Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      *TSS                                                                    ----------->HVH21                                                                    --------->ANAC46                                                               ==================MYC_MYB                                                               ------->GAMYB                                                              --------->MYB46(3)                                                         --------->ANAC58                                                         --------->ANAC46                                                         --------->ANAC58                                                       ==========================bZIP_DOF          --------->LBD16            --------->AHL20(2)---------->DOF2 ==============================          ------>ZmHOX2a(1)    ----------->GT1       <---------AHL20(2)--------->TGA1a  --------->HSFC1(2)    <---------HSFB2a(1)      <--------P              --------->AHL20(2)<---------TGA1a  <---------HSFC1(2)    <---------HSFC1(2)     <---------MYB46(3)----------->GT1  <---------MYB52(2)<---------MYB52(2)    --------->HSFB2a(1) <----------DOF2     --------->DAG2  ----------->RAV1(1) --------->MYB46(3) <-    --------->HSFC1(2) <---------ANAC58    ======================================bZIP_DOF          <-   <---------TOE1(2)   <---------ANAC58    ---------->DOF2 <----------ID1      --------->DEAR3(2) <--   aatcgagggttcctgagttttttttgctttggttagtaaataaacaaaagtgaaattaaaagcaacaaacccgacgtttgaaacgaccgtagcttctatt  6202200                                                                            --------->O2                                                                            <---------O2                                                                            --------->TGA1a                                                                            <---------TGA1a                                                                          <---------ALFIN1                              --------->At4g35610 <---------ANAC58      ------>NtERF2                              <---------At4g35610 <---------ANAC58     --------->ANAC58             --------->HSFC1(1)               <---------MYB52(1)       --------->ANAC58             --------->HSFB2a(2)             ------->MYC3              --------->ANAC46             <---------HSFB2a(2)             <-------MYC3             <---------LBD16              --     <---------MYB52(1)     --------->ANAC46<---------TGA1a      --------->GLK1(2)                <--    ==================================================MYC_MYB   --------->ARR14(2)                ---    <-------GAMYB          <---------LBD16  <---------O2        <---------ARR11(3)                --- ===========MYC_MYB    <-----------ARR10    --------->TGA1a     <---------ARR14(2)                <-- ----------GT1   --------->GLK1(1)          --------->O2        --------->ARR11(3)            <------ --------At5g28300     --------->ARR14(2) <---------ALFIN1      <---------GLK1(2)             <------ ---------GT1<---------HSFC1(1)   ----------->ARR10  <---------WRKY18(1)--------->LBD16      <-------   ttaccccgttgatttcgagaaatcaaatctacggctgagatgtgccacgttggcttgacttataaagattctcccgccacttgagaagtaagagtttcgg  6202300                                                                                                    -                                                                                                    -                                                                                                   <-     ------>NtERF2                                                                                 --    --------->ANAC46                                                                               --   <---------LBD16                                                                               ---- ------->KAN4(2)                                                                                ----- --------TaMYB80                                                                                <---- ------>GLK1(1)                                                              <---------WRKY38(1)----- ------>HSFB2a(1)                                                            <---------WRKY12   ----- -------GLK1(1)         ---------->DOF2                                  --------->DAG2       ------- ---HSFB2a(2)        <----------DOF2                                   ---------->DOF2        <------ ---ANAC46      <---------LBD16                                ---------->DOF2            <---------YAB1 --LBD16     <---------GLK1(1)                           ---------->DOF2--------->DAG2   <-----------   aaattcccgccttggaattcgggctttaaaggcccatgggctcgaagttaaacttagaagaaagcgaaagtcaaaaaggtcaacttctcgttcttataac  6202400                                          --------->AtMYB61                                         --------->bZIP60(2)     <---------DAG2               --------->At4g35610 --------->MYB46(3)               <---------At4g35610 -------->SPL7                   --------->GLK1(2) -------->RAP2.6(3)              <---------ARR14(2) --------ARR14(2)                --------->ARR14(2)                    --------->ANAC46 ------->MYB52(1)             --------->ANAC58                       <---------ALFIN1 ------->ARR14(2)             --------->ANAC55(2)                   --------->ZAT14 --->GAMYB                    --------->ANAC55(1)               --------->ANAC55(1) ---->ANAC55(2)               --------->ANAC58                  --------->ANAC58                  --- -----ANAC55(2)               --------->ANAC46                  --------->ANAC58              <------ ---->ANAC58                  <---------ANAC55(2)               --------->ANAC46         <-----------GT1 ---->ANAC58        ------>NtERF2------->TEIL <---------At4g35610   <---------REM1(2)  --------->YAB1 -->MYB52(1)       --------->ANAC46    <---------ALFIN1       <---------ALFIN1         <--------ATHB1 -----GT1         --------->MYB46(3)----------->HVH21      <---------ETT(1)           <---------ATHB51 ------AGL3     <-----------GT1 <---------CCA1(2)          ----------->HVH21          <---------ATHB12   ggaacggccttatccatttatccgcccgaatcacgtatctgacacctcagcacttgaagttgcgacacgctacacacctaaaattccaataatacccttt  6202500                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(2)                                                                           --------->KAN4(2)                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                          <---------KAN4(1)                                                                          --------->KAN4(1)                                  --------->REM1(2)                       <----------TaMYB80          --------->ANAC46        <---------ARR14(2)                      --------->HSFB2a(1)          --------->ANAC58     <---------ANAC58                          <---------ARR14(2)        <---------ALFIN1       <---------ANAC46                          ---------->TaMYB80       <---------REM1(2)       <---------ANAC58          ----------->GT1 --------->ARR14(2)       -------->P          <----------DOF2      --------->ALFIN1         <---------KAN4(2)        <-- ------->DOF2           ------->TEIL        ---------->DOF2        --------->MYB52(1)          <----- ----DOF2 --------->ANAC58<---------DAG2<------ZmHOX2a(1)<---------TOE2(3)<---------HSFB2a(1) <------   gaaagagcctacacgcttgtctcatgcacctttgcgtatagaggatgaaagtggaagttaagaaaaaaaaaaccgaatattcgtattttaatcgccgttt  6202600                                                                                    --------->KAN4(2)                                                                                   --------->KAN4(1)                                                                                   <---------KAN4(1)                                                                                  <---------KAN4(2)                                                                               <------NtERF2                                                       --------->ZAT2         ------>NtERF2                                                       --------->At4g35610    --------->LBD16                                                  --------->CCA1(2)          <---------ANAC46                                                 --------->AHL20(1)          --------->ETT(1)                                                 <---------AHL20(1)          --------->LBD16                                           --------->YAB1                   <---------LBD16                                          <---------AHL20(2)                <---------ANAC46   --------------->AGL15           *TSS  --------->AHL20(2)             <---------ANAC58 --------DOF2               <------ZmHOX2a(2) --------->AHL20(2)        <---------ANAC58      ------- ----ARR11(1)              <---------ARR11(3) --------->YAB1 <---------ANAC46<---------LBD16 <------- ---MYB52(1)               --------->ARR11(3) <---------AHL20(2)      <-----------GT1        <------ZmHOX2a(2)   cttttcttctattagcttctgtttcgcaagatcacgacttctatataataatatataagctcgccgtataattttcttgccgggaataatctccgatcat  6202700                                                                                    <---------GLK1(1)                                                                                    --------->GLK1(1)                                                                                <---------ANAC46                                                                               --------->At4g35610                                                            <---------AHL20(2)<---------MYB46(3)                                                  ------>ZmHOX2a(1)          <--------P                                                 --------->TOE2(3)          <-------GAMYB     <---------HSFB2a(1)                        ------>ZmHOX2a(2)           <---------ANAC58     <---------HSFC1(2)                        <------ZmHOX2a(2)            <---------ANAC58 <-------     --------->HSFB2a(1)                      --------->ARR14(2)       <----------DOF2    <----------DOF2     --------->HSFC1(2)                       <---------ARR14(2)<---------LBD16<---------At4g35610 -->YAB1                                 <----------DOF2<---------AHL20(2) <---------MYB46(3)<------- --ATHB12             ---------->DOF2<---------TOE2(3)  --------->AHL20(2)<---------AtMYB61  <-------   cgtcggaaatttccgaattgttgtaaaagaagtccaatttaggctttggatcctcagtttaatttatctgggacttttggttgctgaaatctctttcggg  6202800            <---------ICU4     ------>ZmHOX2a(1)     <---------ANAC55(2)                                   <----------DOF2  ---------->ID1           <---------ANAC46         <---------AHL20(2)    <---------ARR14(2) --ANAC46  <---------YAB1  <---------ANAC58   ----------->GT1             --------->ARR14(2) --ANAC58  ------>ZmHOX2a(1)                 <---------TOE2(3)     <---------ANAC58       <---------At4g35610 --ANAC58 --------->TOE2(3)<---------ANAC58  <---------TOE1(3)     <---------ANAC58       --------->At4g35610   ttttgtcctaatcctcattagtttgggtttcgtgagtctcgttttataaggtatatttttggctaatttgcttccgaattctgctttgttttagctcaat  6202900                                           <---------YAB1                                        <---------ANAC46                                    <-------GAMYB                                            <------NtERF2                                   <---------MYB46(3)                                       ------>NtERF2               <---------MYB46(3) --------->ALFIN1                     ---------->DOF2     --------->ATERF1(2)              <--------P          <---------AtMYB61               <----------ID1           <---------ATERF1(2)              <---------WOX13(1)<---------ANAC46               --------->TOE1(2)          <---------ANAC58            <---------MYB46(3)  <---------bZIP60(2)      <---------HSFB2a(2)              <---------ANAC46       <---------YAB1      <------ZmHOX2a(1)             --------->HSFB2a(2)              <---------ANAC58   tttgcccttaacattggttgatgaacagaggatgatgtggttgtgtttattgtcttcttgcagaacatgggacaaaagagattgttgttcttgctggcag  6203000                                                                           --------->ATHB12                                                                         <---------------AGL15                                                                         <----------DOF2                                                                        --------->TOE2(3)                                                                        --------------->AGL15                                                                        <---------------AGL15                                                                       <-----------------AGL1                                                       <--------ATHB1  <-----------------AG                                                       -------->HAHB4  ----------------->AG                                                       <---------ICU4  ----------------->AGL2                   ======================================================================MADS_MADS        <---------ANAC58          --------->ALFIN1    <---------YAB1   ----------------->AGL1        <---------ANAC58       <---------AtMYB61      --------->ICU4   <-----------------AGL3    <---------DAG2 =====================================================================MADS_MADS    <----------DOF2<---------------AGL15            --------->YAB1     ----------------->AGL3   <---- <-----------GT1   --------------->AGL15         --------->HSFB2a(2)   <-----------------AGL2  <-----   tttttacttttcttgtttcatcttcatatggtagaggtggtaatgcaacttctataatgattctatgtctgtttcctttattgggacttccagttttttt  6203100  Previous    Next  AGI:  At5g18620.1    Description:  CHR17 (CHROMATIN REMODELING FACTOR17); DNA-dependent ATPase. similar to CHR11 (CHROMATIN-REMODELING PROTEIN 11), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT3G06400.1); similar to Putative SWI/SNF related, matrix associated, actin dependent regulator of chromatin [Oryza sativa] (GB:AAK53826.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71013.1); similar to hypothetical protein OsJ_016382 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32899.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain SLIDE (InterPro:IPR015195); contains InterPro domain Helicase, superfamily 1 and 2, ATP-bi Range:  from: 6195928    to: 6202168    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18630.1    Description:  lipase class 3 family protein. similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT5G18640.1); similar to unknown [Populus trichocarpa] (GB:ABK93064.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) Range:  from: 6202635    to: 6205739    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version