Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------YAB1                                                    --------->ICU4                 --------->YAB1                                              --------->MYB59                     <---------YAB1                                          <--------HAHB4                         --------->AHL20(2)                                          <---------ICU4                        <---------ICU4                                          --------->ATHB51                      <--------HAHB4               <---------AHL20(2)        <---------YAB1                        <---------YAB1               --------->AHL20(2)   <------ZmHOX2a(1)---------->DOF2           --------->ICU4   <---- ----------->GT1     <-----------HVH21   --------->ICU4<---------YAB1   ---------->DOF2        <-----   atgatgtaaattggcatttattttgtcacagcatagcaggaccataattaggccataatgctagttttctatatgaaagtcattattatagttcttaatc  6339700                                                  <---------MYB52(1)                                        <----------DOF2           <---------ICU4                                   <---------MYB52(2)       --------->YAB1           <---------HSFB2a(2)   --------->ZAT6  <-------GAMYB   --------->ICU4                     - -----ICU4 --------->HSFB2a(2)  --------->MYB46(3)--------->DOF5.7(2)          <----------DOF2      - ----------AGL15      ---------->DOF2   <---------DAG2--------->TOE2(3)        <---------DAG2       -   tttgtagcaatttccagacgaataaaaagtctcgaccactaactttacgaccgttaccacaatcacaaagattacaacttcctttttggtttctgacttc  6339800                        ------------>CBF                       <---------------AGL15                       ------->GAMYB                       --------->TOE2(3)                       --------------->AGL15                      ----------------->AGL3                      ----------------->AGL2            <---------ARR11(3)            --------->ARR14(3)                                                      --------->YAB1            <---------ARR14(3)                                                     <---------ATHB12            --------->ARR11(3)                                                 ------------>CBF            <---------GLK1(2)           --------->TOE2(3)                   <-----------GT1          ----------->ARR10  --------->YAB1                             <---------AHL20(2)    <------  --------->ANAC46    <-----------------AGL3  <----------DOF2         --------->TOE2(3)     --------- -------->ANAC58      --------->MYB46(3)--------->TOE1(3)      <---------GLK1(2) --------->WOX13(1) -------->ANAC46 --------->YAB1         <---------MYB59 <---------ANAC46--------->AHL20(2)----------- -------->ANAC58<---------YAB1     <---------MYB52(2)  <-------TEIL   <----------DOF2     -----------   tcacacaaaaccaagattttgataaccacaattagaaacaaacctaaactttccagtttcatgtagattctactttaattactcaatcaaaacccgtaca  6339900                                     <---------ARR11(3)                       <---------ARR11(3)                       --------->ARR11(3)   ---------->DOF2  --------->AHL20(2)      <------------CBF --------->YAB1     <---------AHL20(2)   ------------>CBF                  ----------->GT1     ------ -TEIL        ----------->GT1        --------->ARR11(3)              --------->ANAC58         ------>ZmHOX2a(1) >LBD16--------->AHL20(2)           --------->RVE1(1)        <---------AHL20(2)           <---------ARR14(2) ---->AtSPL8 --------->DAG2         --------->CCA1(1)       --------->AHL20(2)    <---------AHL20(2) ---->AtSPL3---------->DOF2    --------->YAB1        ---------->DOF2 --------->ANAC58     --------->ARR14(2)   taatcaaaagaaaataaagtaataaaatcttcatcaaaatatctacaattgattcaaaagcattaaatctcacgaccttgttaaataatccatttcctcc  6340000                                                                         --------->YAB1                                                                         <---------ICU4                                                                         -------->HAHB4                                                                        --------->ICU4                                                                        <---------ATHB51                                                                   ----------->GT1            --------->TOE1(3)                                    --------->At4g35610           ------            --------->TOE2(3)      <---------ANAC58             --------->GLK1(2)              ------            <---------DAG2         <---------ANAC46         --------->YAB1      --------->GLK1(1) ------>CBF <---------MYB59        <---------ANAC58   --------->YAB1  --------->YAB1         <-------   aatactctcgcttaccttacctctcttacaaactcttgcgttttgatatcatctcatcaaaatcagaagctgtaataatgggaactcatcgaattatcct  6340100           <----------DOF2         <----------DOF2      --------->DEAR3(1)         <---------At4g35610 --------------->WRI1       --------->ANAC46                           --------->WOX13(1)       ----- --->TOE2(3)   ---------->ID1--------->TOE2(3)                       <------ZmHOX2a(2)    <---------- --YAB1------>NtERF2     --------->ETT(2)                      ------>ZmHOX2a(2) --------->AtLEC2 ---   tggtctcgccgctctttgttgtttttgtctacctcatctcattgaagctaaaccattcgaagtgatcgtcgatcaatcgggccatggaaatttcacgacc  6340200                                                                   <----------DOF2                                                                 ----------------->AGL1                                                                <------NtERF2                                                               ------>NtERF2                                                               <---------RAP2.6(3)                                                              <---------RAP2.6(2)                                                              --------->DEAR3(1)                                                              --------->ATERF1(2)                                                              <---------ATERF1(2)                                                              --------->RAP2.6(2)                                    --------->ATHB12     <---------DOF5.7(2)                        <                          --------->YAB1<---------MYB46(3)   --------->RAP2.6(3)       ----------->RAV1(1)    --------->DAG2       --------->MYB46(3)              ---------->DOF2        <---------ZAT14    --   ---------->DOF2       <---------ATHB12              --------->DOF5.7(2)      --------->ZAT14    -- ---->AtMYB61          --------->WOX13(1)             --------->TOE1(3)        --------->ALFIN1 ----- -GT1       --------->ATHB12  --------->YAB1          --------->TOE2(3)   <-----------HVH21    <----- ------>AtLEC2  --------->MYB59    <---------YAB1   <---------TOE2(3)    --------->ANAC46   <-------TEIL   atacaaaaagctattgattcggtcccaatcaacaatactcattggttcttcatcaacgttaaagccggcctttacaggtcagtgtagcacaacatacatc  6340300                 <---------ANAC55(2)           --------->DAG2              <---------ANAC55(2)    --------->At5g28300               <-------TEIL   ----------->GT1      <---------ANAC58 ---------WRKY18(1)     <---------ANAC58                                           ----------->GT1 ------->WRKY38(1)      <---------ANAC46                                         <---------ANAC58 ------->WRKY12 <-------TEIL      ----------->GT1                                <---------ANAC46 ---->ATHB12----------->GT1--------->REM1(2)   ---------->DOF2         <-----------GT1 ----YAB1 ---------->DOF2<----------DOF2     ----------->HVH21  <---------TOE2(3)<---------ANAC58----   attgactgtaaataaagttacatatggcttgtagggaagttacatatgtgaaagtgtttactaactaatgttttttctctatgtcttgtaaaatcaagag  6340400                                                         <---------WRKY38(1)                                                         <---------WRKY45                                                         <---------WRKY12                                            --------->At4g35610                                            <---------At4g35610             --------->LBD16                <---------ZAT2     <---------TOE2(3)                      --------->ZAT2    <-----------GT1  <-----------GT1  --------->TOE1(2)<-----------HVH21                        -----    --------->MYB52(1)  <---------------AGL15      --------->MYB52(1)                    <---------ANAC58 ------->GT1----------->GT1 --------->YAB1<---------PCF2--------->WRKY18(1)--------->SPL7<---------ANAC58   agaaaataacgataccgcaaaaaaaacctttcatagtaatcgtgggagctgggaaacggtcaacgagagtagaatgggacgaccatgcctcgcttgcaca  6340500                                                            --------->At5g28300                                                           ----------->GT1                                                         --------->SPL7                                                         --------->SPL1(2)                                                        <---------SPL1(1)                                                        <---------MYB52(1)                                                        --------->SPL1(1)                      <-----                                                       <---------SPL1(2)                      <------       <----------DOF2                                 <---------SPL7                       ---------      --------->TOE2(3)                     <------ZmHOX2a(2)                              <---------ATHB12    -------->P                             <---------ARR11(3)         <---------DAG2       <---------YAB1    ------>MYB46(1)                        --------->ARR11(3)         <----------DOF2    ------>ZmHOX2a(1)    ------>MYB83              --------->DEAR3(1)   ------------------>SPL14         --------->GLK1(1)   <---------ALFIN1<---------ZAT2----------->GT1<----------DOF2    <-----------GT1  <---------GLK1(1) ----->DOF2        <---------At4g35610 ---------->DOF2--------->DEAR3(1)    <---------AHL20(2)-------   aagccctacctttgctactctagctgataacaccgtcgttaaaaagatcactttcgccgtacggtgattttactttatattatggcatttcctatgatga  6340600  Previous    Next  AGI:  At5g18990.1    Description:  pectinesterase family protein. similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G24130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68809.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 6340078    to: 6341616    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version