Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ------->TEIL                <-                                                             <---------ICU4                  --------                                                  <---------AHL20(2)  <---------CCA1(2)      --------                                           ----------->GT1--------->YAB1                     <-------                                          <---------TOE2(3) --------->ICU4                   --------                       --------->TOE1(3)  <---------TOE2(2) <---------YAB1                   --------               <---------YAB1         <---------TOE2(3) --------->MYB52(1)  <-----------GT1  --------            --------->ICU4           >>>>>>>>>WRKY18  <---------MYB52(2)  <----------DOF2  <---------            <---------YAB1      <---------YAB1  <---------YAB1  <---------AHL20(2) <-----------GT1 --   tcttaaacgatgtgatgatgagaaaccataagttgtcattgacgaaggttattaaaactaacataattacatgtatctttacattttccgatttcacgta  6225600 --------AHL20(2) ->ANAC46                                                                             <---------TOE1(3) ->ANAC55(2)  <---------YAB1                                                          <---------TOE2(3) --ANAC55(2) --------->AHL20(2)                                                 --------------->AGL15 ->ANAC58    <---------AHL20(1)                                                 <---------------AGL15 ->ANAC55(1) <---------AHL20(2)                                                 <----------DOF2 ->ANAC58   --------->YAB1                         --------->HSFB2a(2)          <---------DAG2 --GT1     <---------YAB1                 ---------->ID1   <-----------GT1      ===================== ------->AHL20(2)            ------>ZmHOX2a(2)    <-----------GT1  --------->ZAT6    ---------->DOF2   attaaaaacgagcattataattgttccatgatcgatattgtattgtcgtttttctcgatttgaactataccactagaaaatactttttaaagtttttttg  6225700                         <---------DOF5.7(2)                        ----------->HVH21                        --------->WRKY12                        --------->WRKY45                        --------->WRKY38(1)                       <---------MYB52(1)                   ------>ZmHOX2a(1)                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               <---------ARR14(2)               --------->ARR14(2)        <---------AHL20(2)     <-----------------AGL3    <---------CCA1(1)  --------->DOF5.7(2)                     <-------TEIL    <---------ALFIN1    <---------RVE1(1) --------->At4g35610             ------>ZmHOX2a(1)    <-----------HVH21      <--   --------->ARR11(3) <-------GAMYB                  --------->TOE1(3) <---------ANAC58     <--------   <---------ARR11(3) <---------At4g35610     <---------AHL20(2)       <---------ANAC46    <---------AHL20(2) ======================MADS_MADS  --------->AHL20(2) --------->TOE2(3) <---------ANAC58    --------->AHL20(2)   acaacgatatttttttggatcctccgttgacgaaaataaactaagttttaaatttccttaatagtttcatttttcgtggtcacacttgaagattaaaatt  6225800                                                                             <-------MYC2                                                                             ------->MYC2                                                                             ------->MYC4                                                                             <-------MYC4                                                                             ------->MYC3                                                                            =========================                                                                            <---------TGA1a                                                                            <---------ANAC46                                                                            <---------O2                                                                            --------->O2                                                                            <--------ABF1                                                                            --------->TGA1a                  --------->AHL20(2)                                        <---------ANAC55(2)                  <---------AHL20(2)                                        --------->ANAC55(2)    --   <---------AHL20(2)                                                  --------->ANAC58      --------  --------->AHL20(2)                                                   --------->ANAC58      --------  <---------AHL20(2)       --------->DAG2                        <---------TOE2(3)   <--------------- -------YAB1  --------->YAB1----------->GT1           <---------YAB1 <---------DOF5.7(2)     -------- -YAB1    ---------->DOF2 ---------->DOF2<---------At4g35610 <------------CBF<-------MYC3 --------->ARR14(2)   gtcattaaatgcaaaagcataaaaatgaaaaagtgaaatattaagcggctacaagtatgagagcattgtggtaacgacacgtgtaatgtccaaataggca  6225900                                                                                                  ---                                                                                                  ---                                                                                               ------                                    <---------TOE1(3)                --------->TOE2(3)     xxxxxxxxxx =======================bZIP_DOF    <---------TOE2(3)             <---------ARR14(2)   --------->ANAC46 ------->TOE2(3)                   <---------DOF5.7(2)            --------->ARR14(2)<---------ARR14(2) ->ANAC58              ----------->TBP          <----------DOF2  ------>MYB83       --------->ARR14(2) ->ANAC58    <----------DOF2       <-----------GT1          <-----------GT1  ------>ZmHOX2a(1)------- --AGL1     <---------DAG2         --------->MYB52(1)   ----------->TBP    <---------ICU4  --------->ARR14(2) ->ANAC46<---------ALFIN1<---------AHL20(2)<----------DOF2*TSS   ------>MYB46(1)   <---------CCA1(2)   acgtttatccactacctttcatcttatataaacagattaacgtttcttttcttttcttatataaaccaaatccataatcctcaccatatccacaatcctc  6226000        <----------DOF2                                                           <----------DOF2 ------>ANAC58                                                               <------MYB46(1) ------>ANAC58                    <-----------GT1      <-----------GT1       <------MYB83 >ZmHOX2a(1)                  <---------DAG2--------->YAB1        --------->At4g35610    <-------GAMYB xxxxxxxxxx>smallRNA(se3)     <----------DOF2 ------>ZmHOX2a(1)   <---------At4g35610   <---------MYB46(3) -->TOE2(3)    ----------------->AGL1     <-----------GT1 <---------CCA1(2) --------->MYB59       ---   aagctatctcctttgtgtccataatcgaaacgctttttgcgatttatcctaatcttttttctatcttctgctacaaatttggttcttttttggttgaatt  6226100                                                                         --------->GLK1(1)                                                                         --------->At4g35610                                                                         <------ZmHOX2a(2)                                                                        <---------ARR14(2)                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                        --------->ARR14(2)                                                                        <---------ARR14(3)                                                                        <---------AGP1                                                                        <-----------ARR10                                                                        --------->GLK1(2)                                                                 --------->ANAC58                                                                 --------->ANAC58                                                               ---------->DOF2   --------->ZAT14                                                              ------>ZmHOX2a(1)  <---------ZAT14                                                              ===================HOX2a_HOX2a                                                          <---------ARR14(2)--------->ZAT14                                                          --------->ARR14(2)--------->At4g35610                                                         <---------GLK1(1)  <---------ZAT14                                                         --------->GLK1(1)------>ZmHOX2a(2)          <---------ICU4                            <---------WOX13(1)  --------->ARR14(3)          <---------GLK1(2)               --------->HSFC1(2)  ==================HOX2a_HOX2a<---------ANAC58       --------->YAB1       <---------ANAC58      <---------MYB46(3)   <------ZmHOX2a(1)   <---------ANAC58  --------->AHL20(2)        <---------ANAC58      --------->ATHB12    ----------->ARR10   --------->At4g35610 -------->GT1    ------>ZmHOX2a(1)        <---------HSFC1(2) --------->TOE2(3)   --------->At4g35610-   tggataaaatcataatctcctcttcaattttcttgtgaaatggaagtttcagtgattggaaatcctcaagcgaggatctgcagagcagaattagcttaca  6226200                                                                          --------------->AGL15                                                                         ----------------->AGL2                                                                         <-----------------AGL2                                                                         <-----------------AGL3                                                                     ---------->DOF2                                                                    ------->GAMYB                                                        --------->MYB52(2)<---------------AGL15  <---                                           <---------HSFB2a(2)      --------->AtMYB61          ------                                          ----------->GT1     --------->HSFB2a(2)          ------>ZmHOX2a(2)           <---------TOE2(3)       --------->LBD16    <--------P  --------->ANAC58        <------ZmHOX2a(2) <---------ZAT2                    ----------->GT1  <---------ZAT6--------->ANAC58 ---------->DOF2 -------->ARR11(3)               <---------LBD16    ----------->GT1--------->MYB46(3)    --------->ARR11(3)   gagagcttggatttagatttggctctgatgtaatctccggtgaatcgagaaatagggttagtttctgcaaccaaagctctaaatggaaagagatcgcgat  6226300                <-----------HVH21              ------>ZmHOX2a(2)            --------->AGP1 --------->ANAC58            <---------AGP1 --------->ANAC58            <---------ARR14(2)            --------->ARR14(2)                                                             <---------            --------->ARR11(3)                                               --------->TOE2(3)            <---------ARR11(3)                         <---------MYB52(1)  --------->GLK1(2)     ----           <---------GLK1(1)              ----------->HVH21                <---------ARR11(3)--------         <---------HSFB2a(2)              ----------->TGA1          --------->ANAC46   >>>>>>>>>GT-2 ----TEIL--------->HSFB2a(2)            <---------At4g35610    --------->ARR14(2)    --------->At5g28300 --->ARR14(2)<------ZmHOX2a(2)          --------->At4g35610    <---------ARR14(2)   ----------->GT1   acgttgctcttcgagatctgtcaaatgtgaagccatcgtctccgatgacgcttctccgtttctcaaatccactccaaaatctaaatcggtaattaaccct  6226400                                                                                           <---------                                                                                         ------>ZmHOX2a(1)                                                                                      <-----------GT1                                                                                      ---------->ID1                                            <------ZmHOX2a(2)                        <-----------GT1              <------ZmHOX2a(2)            --------->ARR11(3)                     <---------AHL20(2)             ------->TEIL                  <---------ARR11(3)                    <---------AHL20(1)             <---------ARR14(2)    --------->AHL20(1)                            <---------AHL20(2)             --------->ARR14(2)    <---------AHL20(1)                            --------->AHL20(2)             <---------AGP1        --------->ARR11(3)                        <---------AHL20(2) --GT1    --------->ANAC46    <----------DOF2<-------TEIL                    --------->AHL20(2) ----->ARR14(2)------>ZmHOX2a(2)--------->AHL20(2)                          --------->AHL20(2) ->ZAT6  <---------LBD16<---------YAB1     --------->AGP1                 <---------ARR11(3)   <-----   attctcttctctacggatctattgttcttatactttatatattgagatccattgatatatgatgaaatttaggcaagatttaatttttttcctctttatg  6226500  Previous    Next  AGI:  At5g18670.1    Description:  BMY3 (BETA-AMYLASE 9); beta-amylase. similar to CT-BMY (BETA-AMYLASE 3, BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71027.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66037.1); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 6225958    to: 6228134    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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