Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------AHL20(2)                                            <---------AHL20(1)                                            --------->AHL20(1)                                            --------->AHL20(2)                                           --------->AHL20(2)                                           <---------AHL20(2)       --------->AHL20(1)            <---------ANAC58                               --------->YAB1       <---------AHL20(2)            <---------ANAC58                               <---------ICU4       <---------AHL20(1)            <---------ANAC46                              <---------YAB1    --------->AHL20(2)            XXXXXXXXXXXXXXXXXXXXX>MIR828                --------->YAB1 --------->YAB1               <----------DOF2     ---------->DOF2        --------->TOE2(3) -ANAC55(2)  --------->ANAC55(2) <---------ANAC58<---------AHL20(2)   <---------ARR14(2)          --- >ANAC55(2)  <---------ANAC55(2) <---------ANAC58--------->AHL20(2)   --------->ARR14(2)        -----   ttttcataatatatcacttattcacatatattctttcttgcttaaataaatttaaagaaaaacaagaatgcaaatccataacataatcataacataagta  6458600                                                                                        <---------AHL20(2)                                                                                       <---------AHL20(2)                                                                                    --------->AHL20(2)                                                                                    --------->AHL20(1)                                  <---------TOE2(3)                                 <---------AHL20(2)                                  <---------TOE1(3)                              ------>MYB83                            --------->AHL20(2)                                --------->ANAC58                          --------->ARR11(3)                                  --------->ANAC58      --------->YAB1      <---------ARR11(3)         --------->YAB1        --------->ZAT18   --------->WOX13(1)    --------->YAB1        --------->ANAC46            <---------ZAT14 ------>ICU4          ---------->DOF2     <---------AHL20(2)    ---------->DOF2  ------>MYB46(1) ----->DOF2      --------->MYB46(3)----------->GT1  <---------ATHB12       <---------ZAT18   <-------   aagattaatcaaacttctaacaaacaaagataatataaggttaatttatacacaatcaagaatcaacaaagcatgagagcaccaaattttttattttact  6458700                                                             --------->AHL20(2)                                                          --------->YAB1                ---------->DOF2                         --------->AHL20(2)               ----------->RAV1(1)              --------->ANAC58                         --------->YAB1               ------>ZmHOX2a(1)              --------->ANAC58                        --------->AHL20(2)       <---------GLK1(2)            <----------ID1                          --------->YAB1             <---------ARR14(2)          --------->ANAC58                        --------->AHL20(2)           --------->KAN4(2)  ---          --------->ANAC58                        <---------AHL20(2)         <---------YAB1     <---- ----GT1---------->DOF2             <-------TEIL --------->YAB1        --------->ICU4   --------->REM1(1)   atccaaacttgaaagcaccaaagttcaaaatttcaaaatacatagagactataaaaataaaaataaaacagtattgatgaagattcctctacaacatttt  6458800                                                                 >>>>>>>>>GATA-1                                                                 <---------ARR14(2)                                                                 >>>>>>>>>GATA-4                                            <---------AHL20(2)   >>>>>>>>>GATA-3                                   --------->TGA2(2)             >>>>>>>>>GATA-2                                  <-----------HVH21          --------->At5g28300                                 <---------ANAC55(2)         <------NtERF2                        <---------YAB1  --------->AHL20(2)   <-------GAMYB               <---------AHL20(2)--------->ANAC58           <---------MYB46(3)                     --               <---------ICU4    --------->ANAC46          <---------ANAC46                        <-              <---------ATHB12   --------->ANAC55(2)       <---------DEAR3(1)                 <------              <---------YAB1     --------->ANAC55(1)       <---------DREB2C(2)               <-------GAMYB              <---------ATHB51   --------->ANAC58   <---------YAB1 ------------>CBF<---------AHL20(2) ------->ID1  --------->ICU4<-------TEIL<---------AHL20(2) <---------RAP2.6(2) --------->AHL20(2) --- -------RAV1(1)-------->HAHB4   --------->SPL7<---------TOE2(3)<---------MYB46(3) --------->AHL20(2)   gttgtttattgctctaattattcattttgattcatacgtcatataatttatgttataaatggcggtggattcaatacgagattatttaatatttcggtta  6458900                                                                 <---------At4g35610                                                         --------->GLK1(2)       --------->TOE2(3)                                 <---------ARR14(2)       --------->YAB1                                    --------->ARR14(2)                        <-      ----------->GT1                                   <---------GLK1(1)                         ---     <---------TOE2(3)                                  --------->GLK1(1)                         ---   --------->AHL20(2)                                  *TSS  --------->LBD16<---------ANAC46     <---   <---------AHL20(2)                               --------->ANAC58      --------->ZAT14        <--- ------->AHL20(2)                                   --------->ANAC58      <---------ZAT14        ---- --------AHL20(2)                                 ---------->DOF2--------->At4g35610             <--- ---MYB52(1)           <---------AtMYB61          <---------ATHB12     <---------ZAT6            <--- ------>AHL20(2)  <---------MYB46(3)          ------------>CBF  <---------ARR11(3)              -----   tttaattaatgttaatttgtttgttatggtcttcattttcttcgatgagccaataagcaaatccgagagcttagtgtgaagtgaagaagagtttcaatgg  6459000                                                                                   <-----------HVH21                                                                                   <-----------TGA1                                                                                  --------->ANAC55(2)                                                                                  --------->ANAC46                                                                                 ------>ZmHOX2a(2)                                                                                 <-------TEIL                                                                                <------ZmHOX2a(2)                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)                                                                               --------->AGP1         <-----------GT1                                                       --------->ARR14(2)       <-----------GT1                                                --------->SPL1(2)    --------->AHL20(2)                                                --------->SPL7 -----NtERF2                                                         --------->SPL1(1) ------>RAP2.6(2)                                                    <---------SPL1(1) --->NtERF2<------------------------ANAC81                          <---------SPL7<---------ANAC55(2) ------ATERF1(2)                                                   --------->TOE2(1)      <------ZmHOX2a(2) ------RAP2.6(2)                                                   --------->TOE1(1)<---------MYB52(1) ----->ATERF1(2)                                                  <---------------AtSPL3 <---------ARR14(2) ------ANAC46                                                    <------------------SPL14--------->ARR14(2) ------DEAR3(1)                                          <---------CCA1(2)   ----------->ARR10  <---- ---->RAP2.6(3)   <----------DOF2                --------->YAB1 --------->YAB1 <---------ARR14(2)   cggcaattttttctctcttccttttcttcattctcttcatcgtctctcttctcatcatcttatctttcatcgtacggccaagatccgtcacgatccccat  6459100         <---------TGA1a                                         --------->ATERF1(1)         --------->O2                                           <---------ATERF1(1)         --------->ANAC58                                       ------>NtERF2         <---------O2                                           <---------RAP2.6(3)         --------->ANAC58            --------->GLK1(2)         <---------ANAC58         --------->bZIP60(2)        --------->ARR14(2)         <---------ANAC58         --------->TGA1a    <------ZmHOX2a(2)                  <---------ANAC46        ------>NtERF2    <---------MYB46(3)                  --------->SPL7       <---------ALFIN1 --------->ALFIN1                  --------->DEAR3(1) --------->ARR14(2)    <---------MYB52(1)               <---------At5g28300    ---------->DOF2  <---- -----ATHB12        <---------LBD16 <---------ARR14(2)----------->HVH21   --------->ZAT18   ------>ZmHOX2a(1)   caagtttcgccacgtcttcatcaccggtggatcaagcggaatcggtctcgctctcgctcaccgtgccgtctccgaaggcgctaaagtctccatcctcgct  6459200                                             -------->P                 <---------At4g35610                                          --------->At4g35610    ------->MYC3                                          <---------At4g35610    ------->MYC2                                          --------->STY1(2)      <-------MYC3                                          <---------STY1(2)   <---------ALFIN1  <-------TEIL                    --------->ANAC58  <---------At4g35610    <------NtERF2   --------->HSFB2a(1)        ---------->DOF2               --------->STY1(2)    <---------ETT(2)------>NtERF2      <------NtERF2     ------->GAMYB  --------->ANAC58  --------->At4g35610  --------->RAP2.6(2)<---------SPL7 ------>NtERF2   <---------At4g35610        <------ZmHOX2a(2)   --------->ALFIN1      --------->At4g35610 ---------   --------->At4g35610   --------->MYB52(1)  --------->MYB52(1)------>NtERF2--------->SPL7  <-------- <---------WRKY12 <---------ATERF1(1) --------->ZAT2 <---------ANAC46   <---------LBD16     --------- -----TOE1(2)    --------->DEAR3(1)   <---------ZAT2<------NtERF2<-------MYC2<---------HSFB2a(1) <---   cgttcaactgaaaagctcgccgaagccaaacgatccatccagctagctaccggtgtcgaggtcgccacgttctctgcggacgttcgcgattacgacgccg  6459300                                                    <---------ANAC58                                               <---------ICU4                                        ----------->GT1                                       <---------WOX13(1)                                      <---------ANAC58                                      <---------ANAC58    --------->ATHB12  ---------->DOF2                    --------->ATHB12    <---------YAB1<---------ANAC58            <- >DEAR3(1)                          <---------YAB1  <---------ANAC46   <---------ANAC58            <- -DEAR3(1)             --------->DEAR3(2)     <---------ATHB12       <---------ARR11(3)       ------- >ANAC46 <---------WOX13(1)<------ZmHOX2a(2)--------->WOX13(1)   ---------->DOF2            <------ZmHOX2a(1) ------MYB52(1) ------->TEIL     --------->ALFIN1   <---------ANAC58 --------->ARR11(3) ------>ZmHOX2a(1)   tttcgaaagcgattgatgaatcgggaccgatcgatgtgttgattgttaatcaaggcgtgtttattgggaaagagcttgagaaacagagtcctgaggaggt  6459400                                                   <---------DAG2                                                   <----------DOF2                                                 <------NtERF2                                               <---------RAP2.3(3)                     ------>ZmHOX2a(1)                  <---------At4g35610          <---------RAP2.3(2)                  --------->PCF5                 --------->GLK1(2)             <---------DEAR3(1)              <---------ANAC58        <---------WOX13(1)     <----------DOF2 <---------RAP2.6(2)             <---------ANAC46      --------->ATHB12       --------->At4g35610------>NtERF2   ---------->DOF2<---------ANAC58     <---------YAB1 ----------->HVH21         --------->RAP2.6(3)             --------->ALFIN1 --------TOE1(3) <---------ARR14(2)         <---------TOE2(3) <---------YAB1<------MYB83 --------TOE2(3) ------->TEIL<---------At4g35610<---------RAP2.3(1)         <------MYB46(1) ---->GT1        --------->ARR14(2)   <---------YAB1 <-----------GT1       <---------AtMYB61   taagtttatgattgatgtgaatctgactgggagcttcaatgtgattaaggcggctttacctgctatgaaagctagggaaggtcgtggtcctgcttccatt  6459500  Previous    Next  AGI:  At5g19200.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G06060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71113.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 6458955    to: 6460858    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version