Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ---------ARR10 ------>GLK1(2) -------ARR11(1)                                                            --------->ZAT6 -------ARR14(2)                                                       <---------ANAC58 ------>ARR14(2)                                       ----------->HVH21 <---------CCA1(2) ---->TEIL<---------TOE2(3)                     --------->ARR14(2)     <---------ANAC58 ------CCA1(2)            <------MYB83         XXXXXXXXXXXXXXXXXXXX>MIR864-5P ------ARR14(1)           <------MYB46(1)    --------->AHL20(2)        <---------ANAC46 ---->LBD16              --------->MYB59    <---------ATHB12           <---------ANAC55(2) ----ANAC55(2)  <----------DOF2  ---------->DOF2<---------ARR14(2)<---------ICU4   tatctgggtattagggttctttcgagttcggtttctaaagaagctaatcaaatacgactgacctctactcatggcgtatcactaactcaaaaaactcgtg  6330000                                                                       --------->LBD16                                                                      --------->LBD16                                                                      <---------HSFB2a(2)                                                                      --------->HSFB2a(2)                                                                     --------->HSFB2a(2)                                                                     <---------HSFB2a(2)            <                                                                     <---------LBD16                -                                                                     <---------ANAC46             ---                                               ---------->DOF2 <---------AHL20(2)                ----                                         <---------HSFB2a(2)<---------AHL20(2)             <---------ICU4                                --------->ANAC58            --------->AHL20(2)---------->DOF2   <----                   ---------->DOF2   <------------CBF----------->GT1<---------LBD16      <---------ANAC55(2)          <---------ATHB12      --------->ANAC58     --------->At4g35610  ---------->DOF2--------->ANAC55(2)   ggcaaactcgaaatcaagctccaaagagagccagaagcaaattgtagaagaaaggaggtgaattttttattccgggaaaagaaagtcgaatacttatcac  6330100                 <----------DOF2                ==========================HOX2a_HOX2a                ------>ZmHOX2a(2)              --------->ARR11(3)              <---------AGP1              <---------ARR14(2)        --------->ARR14(2)                                                     <---------AHL20(2)        <---------GLK1(2)                     ---------->DOF2               <---------ICU4        <---------ARR14(2)             --------->ICU4                       --------->ATHB51        --------->ARR11(1)         <------ZmHOX2a(1)                        <--------HAHB4      ----------->ARR10          --------->LBD16                            --------->YAB1 ---------ARR14(2)              <---------LBD16 <---------TOE2(3)          --------->ICU4 -------->ARR14(2)      <-----------HVH21 <---------YAB1                   --------->AHL20(2)<------- ------>LBD16 --------->ARR14(2)--------->HSFB2a(2)                   --------->YAB1---------->DOF2 ----->ANAC46 <---------ARR11(3)<-----------RAV1(2)            ----------->GT1 --------->AHL20(2) -----LBD16  <---------CCA1(2)  <---------HSFB2a(2)       <----------DOF2--------->YAB1     <--------   cggaaccctagatttggatctttctgtgtcatttccaggagatgatgaaaaaggtttggactttggagtaaataagaataattaaacaaagtttattaca  6330200                             <---------TGA2(1)                    <---------TOE2(3)                   <---------ICU4                  <---------ATHB12                      <----------DOF2       --------->AHL20(2)    --------->bZIP60(1)       <---------ANAC58       <---------YAB1        <---------ETT(2)          <---------ANAC46                     ---------       <---------AHL20(2)    --------->ETT(2)          <---------ANAC58          ------------>CBF      --------->AHL20(1)     <---------bZIP60(1)<------MYB46(1)                ----------->GT1     --      <---------AHL20(1)     --------->TGA2(1)  <------MYB83              ---------->DOF2  ----------     --------->YAB1--------->YAB1             <---------WOX13(1)       --------->AHL20(2) <---------ANAC46 ----GT1          <---------ATHB51          <<<<<<<<<RAP2.2           --------->AHL20(2) <---------LBD16 -YAB1--------->AHL20(2)  ----------->TGA1 <---------TOE2(3)      --------->AHL20(2)   ----------->HVH21   gcatcaaatataatttgtcaataatgttatgacgacatcaatttttagattggtcttgcttttaaaaaaaaaataaaaaagaggtcaatttgacggataa  6330300                                                                                                    -                                                                                                    -                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                -----                <----------DOF2                                                     <---------AHL20(2)           <----------DOF2                                                         <---------AHL20(2)          <---------ANAC58                                                         --------->AHL20(2)      <---------ANAC58                                                             <---------AHL20(1)     <-------TEIL   <---------At4g35610                                          *TSS    <------MYB83     <---------MYB46(3)                                                      --------->TOE2(3)  ----- --------->DAG2<---------ANAC58                                          --------->GLK1(1)      ----- -->GT1   <---------ANAC58   <<<<<<<<<TBF1                               <---------GLK1(1)     ------ -------->DOF2 <---------ANAC58            ------->TEIL             <---------At4g35610  <------MYB46(1) ->GT1<---------ANAC58    <<<<<<<<<TBF1   <---------CCA1(2)         --------->At4g35610 --------->MYB59   aaaaaggtgcttgctttgctttagcttcttcttcttctctctctgtatctatctatctatctatcgtcttcgctgaaatccctaattaatttggttccta  6330400              --------->ANAC58              --------->ANAC58  --------->ANAC46  --------->TOE2(3) ----->MYB46(1) ----->MYB83 <---------LBD16 ------>AtMYB61 -------ALFIN1--------->ANAC46 ----->MYB46(3)         --------->GLK1(2) ------MYB55(2)  ---------->DOF2                                              --------->At4g35610 ->MYB83     --------->LBD16                     <----------DOF2              <---------At4g35610  -- ->MYB46(1)<---------LBD16       --------->ARR11(3)  ----------->GT1  ------>NtERF2                -- --->P    <---------At5g28300   <------MYB46(1)  ------>ZmHOX2a(1)   --------->ANAC46              -- >ZmHOX2a(1)--------->LBD16     <------MYB83 ------->TEIL        <---------ATHB12             <------   ccaccctcaatttcccgcgcaaagagaatgtggaaggtcatgaaatgaatccttttagtaaattccaatcgacgacatctagctgaaagtttcaagcttt  6330500                            <------MYB46(1)                           --------->MYB59                           <---------AtMYB61                         <---------MYB52(1)                      <-------TEIL<---------AtMYB61                                            ------             <----------DOF2<------MYB83                                                      <------ ------->ANAC58     <---------GLK1(2)<---------AtMYB61                                  <---------AHL20(2) ------->ANAC46     --------->ARR14(2)    <---------DEAR3(2)           <---------YAB1   --------->AHL20(2) ------->ANAC58     <---------ARR14(2)<---------MYB46(3)       <--------P              --------->AHL20(2) ----DOF2    ------>ZmHOX2a(1)  <----------DOF2             <---------AtMYB61    <-----------GT1-----   ctcgcaatctccgtcctttaccgattcgtttggtctttggtggtcgcttcgacgagaatggagaggtagttttctgatttttgtttctatttatttccct  6330600                                                             <---------HSFB2a(1)                                                             <---------HSFC1(2)                       --------->MYB55(2)                    --------->HSFB2a(1)      <-----------ARR10<---------MYB46(3)                    --------->HSFC1(2)      --------->ARR14(2)                                    <---------ARR14(2)      --------->ARR11(3)                                   <---------ARR14(1)      <---------ARR14(2) <---------MYB52(1)    ------->TEIL<---------CCA1(2)      <---------ARR11(3)<-------GAMYB        <---------ZAT14------->TEIL     <---------CCA1(2) --------->MYB52(2)    --------->ZAT18--------->ARR14(2) --->LBD16     <---------ANAC58              <---------ZAT18<---------ARR11(1) ---LBD16      <---------ANAC58              --------->ZAT14<-----------ARR10 ---->LBD16  <---------MYB52(1)            <---------------AtSPL8     ---------->DOF2           <----   gaatttcatatctccgttcttgtgttcgttggcttcaattagataagtgtacttagatttcgaatcttcttgtaaagcttcaagttttgaaaattgttat  6330700                                                                    --------->SPL1(2)                                                                   --------->SPL1(1)                                                                  <---------SPL7                                                                 ------>ZmHOX2a(1)                       --------->At4g35610                      <---------------AtSPL3                <---------ARR14(2)                             <------------------SPL14                --------->ARR14(2)                           --------->ARR11(3)                --------->ARR11(3)                           <---------ARR14(2)              ----------->ARR10                              --------->ARR14(2)            --------->ZAT14                               --------->YAB1            <---------ZAT14                            --------->YAB1               <<<<<<<<<<<<<<<<<LFY            --------->REM1(2)                          <---------ICU4   <---------ARR14(2)         <---------ANAC46                             <---------ATHB12  --------->ARR14(2)       --------->ZAT14 --------->ZAT2         <--------P----------------------->TaNAC69(2)       <---------ZAT14 <---------At4g35610 <---------YAB1<---------YAB1 <---------GLK1(2) --------->YAB1 -----YAB1 --------->ALFIN1                <---------TOE2(3)<---------CCA1(2) <---------AtLEC2   gttttcaattgcagtgtagatactgagcttactagtttcaacaatatggttgctaaatcatcatatcctgtacggattttgcatcacaacaatggtatta  6330800                                    --------->ALFIN1                                  <-----------RAV1(1)                              --------->TOE1(3)                              --------->TOE2(3)                                                    <X                            ------->TEIL                                                    ---------                     <------ZmHOX2a(1)    --------->HSFB2a(2)    <---------At4g35610        <--------                  <-----------RAV1(2)     <---------HSFB2a(2)    <---------ZAT2          <---------At4g35610                  ============================RAV             <------ZmHOX2a(1)         --------->ANAC46            <------ZmHOX2a(1) <---------DAG2            <---------ZAT14      <---------HSFB2a(2) <--- --------->ICU4  <-------TEIL<-----------------AGL3     --------->ZAT14      --------->HSFB2a(2)-----   gtgaagatgaagaaggaggttcaggagttgaaccttatgtgggtctagaattcgatactgcagaggaagctcgtgagttctacaacgcttacgctgctag  6330900  Previous    Next  AGI:  At5g18950.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96889.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6328381    to: 6329972    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18960.1    Description:  FRS12 (FAR1-RELATED SEQUENCE 12); zinc ion binding. similar to FRS7 (FAR1-RELATED SEQUENCE 7), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G06250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71074.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1 (InterPro:IPR004330) Range:  from: 6330381    to: 6333073    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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