Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ARR11(3)                                <---------CCA1(2)                               --------->ARR11(3)                               <---------AHL20(2)                               --------->AHL20(1)                               <---------AHL20(1)                            --------->AHL20(2)                       <---------YAB1                      --------->AHL20(2)                          <---------YAB1                      <---------AHL20(2)<---------AHL20(2)       --------->AHL20(1)              <---                  --------->ATHB12     --------->AHL20(2)       <---------ICU4         <---------YAB1                  ----------->GT1--------->ARR11(3)       ----------->GT1           <---------ARR11(3)        <---------AHL20(2) <---------AHL20(2)            ----------->GT1            --------->ARR11(3)       <---------AHL20(2)  --------->AHL20(2)           <---------ARR11(3)       --------->DAG2  <---       --------->AHL20(2) --------->AHL20(2)            --------->ARR11(3)      ---------->DOF2  <--- ---------GT1    <---------YAB1<---------ARR11(3) --------->CCA1(2)      <----------DOF2         <---   ttactcttataaatttagtatgattaaaattaatatatctattaaaaattggatataagatgttaaatattatggctttaaaaaaagttcttattagtta  6217500                                                   --------->HSFC1(1)                                                   <---------HSFC1(1)           <---------CCA1(2)           --------->ZAT14    <---------ARR14(2)                 --------->ARR14(2)    --------->ARR14(2)                 <---------ARR14(2) <---------ANAC46          <------ZmHOX2a(1)   <----------DOF2                              <-------- ------ANAC46         --------->YAB1   <---------ZAT14                                      --------- ------ANAC58        <---------YAB1    <---------ZAT18                         <------ZmHOX2a(1) ------ANAC55(1)   --------->YAB1 <---------ZAT14  <---------HSFB2a(2)        ----------->GT1<------- ------ANAC58  <----------DOF2    --------->ZAT14  --------->HSFB2a(2)       <---------TOE2(3)    <--   cttgtgtattcgcacatctttttataataggagtagtatagtatactctctttcgagaaatttgtttaaaaaatgttttgaggaaaaaatagaataaaat  6217600                   --------->TOE2(3)                   <----------DOF2                                 <-----------GT1         --------------->AtSPL8                                  <---------YAB1         <---------------AtSPL8                        --------->DAG2        ---------->DOF2                               --------->DAG2      <-----------GT1 -AHL20(2)       ------>MYB46(1)                     ---------->DOF2<---------TOE2(3) >AHL20(2)       ------>MYB83               <---------ANAC46   --------->YAB1 --AHL20(2)    <---------MYB59              ----------->GT1   --------->AHL20(2) -------LBD16  <---------MYB111(1)         --------->MYB59    <---------AHL20(2)   <-----------GT1 --   tggggagtgagaaagtaccaactttagtcatcaaaaacctccaattgggtaaacaaaaaggtcatttattatcgttttactaattttacaacttacaaca  6217700                                                                         <------MYB83                                                            <---------HSFB2a(2)                                                            --------->HSFB2a(2) ---------->DOF2                                                          <------ZmHOX2a(2)     <---------AHL20(2)  <                                                         --------->ARR11(3)    <---------ATHB12    <-                        ----------->GT1                  <---------ARR11(3)--------->WRKY18(1)   <---            <---------TOE2(3)--------->AHL20(2)         ------->GAMYB    ----------->GT1<---------ZAT18           ---------->DOF2   <---------AHL20(2)      --------->MYB52(1)<---------WOX13(1) <----------DOF2 <---------AHL20(2)   <---------ANAC46               <---------DOF5.7(2) <------MYB46(1)--------->ABI4(2) --------->AHL20(2)--------->ALFIN1            ---------->DOF2      <---------YAB1  <---------DEAR3(1) ------->YAB1  ---------->DOF2<---------AHL20(2)   --------->ARR11(3)--------->ATHB12   ------>NtERF2   aaaataaatgtattaaagaaagtgttgggaaataaatagaaatgtctctaaaagataacgatctagaattgtgattggtcaataaatcggcgctctctgt  6217800                                                                        -------->HAHB4                       <---------ICU4                                   <---------ICU4                      <---------YAB1                                   <---------ATHB51        <---------CCA1(2)                                              --------->ICU4 <---------TOE1(3)  <---------ICU4                  <---------CCA1(2)  <---------YAB1 <---------TOE2(3)  --------->YAB1                <---------CCA1(2)  --------->YAB1  <----------DOF2 ---------At5g28300<---------YAB1      --------->ANAC58             <---------AHL20(2) ----------GT1     --------->ICU4      --------->ANAC58             --------->AHL20(2)  ---------->DOF2 -------DOF2  --------->bZIP60(2)      --------->ANAC46           <----------DOF2<---------CCA1(2)   tttacggtttgtatccatgtcatcatcatcccatcttcatcacacaactctcttatctctctctctctctttaattattccccatttctttaaagcttca  6217900                                                                       ==============================                        --------->MYB52(1)                        ---------->DOF2   <----------DOF2                     --------->ZAT2                          --------->ANAC58 <----------DOF2      ==                    --------->ANAC58                         --------->ANAC58--------->TOE2(3)     --              *TSS  --------->ANAC58                  --------->DAG2  --------->ARR11(3)         ----          --------->ANAC58                           ---------->DOF2  <---------ARR11(3)    <--------          --------->ANAC58       --------->YAB1   <---------------AGL15<------ZmHOX2a(2)<----------DOF2   aatctatctctcacgaactcccaagctaacaacattcacaaggagagagaaacaataaagggcaaggaaaaagatcaaacctttttctttctttctttct  6218000                                       ---------->ID1                   <---------ANAC58                                      <-------GAMYB                     <---------ANAC58                                     --------->MYB52(2)                 <---------ANAC46                                     <---------MYB46(3)              <---------MYB52(1) =====HOX2a_HOX2a             --------->GLK1(2)                      --------->ALFIN1              -- =============================HOX2a_HOX2a                --------->YAB1 <---------PCF2             -- ---->ZmHOX2a(1)       <------ZmHOX2a(2)              --------->HSFB2a(2)                          <- ------->RAV1(2)      --------->ARR11(3)              <---------HSFB2a(2)                   <-------- --DOF2               <---------ARR11(3)    <---------CCA1(2)   --------->MYB52(1)          <--------   cctgctctctgcaatttagaagaagatcgaagaatttgtttgttgtttatcttcttctataaaaacaaaccgtggggtctgttttcatttctggccttgc  6218100                                                                                                   --                --------->ZAT2                                                                 <----- ------->ARR14(2)                                                                         <----------DOF2 ------->GLK1(2)<---------ZAT2                               <---------AHL20(2)        <-----------GT1 --------ARR14(2)        <---------ATHB12                    --------->AHL20(2)       <---------ZAT14 -ANAC58        <---------At4g35610                      --------->AHL20(2)           --------->ZAT14 -ANAC58        --------->At4g35610             --------->HSFB2a(2)    <---------AHL20(2) <---------DAG2   gattccgataaaactctcagcttcccattcaatccaatccaattccacttctcaaacatatatataattctatatttttgagagacagtttactttttct  6218200                                                                               ------>ZmHOX2a(2)                                                                            --------->YAB1                                                                            --------->ATHB12                                                                           <---------ATHB12                                                                       <---------MYB55(2)                                                                       --------->MYB46(3)                                                   ------>ZmHOX2a(1)  --------->ANAC58                                                   ===================================HOX2a_HOX2a                                                ------>ZmHOX2a(1)     --------->ANAC46                                            <-----------GT1     <---------HSFB2a(1)                                        <----------DOF2         --------->HSFC1(2)       <------------------------ANAC81 <---------ANAC58         <---------HSFC1(2) ---->ZmHOX2a(1)      <----------DOF2  <---------ANAC58         --------->At4g35610 ------GT1      <----------DOF2   <----------DOF2----------->RAV1(2)  --------->ANAC58   ccttctctctctctctctctttctctttctctgtctctttggcttttctcctcctgttctcatggaagcttcacccaatgatcgacttcattttggcaaa  6218300                                                                    ------>ZmHOX2a(2)                                                                   --------->GLK1(1)                                                                   <---------GLK1(1)                                                                   <------ZmHOX2a(2)                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                                  --------->ARR14(2)     <---------MYB46(3)       ----------->GT1                                       <-----------GT1       <----------DOF2     <---------ANAC58            <-----------GT1         <----------DOF2 <---------TOE1(2)     <---------ANAC46       <---------MYB52(1)   <-----------ARR10<---------AGP1---------->ID1 <-----     <---------ANAC58   ------>ZmHOX2a(1)       <---------CCA1(2) <---------ARR14(2)  <-----------RAV1(1)   atgggtttcgggtaaaaaaaacattcctctgttttttactctgtttcttcaaatctctgcttttaacagatctcttgggtttgtacttttgtgggtcgtc  6218400  Previous    Next  AGI:  At5g18650.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G62970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71015.1); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6217914    to: 6220704    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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