Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                   --------------->AGL15       ------                                                                   <---------------AGL15     --------                   <---------ARR14(2)                             ----------------->AGL1     <-------                   --------->ARR14(2)                             ----------------->AGL2     --------                   --------->KAN4(2)                              ----------------->AG--------->ARR14(2)                  <----------TaMYB80--------->TOE1(3)             <-----------------AGL2    ---------                 ---------->TaMYB80 --------->TOE2(3)             ----------------->AGL3  <---------At5g28300     --------->ANAC58            --------->GLK1(1)             <---------GLK1(1)      <---------ARR14(2)     --------->ANAC58            <---------GLK1(1)             --------->GLK1(1)   --------->LBD16     --------->ANAC46      ---------->DOF2                    --------->ARR14(2)  --------->LBD16   - ------->DOF2   <---------------------WRI1--------->YAB1      <---------GLK1(2)  <---------LBD16<----   aaaagacacccaaatatcgaatatacgctcaaaggaaaccctaatcttacttagaatacattcagatttccaaatacagcaatccccgaattcacagccg  6201800      ----------->GT1 ->NtERF2 -----DDF1 --->RAP2.6(2) --->DEAR3(1) ----->HVH21 ->GAMYB --->At1g77200                                                      ------>NtERF2 --->RAP2.3(3)                                                   --------->LBD16 --->DREB2C(2)                                                  <---------ANAC46             <-------TEIL ->ZAT2                                                        <---------LBD16            <---------At4g35610 --At4g35610                                             <---------At4g35610            <-----------RAV1(2) ->At4g35610                                         <-----------HVH21                  ============= >DEAR3(1)                                           <-----------TGA1           <-----------TGA1 -------->AtLEC2                                   --------->At4g35610          <-----------HVH21 -----RAP2.6(3)                                    <---------At4g35610         --------->ETT(2)   <--   acatgcgaatgtaaatcgaagagtggaaaacagaaacgaagacatacctcttcagcgtcatcttctacggggacaacctcgtcgtcagagacaggtgctt  6201900                               ---------->DOF2                              <----------CDC5                   <-----------HVH21                                                    <---------DOF5.7(2)                  --------->bZIP60(2)                                                 <---------MYB52(1)                  --------->ANAC46       --------->ATERF1(1)                          --------->DOF5.7(2)          --------->ARR11(3) --------->LBD16                                         --------->TOE1(3)          <---------ARR11(3) --------->At4g35610                                     ================         --------->REM1(1)   <---------At4g35610                                     --------->TOE2(3)       ----------->RAV1(1)   <------NtERF2                                           <-------GAMYB      <------NtERF2<-----------TGA1     <---------ATERF1(1)                         ------>ZmHOX2a(2)    --------->ANAC58       --------->ZAT18         <---------ZAT2                   =================    --------->RAP2.6(2)    <---------LBD16     <------NtERF2                        =================    --------->ANAC58   <---------At4g35610 ------>NtERF2                        ----------->HVH21 ==================RAV --------->At4g35610--------->DEAR3(1)                  <---------ANAC58    --- ---------HVH21  ------>ZmHOX2a(1)     ----------->HVH21                      <---------ANAC58   <---   cgtcgggcgcaacatcttcctcgtcagagcccgcagagcgagcgacggcctcgagctcgtcatcatcttcttccacattggcctgatcgttaacttgctc  6202000                                                                         <---------ARR14(2)                                                                         --------->GLK1(2)       ------>NtERF2--------->TGA1a                                      --------->ARR14(2)      --------->DEAR3(1)                                                 ------->TEIL      ----------->HVH21                                         <------NtERF2------>ZmHOX2a(1)    ------>ZmHOX2a(1)          <---------HSFC1(2)              ------>NtERF2 <---------YAB1   <------ZmHOX2a(2) =============================MYC_MYB          --------->ARR11(3)     --------->ANAC46        ======= ====HOX2a_HOX2a    --------->O2     --------->ANAC46         --------->ANAC58     <---------ANAC58 ==========HOX2a_HOX2a         --------->HSFC1(2)             --------->ANAC58     <---------ANAC46 --->ZmHOX2a(1)--------->ANAC58--------->HSFB2a(1)            --------->ANAC46     <---------ANAC58 ------ALFIN1  --------->ANAC58<---------HSFB2a(1)           ------>NtERF2   ========================HOX2a_HOX2a   ctcttcctccgacgagtaagcctcgtctgaagaaacttcccgcttcgaagctctagccatcgacgcgcctctacgaatcctgatttcgtctgagagatcg  6202100                                                                    *TSS                                                                    ----------->HVH21                                                                    --------->ANAC46                                                               ------->GAMYB                                                               ==================MYC_MYB                                                              <---------MYB52(2)                                                         --------->ANAC46                                                         --------->ANAC58                                                         --------->ANAC58          --------->LBD16                              ---------->DOF2 <---------TGA1a  <---------HSFC1(2)          ------>ZmHOX2a(1)          --------->AHL20(2)==========================bZIP_DOF    <---------HSFB2a(1)        ----------->GT1       --------->AHL20(2)==============================    --------->HSFB2a(1)    <---------MYB46(3)        <---------AHL20(2)--------->TGA1a  --------->HSFC1(2)    <---------HSFC1(2)  <----------DOF2      ----------->GT1  --------->MYB46(3)--------->MYB46(3)    --------->HSFC1(2) <---------ANAC58     --------->DAG2  ----------->RAV1(1) <---------MYB52(2) <-   <---------TOE1(2)   <---------ANAC58    ---------->DOF2 <----------ID1      --------->DEAR3(2)  <- ================HOX2a_HOX2a <--------P    ======================================bZIP_DOF         <--   aatcgagggttcctgagttttttttgctttggttagtaaataaacaaaagtgaaattaaaagcaacaaacccgacgtttgaaacgaccgtagcttctatt  6202200                                                                            <---------TGA1a                                                                            --------->TGA1a                                                                            --------->O2                                                                            <---------O2                                                                          <---------ALFIN1                              --------->At4g35610 <---------ANAC58      --------->LBD16                              <---------At4g35610 <---------ANAC58     --------->ANAC58             --------->HSFB2a(2)              <---------MYB52(1)       --------->ANAC46             --------->HSFC1(1)              ------->MYC3              --------->ANAC58             <---------HSFB2a(2)             <-------MYC3             <---------LBD16              --     <---------MYB52(1)     --------->ANAC46--------->O2         --------->GLK1(2)                <--    ==================================================MYC_MYB   <---------GLK1(2)                 ---    <-------GAMYB          <---------LBD16  <---------TGA1a     --------->ARR14(2)                <-- ===========MYC_MYB    --------->ARR14(2)   --------->TGA1a     --------->ARR11(3)                --- ----------GT1   --------->GLK1(1)          <---------O2        <---------ARR14(2)            <------ --------At5g28300     <-----------ARR10  <---------ALFIN1      <---------ARR11(3)            <------ ---------GT1<---------HSFC1(1)   ----------->ARR10  <---------WRKY18(1)------>NtERF2        <-------   ttaccccgttgatttcgagaaatcaaatctacggctgagatgtgccacgttggcttgacttataaagattctcccgccacttgagaagtaagagtttcgg  6202300                                                                                                    -                                                                                                    -                                                                                                   <-     ------>NtERF2                                                                                 --    --------->ANAC46                                                                               --   <---------LBD16                                                                               ---- ------->KAN4(2)                                                                                ----- --------TaMYB80                                                                                ----- ------>HSFB2a(1)                                                            <---------WRKY12   <---- -------GLK1(1)                                                              <---------WRKY38(1)----- ------>GLK1(1)         ---------->DOF2                                  --------->DAG2       ------- ---ANAC46           <----------DOF2                                   ---------->DOF2        <------ ---HSFB2a(2)   <---------LBD16                                ---------->DOF2            <---------YAB1 --LBD16     <---------GLK1(1)                           ---------->DOF2--------->DAG2   <-----------   aaattcccgccttggaattcgggctttaaaggcccatgggctcgaagttaaacttagaagaaagcgaaagtcaaaaaggtcaacttctcgttcttataac  6202400                                          --------->AtMYB61                                         --------->bZIP60(2)     <---------DAG2               <---------At4g35610 --------->MYB46(3)               --------->At4g35610 -------->RAP2.6(3)              --------->GLK1(2) -------->SPL7                   <---------ARR14(2) --------ARR14(2)                ------->TEIL                          --------->ANAC46 ------->MYB52(1)             --------->ANAC55(1)                    <---------ALFIN1 ------->ARR14(2)             <---------ANAC55(2)                   <---------REM1(2) --->GAMYB                    --------->ANAC55(2)               --------->ANAC58 ---->ANAC55(2)               --------->ANAC46                  --------->ANAC58                  --- ---->ANAC58                  --------->ANAC58                  --------->ANAC55(1)           <------ -----ANAC55(2)               --------->ANAC58<---------At4g35610   --------->ZAT14      <-----------GT1 ---->ANAC58        ------>NtERF2--------->ARR14(2)             --------->ANAC46       <--------ATHB1 -->MYB52(1)       --------->ANAC46    <---------ALFIN1       <---------ALFIN1         --------->YAB1 -----GT1         --------->MYB46(3)----------->HVH21      ----------->HVH21          <---------ATHB51 ------AGL3     <-----------GT1 <---------CCA1(2)          <---------ETT(1)           <---------ATHB12   ggaacggccttatccatttatccgcccgaatcacgtatctgacacctcagcacttgaagttgcgacacgctacacacctaaaattccaataatacccttt  6202500                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                           --------->KAN4(2)                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                          <----------TaMYB80                                                                          <---------KAN4(1)                                  --------->REM1(2)                       --------->HSFB2a(1)          --------->ANAC58        <---------ARR14(2)                      --------->KAN4(1)          --------->ANAC58     <---------ANAC46                          <---------KAN4(2)        <---------ALFIN1       <---------ANAC58                          ---------->TaMYB80       <---------REM1(2)       <---------ANAC58          <---------TOE2(3)<---------HSFB2a(1)       -------->P          <----------DOF2      --------->ALFIN1         <---------ARR14(2)       <-- ------->DOF2           ------->TEIL        ---------->DOF2        --------->MYB52(1)          <----- ----DOF2 --------->ANAC46<---------DAG2<------ZmHOX2a(1)----------->GT1 --------->ARR14(2)   <------   gaaagagcctacacgcttgtctcatgcacctttgcgtatagaggatgaaagtggaagttaagaaaaaaaaaaccgaatattcgtattttaatcgccgttt  6202600                                                                                    --------->KAN4(2)                                                                                   --------->KAN4(1)                                                                                   <---------KAN4(1)                                                                                  <---------KAN4(2)                                                                               <------NtERF2                                                       --------->ZAT2         ------>NtERF2                                                       --------->At4g35610    --------->LBD16                                                  --------->CCA1(2)          <---------ANAC46                                                 --------->AHL20(1)          <---------LBD16                                                 <---------AHL20(1)          --------->LBD16                                           --------->YAB1                   <---------ANAC46                                          <---------AHL20(2)                <---------LBD16   --------------->AGL15           *TSS  --------->AHL20(2)             <---------ANAC58 --------DOF2               <------ZmHOX2a(2) --------->AHL20(2)        <---------ANAC58      ------- ----ARR11(1)              <---------ARR11(3) <---------AHL20(2)      <-----------GT1        <------ZmHOX2a(2) ---MYB52(1)               --------->ARR11(3) --------->YAB1 <---------ANAC46--------->ETT(1)<-------   cttttcttctattagcttctgtttcgcaagatcacgacttctatataataatatataagctcgccgtataattttcttgccgggaataatctccgatcat  6202700  Previous    Next  AGI:  At5g18620.1    Description:  CHR17 (CHROMATIN REMODELING FACTOR17); DNA-dependent ATPase. similar to CHR11 (CHROMATIN-REMODELING PROTEIN 11), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT3G06400.1); similar to Putative SWI/SNF related, matrix associated, actin dependent regulator of chromatin [Oryza sativa] (GB:AAK53826.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71013.1); similar to hypothetical protein OsJ_016382 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32899.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain SLIDE (InterPro:IPR015195); contains InterPro domain Helicase, superfamily 1 and 2, ATP-bi Range:  from: 6195928    to: 6202168    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18630.1    Description:  lipase class 3 family protein. similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT5G18640.1); similar to unknown [Populus trichocarpa] (GB:ABK93064.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) Range:  from: 6202635    to: 6205739    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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