---------ZAT6   ----------->GT1   --------->AHL20(2)          <---   ttgagctaatgatttaaaaatctacctttaaatctactgttattgaaaacaatttgtgaatttcattcttattaattttgagaggattttagaaaatttc  6498400                                                                                                <----                                                                                                -----                                                                                            <--------                                                                                         <---------YAB1                                                                                       --------->ATHB12                                                                                       --------->YAB1                                                               --------->AHL20(2)      <---------ICU4                                                         <-----------GT1    <---------DAG2 <---------AHL20(2)                                                   --------->DAG2           <----------DOF2--------->AHL20(2)                                                  ---------->DOF2        <-----------GT1--------->TOE2(3)     --------->AHL20(2)                     --------->TOE2(3)  <---------AHL20(2)     --------->ICU4< -------DOF2         <---------CCA1(2)      <----------DOF2    ---------->DOF2        <---------ATHB12   tttagataaaaatacagaaattcaaatctcatagttttagatagaactttaaaaaagttttacaataaatcacattaacttttctaaaatcattaaaatt  6498500                     <---------ARR14(2)                     --------->ARR14(2)                 --------->ARR14(1)                 --------->CCA1(2)                 <------ZmHOX2a(2)                --------->ARR14(2)         --------->ATHB12                --------->AGP1            <---------YAB1             --------->MYB52(2)      --------->GLK1(2)               <---------ICU4                 <---------MYB46(3)      --------->ARR11(3)              --------->AHL20(2)           <---------MYB52(1)     --------->CCA1(1)                --------->YAB1             <---------ANAC58     --------->RVE1(1)  <---------ALFIN1 <---------ARR11(3)      <---------ANAC46 -----AHL20(2)  <---------ARR14(2) --------->YAB1                <---------ANAC58 ---->AHL20(2)----------->ARR10 --------->YAB1                  <---------TOE2(3)          <---------ZAT14 -YAB1<---------ARR11(3)<-----------GT1  --------->ARR11(3)   --------->TOE2(2)            --------->ZAT14 ---------AHL20(2)------>ZmHOX2a(2)<---------ICU4--------------->AGL15      <---------AHL20(2)     <-   atataaaaaatcttgttagatccgatacaccctctaataataatatcattgccaagtattgaaacttacgtttgttatataatgggtatgtagtttacta  6498600                  --------->DOF5.7(2)                  <---------MYB52(1)                 --------->At5g28300                 <-------GAMYB                 <---------RAP2.6(3)                <---------MYB46(3)            --------->ZAT18           --------->ALFIN1         <---------ANAC46         <---------bZIP60(2)         <---------O2         <---------TGA1a           <---------AHL20(2)    ------>NtERF2         ===================================================bZIP_DOF         ================MYC_MYB   --------->AHL20(2)   <---------ATERF1(1)      ----------->HVH21       <---------ARR11(3)      <---------LBD16    <---------ANAC58          --------->ARR11(3)   --------->ANAC46    <---------ANAC58          --------->AHL20(1)   --------->ANAC58    <---------ANAC46          <---------AHL20(2)   --------->ANAC58                   --------->DAG2    <---------ANAC55(2)       <---------AHL20(1)<---------ARR14(2)                   ---------->DOF2    <---------ANAC55(1)       --------->AHL20(2)--------->ARR14(2)               ----------->GT1    --------->ANAC55(2) <-----------GT1      --------->YAB1              ----------->GT1        ----- --------ICU4   ----------->GT1<---------AHL20(2)---------->DOF2        ----------->GT1     ---------   acaattacgtgaagtgggccgttaatttacaatatatttaaaattaagcataaacgcccggcccaaaatagagaagggtaatatagtaaaagcggaaaga  6498700                                      <-----------HVH21                                     <---------ANAC58                                   <---------ANAC58                                            <-----                                   <---------ANAC46                                 <---------ANAC46                                   <---------ANAC58                              *TSS          <-----                                  --------->ABI4(2)                            --------->TGA1a<------                                  <---------ZAT18          <---------ANAC58    ====================== ----------->GT1    --------->TOE2(3)<---------ANAC58      <---------ANAC58    ====================== ----->DOF2    ------>ZmHOX2a(1) --------->ALFIN1          --------->MYB52(2)  --------->O2 <-------- ->DOF2 --------->ARR11(3)      <---------MYB52(1) <---------AHL20(2) <---------GLK1(1) <---------CCA1(2)   aaggggttaagaccctccttatccctaatagaccggtgcgcgtgagcgactaaataatcgttcgtgatatcgatttctctcccgtctcgtttatctttcg  6498800                                                               --------->ANAC58                                                               --------->ANAC58                                                              --------->SPL7                                                              --------->RAP2.6(3)                                                             <---------ARR14(2)                                                             --------->MYB52(1)                                                          --------->ANAC58                          -                                                          --------->ANAC46                     <-----                                                          --------->ANAC58          <---------------AGL15                   ------->GAMYB                        --------->MYB52(1)    <---------AHL20(2)    - ----ANAC58     --------->MYB52(1)                   --------->YAB1          <---------AHL20(2)------ ----ANAC58     ----------->RAV1(1)             --------->AHL20(1)    ------->GAMYB--------->GLK1(2)- ---LBD16    --------->ANAC58                   --------->AHL20(2)  --------->At4g35610        ------ ==========================MYC_MYB             --------->YAB1--------->ARR14(2)  <---------AHL20(2)<- ==bZIP_DOF  --------->ANAC58             ------------------------>ANAC81    --------->AHL20(2)<----- --DOF2    ---------->DOF2      --------->CCA1(2) --------->YAB1   ----------->RAV1(1)    --------->YAB1   gggctaaaaactcgaaagcaacagcgatagagagatttggagaaaacaaaaataataaaaacggaacggcaacagaaaattaaataatctaattagaaac  6498900            <---------At4g35610               <---------HSFB2a(2)        <---------REM1(1)              <------ZmHOX2a(2) ------>NtERF2                        --------->ARR14(2) --------->LBD16                      <---------ARR14(2)                      <------------MYB.PH3(2) -------->ANAC46                    --------->HSFB2a(1)                       <---------MYB111(2) ----HSFB2a(1)                 ===============HOX2a_HOX2a                     <---------MYB46(2) -------->ANAC58            <------ZmHOX2a(1) --------->HSFB2a(2)           <-----------GT1 --->HSFB2a(1)              ==================HOX2a_HOX2a         ------>ZmHOX2a(2)     --------->ANAC46 -------->ANAC58         <-----------RAV1(2) <---------ETT(2)    <---------GLK1(1) <----------DOF2 --->HSFC1(2)  --------->ZAT2  <------ZmHOX2a(1)  <----------ID1 --------->GLK1(1)<---------DAG2 --------LBD16 <---------At4g35610  <---------HSFB2a(1)     ----------------------->TaNAC69(2) ----HSFC1(2)  --------->At4g35610 <---------KAN4(2)  ---------->DOF2 <---------At4g35610   ------>NtERF2   tcccgccatggtgaagcagctacaagagcaggaggagaacgatcccgtcgagaagacaaagtctctgatctctgctcttaactacctttctcgcgacctt  6499000                                                                       --------->LBD16                                                                       ------>NtERF2                          --------->ARR14(2)                          --------->ANAC46                         <---------MYB52(1)                           --------->DEAR3(1)                       <---------ANAC58                  ------>ZmHOX2a(2)                       <---------ANAC58                  ===============HOX2a_HOX2a                 --------->ANAC46               <-----------HVH21    <---------LBD16             <----------DOF2         <---------At5g28300================HOX2a_HOX2a  <---------At4g35610             <---------DAG2         <-----------GT1     <------ZmHOX2a(2)     <---------ANAC46            <---------DAG2<---------ARR14(2) ------>NtERF2       ------>ZmHOX2a(1)   --------->At4g35610   ctcttgccttctcacctttacgcttccgtttcttctatttaccatgcctccgtctccgatctctctccttctccgcctcttcgtgtaagctgtttcttcg  6499100                 <---------MYB46(3)                <---------TOE2(3)            <---------GLK1(1)           <---------ARR14(2)                                             <---------ANAC46           --------->ARR14(2)    <-----------GT1                          <---------ANAC58   --------          <------ZmHOX2a(1)    --------->HSFB2a(1)                        <---------ANAC58   <-------  <---------AtLEC2             <---------HSFB2a(1)                 --------->MYB46(3)    --------->HSFB2a(2)  <---------ANAC58             <---------HSFC1(2)             --------->HSFB2a(2)        <---------HSFB2a(2)  <---------ANAC58<-------GAMYB--------->HSFC1(2)          ------>ZmHOX2a(1)             --------->HSFC1(1)   atttgcatgttaggatttgtggttgtgaatcgaattttctggctctgtgcttcttcaactccttctctaaccaattccttggagtttccttctcgaattc  6499200                                              <---------ANAC58  <---------ARR14(2)                          <---------ANAC58  ------->TEIL            <----------DOF2     <---------AtLEC2               <---------------AGL15  --------->ARR14(2)      <---------YAB1    <---------YAB1                  ----------------->AGL1 ->ARR14(2)  <---------WOX13(1)      ----------->GT1              ----------->GT1 --ARR14(2)--------->ATHB12     <---------AtLEC2         <---------AtLEC2   ----------------->AG   gatgaatccgaattcattgatttttgtgatttttggatgaagttatatgcttggattttgcagggaaatagttatactcccaatagaggtgatttgatga  6499300  Previous    Next  AGI:  At5g19310.1    Description:  homeotic gene regulator, putative. similar to ATCHR12, ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G06010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71127.1); similar to PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b isoform 10 [Canis familiaris] (GB:XP_859981.1); similar to chromatin remodeling complex SWI/SNF protein [Physcomitrella patens subsp. patens] (GB:EDQ72819.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEA Range:  from: 6498781    to: 6503434    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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